Stbd1 (starch binding domain 1) - Rat Genome Database

Name: Stbd1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Stbd1 (starch binding domain 1) Rattus norvegicus

Analyze

Symbol:

Stbd1

Name:

starch binding domain 1

RGD ID:

1311800

Description:

Predicted to enable cargo receptor activity; enzyme binding activity; and glycogen binding activity. Predicted to be involved in glycophagy; intracellular transport; and substrate localization to autophagosome. Predicted to act upstream of or within endocytosis. Predicted to be located in T-tubule; endoplasmic reticulum; and perinuclear region of cytoplasm. Predicted to be active in membrane. Orthologous to human STBD1 (starch binding domain 1); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; amiodarone.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

genethonin-1; glycophagy cargo receptor stbd1; LOC305234; MGC108973; RGD1311800; similar to genethonin 1; starch-binding domain-containing protein 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STBD1 (starch binding domain 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Stbd1 (starch binding domain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stbd1 (starch binding domain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STBD1 (starch binding domain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STBD1 (starch binding domain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stbd1 (starch binding domain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STBD1 (starch binding domain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STBD1 (starch binding domain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stbd1 (starch binding domain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Stbd1 (starch binding domain 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	STBD1 (starch binding domain 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stbd1 (starch binding domain 1)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	stbd1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	15,470,452 - 15,473,857 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	15,469,582 - 15,477,443 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	15,478,421 - 15,481,826 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	14	16,797,258 - 16,800,663 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	14	15,492,680 - 15,496,085 (-)	NCBI	Rnor_WKY
Rnor_6.0	14	16,976,355 - 16,979,760 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	16,976,356 - 16,979,760 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	16,889,874 - 16,893,279 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	17,031,752 - 17,035,157 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	17,031,752 - 17,035,157 (-)	NCBI
Celera	14	14,865,243 - 14,868,648 (-)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Kabuki Syndrome 1 (ISO)

progressive myoclonus epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

aflatoxin B1 (ISO)

amiodarone (EXP)

amitriptyline (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

buspirone (EXP)

buta-1,3-diene (ISO)

caffeine (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chrysene (ISO)

ciglitazone (ISO)

cisplatin (ISO)

clomipramine (EXP)

cobalt dichloride (EXP,ISO)

cyclosporin A (ISO)

cyproconazole (EXP,ISO)

decabromodiphenyl ether (ISO)

dioxygen (ISO)

diuron (EXP)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

epoxiconazole (EXP,ISO)

flutamide (EXP)

genistein (ISO)

gentamycin (EXP)

gold atom (ISO)

gold(0) (ISO)

imipramine (EXP)

inulin (ISO)

ivermectin (ISO)

ketoconazole (EXP)

leflunomide (EXP,ISO)

mercury dichloride (EXP)

mitomycin C (ISO)

N-methyl-4-phenylpyridinium (EXP,ISO)

nefazodone (EXP)

nickel dichloride (EXP)

nimesulide (EXP)

paracetamol (EXP)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phorone (EXP)

piperonyl butoxide (EXP)

potassium dichromate (ISO)

prochloraz (EXP)

propiconazole (ISO)

quercetin (ISO)

raloxifene (ISO)

resorcinol (ISO)

resveratrol (ISO)

selenium atom (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triclosan (ISO)

triphenyl phosphate (EXP)

trovafloxacin (ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

zinc dichloride (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endocytosis (IEA,ISO)

glycogen catabolic process (ISO,ISS)

glycophagy (ISO,ISS)

intracellular transport (ISO)

substrate localization to autophagosome (ISO)

Cellular Component

endoplasmic reticulum (ISO)

endoplasmic reticulum membrane (IEA)

membrane (IBA,ISO,ISS)

perinuclear region of cytoplasm (ISO,ISS)

phagophore assembly site membrane (IEA)

plasma membrane (ISO)

T-tubule (ISO)

Molecular Function

cargo receptor activity (ISO)

enzyme binding (ISO)

glycogen binding (IEA,ISO,ISS)

polysaccharide binding (ISO)

protein binding (ISO)

starch binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:9794794	PMID:15489334	PMID:16396499	PMID:20810658	PMID:21893048	PMID:24837458	PMID:27358407

