Rab3gap1 (RAB3 GTPase activating protein catalytic subunit 1) - Rat Genome Database

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Gene: Rab3gap1 (RAB3 GTPase activating protein catalytic subunit 1) Rattus norvegicus
Analyze
Symbol: Rab3gap1
Name: RAB3 GTPase activating protein catalytic subunit 1
RGD ID: 1306487
Description: Enables GTPase activator activity. Predicted to be involved in several processes, including modulation of chemical synaptic transmission; positive regulation of cellular biosynthetic process; and positive regulation of organelle organization. Located in excitatory synapse. Human ortholog(s) of this gene implicated in Warburg micro syndrome 1. Orthologous to human RAB3GAP1 (RAB3 GTPase activating protein catalytic subunit 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; rotenone.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC304759; RAB3 GTPase activating protein subunit 1; RAB3 GTPase-activating protein 130 kDa subunit; rab3 GTPase-activating protein catalytic subunit; Rab3-GAP; rab3-GAP p130; RGD1306487; similar to RAB3 GTPase-activating protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81341,908,179 - 41,981,611 (+)NCBIGRCr8
mRatBN7.21339,355,698 - 39,429,154 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1339,352,247 - 39,429,169 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1341,941,540 - 42,015,466 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01343,229,653 - 43,303,577 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01340,492,442 - 40,565,813 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01344,578,208 - 44,649,876 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1344,615,553 - 44,648,620 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01349,662,265 - 49,734,485 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41340,594,232 - 40,636,723 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1339,730,571 - 39,803,671 (+)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Neuroligin-1 performs neurexin-dependent and neurexin-independent functions in synapse validation. Ko J, etal., EMBO J. 2009 Oct 21;28(20):3244-55. doi: 10.1038/emboj.2009.249. Epub 2009 Sep 3.
3. Molecular cloning and characterization of the noncatalytic subunit of the Rab3 subfamily-specific GTPase-activating protein. Nagano F, etal., J Biol Chem. 1998 Sep 18;273(38):24781-5.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9030515   PMID:10859313   PMID:11809763   PMID:15057822   PMID:16782817   PMID:16923123   PMID:19056867   PMID:20512159   PMID:24239381   PMID:24891604   PMID:25495476  


Genomics

Comparative Map Data
Rab3gap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81341,908,179 - 41,981,611 (+)NCBIGRCr8
mRatBN7.21339,355,698 - 39,429,154 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1339,352,247 - 39,429,169 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1341,941,540 - 42,015,466 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01343,229,653 - 43,303,577 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01340,492,442 - 40,565,813 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01344,578,208 - 44,649,876 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1344,615,553 - 44,648,620 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01349,662,265 - 49,734,485 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41340,594,232 - 40,636,723 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1339,730,571 - 39,803,671 (+)NCBICelera
Cytogenetic Map13q13NCBI
RAB3GAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382135,052,292 - 135,176,396 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2135,052,289 - 135,176,667 (+)EnsemblGRCh38hg38GRCh38
GRCh372135,809,862 - 135,928,280 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362135,526,323 - 135,644,029 (+)NCBINCBI36Build 36hg18NCBI36
Celera2129,522,764 - 129,641,200 (+)NCBICelera
Cytogenetic Map2q21.3NCBI
HuRef2127,801,500 - 127,920,838 (+)NCBIHuRef
CHM1_12135,814,735 - 135,933,197 (+)NCBICHM1_1
T2T-CHM13v2.02135,492,756 - 135,617,244 (+)NCBIT2T-CHM13v2.0
Rab3gap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391127,796,492 - 127,871,612 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1127,796,510 - 127,871,605 (+)EnsemblGRCm39 Ensembl
GRCm381127,868,755 - 127,943,876 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1127,868,773 - 127,943,868 (+)EnsemblGRCm38mm10GRCm38
MGSCv371129,765,350 - 129,840,453 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361129,696,338 - 129,771,414 (+)NCBIMGSCv36mm8
Celera1130,509,898 - 130,572,512 (+)NCBICelera
Cytogenetic Map1E3NCBI
cM Map155.8NCBI
Rab3gap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554402,550,982 - 2,646,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554402,551,015 - 2,645,938 (+)NCBIChiLan1.0ChiLan1.0
RAB3GAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21339,761,351 - 39,879,611 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B39,776,321 - 39,894,945 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B24,692,363 - 24,810,685 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B139,125,374 - 139,248,010 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B139,125,375 - 139,242,721 (+)Ensemblpanpan1.1panPan2
RAB3GAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11937,861,844 - 38,006,433 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1937,861,804 - 37,963,501 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1938,101,848 - 38,250,489 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01939,307,155 - 39,452,060 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1939,307,185 - 39,409,083 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11937,949,574 - 38,094,207 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01938,110,488 - 38,255,025 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01939,345,841 - 39,490,314 (+)NCBIUU_Cfam_GSD_1.0
Rab3gap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