Genomics

Comparative Map Data

Stbd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	15,470,452 - 15,473,857 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	15,469,582 - 15,477,443 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	15,478,421 - 15,481,826 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	14	16,797,258 - 16,800,663 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	14	15,492,680 - 15,496,085 (-)	NCBI	Rnor_WKY
Rnor_6.0	14	16,976,355 - 16,979,760 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	16,976,356 - 16,979,760 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	16,889,874 - 16,893,279 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	17,031,752 - 17,035,157 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	17,031,752 - 17,035,157 (-)	NCBI
Celera	14	14,865,243 - 14,868,648 (-)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

STBD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	76,306,733 - 76,311,130 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	4	76,306,733 - 76,311,130 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	77,227,886 - 77,232,283 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	77,446,823 - 77,451,307 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	74,527,815 - 74,532,422 (+)	NCBI		Celera
Cytogenetic Map	4	q21.1	NCBI
HuRef	4	72,979,421 - 72,984,526 (+)	NCBI		HuRef
CHM1_1	4	77,203,674 - 77,208,779 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	79,647,451 - 79,651,849 (+)	NCBI		T2T-CHM13v2.0

Stbd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	92,750,910 - 92,754,438 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	92,750,900 - 92,754,438 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	92,603,051 - 92,606,579 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	92,603,041 - 92,606,579 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	93,032,077 - 93,035,605 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	93,678,255 - 93,681,783 (+)	NCBI		MGSCv36	mm8
Celera	5	90,744,537 - 90,747,984 (+)	NCBI		Celera
Cytogenetic Map	5	E2	NCBI
cM Map	5	47.21	NCBI

Stbd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955433	1,036,265 - 1,038,652 (+)	NCBI	ChiLan1.0	ChiLan1.0

STBD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	4	53,946,865 - 53,952,342 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	47,889,830 - 47,894,943 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	53,729,242 - 53,734,492 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	53,729,242 - 53,734,492 (-)	Ensembl	panpan1.1		panPan2

STBD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	932,245 - 953,070 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	951,698 - 952,897 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	40,930,912 - 40,933,707 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	974,973 - 977,768 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	975,002 - 977,591 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	972,850 - 975,644 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	927,058 - 929,832 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	39,245,883 - 39,248,678 (-)	NCBI		UU_Cfam_GSD_1.0

Stbd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	11,203,033 - 11,207,050 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936676	299,963 - 304,213 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936676	300,244 - 304,206 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STBD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	8	71,982,987 - 71,987,880 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	76,178,011 - 76,182,546 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STBD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	24,799,870 - 24,804,273 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	24,799,906 - 24,804,473 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	3,147,865 - 3,153,301 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stbd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624757	14,631,455 - 14,634,147 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624757	14,629,607 - 14,634,274 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Stbd1
45 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	415
Count of miRNA genes:	235
Interacting mature miRNAs:	287
Transcripts:	ENSRNOT00000003020
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300159	Bmd61	Bone mineral density QTL 61	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	14	1	26541967	Rat
2300183	Bmd60	Bone mineral density QTL 60	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	14	1	26541967	Rat
619619	Rf4	Renal disease susceptibility QTL 4	4.1	0.002	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	14	1	32754612	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41131407	Rat
70204	Niddm20	Non-insulin dependent diabetes mellitus QTL 20	5.1	0.000008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	1217606	16960180	Rat
2293089	Iddm31	Insulin dependent diabetes mellitus QTL 31	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	3813074	18274691	Rat
2293089	Iddm31	Insulin dependent diabetes mellitus QTL 31	4.7		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	14	3813074	18274691	Rat
1300114	Srn2	Serum renin concentration QTL 2	3.27		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	3813074	21217635	Rat
70195	Mcs8	Mammary carcinoma susceptibility QTL 8	4.28		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	14	3813074	24531477	Rat
1331740	Bw26	Body weight QTL 26	3.028		body mass (VT:0001259)	body weight (CMO:0000012)	14	3813074	30767156	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8267090	53267090	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8267090	53267090	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9088978	39057237	Rat
2302277	Gluco38	Glucose level QTL 38	5.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	28035204	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
631212	Bw5	Body weight QTL5	5.43		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	14	11030812	30320092	Rat
1300140	Srn3	Serum renin concentration QTL 3	3.19		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	14875168	30883947	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1	16	47	41	1	41	8	11		4	10	6	8
Low	2	27	10		18				74	31	27	5
Below cutoff											4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC103535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000003020 ⟹ ENSRNOP00000003020

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	15,470,448 - 15,477,443 (-)	Ensembl
Rnor_6.0 Ensembl	14	16,976,356 - 16,979,760 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119917 ⟹ ENSRNOP00000078314

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	15,469,582 - 15,473,869 (-)	Ensembl

RefSeq Acc Id:

NM_001013988 ⟹ NP_001014010

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	15,470,452 - 15,473,857 (-)	NCBI
Rnor_6.0	14	16,976,355 - 16,979,760 (-)	NCBI
Rnor_5.0	14	16,889,874 - 16,893,279 (-)	NCBI
RGSC_v3.4	14	17,031,752 - 17,035,157 (-)	RGD
Celera	14	14,865,243 - 14,868,648 (-)	RGD

Sequence:

show sequence

TGCGGGGTGAGTTGAGCCGTGCACCGGGACTCTTATTCTCCCGCAGCCTCTCAGCCATGGGCGC
CGTCTGGTCAGCCCTGCTGGTCGGCGGGGGTCTGGCCGGAGCGCTCATCCTGTGGCTGTTGCGG
GGTGACTCTGGGGCCCCGGGGAAAGACGGGGGTGCGGAGCCGCTGAAAGACGCACCTCCAGGGG
AGGCTGCGGCCCCGGGAGGCGGTCCGGGTGGTGGTGGCAGTGGCGGCCTGAGCCCTGAACCTTC
CGATCGGGAGCTGGTCTCCAAAGCAGAGCATCTTCGAGAGAGCAATGGACATTTGATTTCTGAG
AGCAAAGATCTTGGTAACCTGACGGAAGCACAGAGACTGCAGAATGTTGGCAATGCCAGAGAAT
ATGTTCCTGTGGGAAAGGTCCCAGATACACACTCCAGAGCTAACTCTGAAACGTCAAGAAATCA
AAGCCCAGAATCTCGTGTAGGCGAATGGAGACTCCCCAAAGGACACGAAACAGCTGTTAAAGTA
GCGGGCAGTGTGGCTGAGAAGCTGCCCTCCAGCAGCCCGCTCATGGACAGAGCTGAAGCAGCCA
GCCTTGCACAGTCGGCAGGCCACGAGGACTGGGAAGTGGTGTCTAGGCACTCGTCTTGGGGGAG
TGTTGGTTTGGGTGGCAGTCTTGAGGCTTCTAGGTTAAGTCTAAATCAGGGAATGGACGAGAGC
AGAAACAGTCTTGTGGGAGGGGGCTGGGAGGTAGATGGGAAGGTGGTGTCTGTGAAACCTCGGC
AGGTCAGCATCCAGTTCAAGGTGCACTACAGCACAAGCACTGACGTGCAGTTCATTGCAGTAAC
TGGAGACCACGAGAGTCTCGGGGGATGGAACACATACATCCCACTCCACTACTGCAAGGATGGG
CTCTGGTCTCATTCCGTCTTCCTGCCTGCGGACACAGTGGTAGAGTGGAAGTTTGTGTTGGTAG
AGAATAAGGAAGTTACTCGCTGGGAAGAATGCAGCAATAGACGCCTACAGACTGGCCATGAGGA
TAAAGTGGTTCATGGGTGGTGGGGGATTCACTGACTCGGCTTTCAGAGCATCCAAGAGGCTGCA
GCAGAACTCGGAAGAGGCTAAGGCTGTAGAGCACAGCGTAGTTTAAAGGCGGTGTTATTCTAAT
TGTAGCCATCACGGTTCCTTCAGATTTGCTAGTGTGGCTTTTGTCCAAAATGTAGGAAGATGTA
TGCATGCAGATAATGCTTCCTGTAGGCTGGCAGTTGTCCCTTGTTGTATCGACTGGCTTGTGCT
GACACATCATGACTTGAGGGATCGAGCATCCTGGGTAGTTGCTTTGGCTATGCCTGAGGTGTGG
ACTACATATGGGCAAGGAGAAACTAACCAACTGCAAGGGTAAAAGGCAGCCCTTAGGAGCTCTT
AGACTAGGAAGATTACAAACCTCATCATACACAGCTAAAGCAACACTGTTTACACTGATGATGG
CATCATAGGGAACTGTGACCAGTAAGTGAAACTCCGAGGCTCCCCGTTAGTCTCTTTTTAACTG
CTGAGGAGAGGTGGGACATAGCAGCTGTGTCTGTCTTAGTGGTTGGCAGCCCTGTTGAGAGTTG
GGCATCCAAGAAGCAGAGCCTGAGGGATTGGGGTGTGAGATGCTGAGGCTTGAAGGGTATAGTT
CTTTAGGAGCGAGAGTAGCAGGGCCAAGTCTGAGGCACCCCTCCCTTACCCACAGTGCCCCGGT
CAGACGGTCTTTGCCCACTGCCCTGCCCCACTCGAGGTCTCAGCAAATGGACTGCCCCAGAGAC
CTTTTCCATCTGTTAACTCTTCACTCTCCTGACTAAATACCTATATAGGACCATGGTACAGAAG
ATTGTCTGTGCTCGGAGAAGAAATAGTTAAGCTTTAAGTTATGACTGAATAAATAAATCCCAAG
TTTTACTATCTTTAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001014010	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89867	(Get FASTA)	NCBI Sequence Viewer
	EDL88644	(Get FASTA)	NCBI Sequence Viewer
	EDL88645	(Get FASTA)	NCBI Sequence Viewer
	Q5FVN1	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001014010 ⟸ NM_001013988

- UniProtKB:

Q5FVN1 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGAVWSALLVGGGLAGALILWLLRGDSGAPGKDGGAEPLKDAPPGEAAAPGGGPGGGGSGGLSP
EPSDRELVSKAEHLRESNGHLISESKDLGNLTEAQRLQNVGNAREYVPVGKVPDTHSRANSETS
RNQSPESRVGEWRLPKGHETAVKVAGSVAEKLPSSSPLMDRAEAASLAQSAGHEDWEVVSRHSS
WGSVGLGGSLEASRLSLNQGMDESRNSLVGGGWEVDGKVVSVKPRQVSIQFKVHYSTSTDVQFI
AVTGDHESLGGWNTYIPLHYCKDGLWSHSVFLPADTVVEWKFVLVENKEVTRWEECSNRRLQTG
HEDKVVHGWWGIH

hide sequence

RefSeq Acc Id:

ENSRNOP00000003020 ⟸ ENSRNOT00000003020

RefSeq Acc Id:

ENSRNOP00000078314 ⟸ ENSRNOT00000119917

Protein Domains

CBM20

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5FVN1-F1-model_v2	AlphaFold	Q5FVN1	1-333	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699208

Promoter ID:

EPDNEW_R9733

Type:

initiation region

Name:

Stbd1_1

Description:

starch binding domain 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	16,979,726 - 16,979,786	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311800	AgrOrtholog
BioCyc Gene	G2FUF-16270	BioCyc
Ensembl Genes	ENSRNOG00000002218	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000003020.5	UniProtKB/TrEMBL
	ENSRNOP00000078314	ENTREZGENE
	ENSRNOP00000078314.1	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000003020.5	UniProtKB/TrEMBL
	ENSRNOT00000119917	ENTREZGENE
	ENSRNOT00000119917.1	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7321620	IMAGE-MGC_LOAD
InterPro	Carb-bd-like_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CBM20_genethonin_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CBM_fam20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:305234	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:108973	IMAGE-MGC_LOAD
NCBI Gene	305234	ENTREZGENE
PANTHER	STARCH-BINDING DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
	STARCH-BINDING DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
	STARCH-BINDING DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	STARCH-BINDING DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	CBM_20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Stbd1	PhenoGen
PROSITE	CBM20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	CBM_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF49452	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8L2Q1E5_RAT	UniProtKB/TrEMBL
	Q5FVN1	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-27	Stbd1	starch binding domain 1	RGD1311800	similar to genethonin 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1311800	similar to genethonin 1	RGD1311800_predicted	similar to genethonin 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1311800_predicted	similar to genethonin 1 (predicted)	LOC305234_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC305234_predicted	similar to genethonin 1 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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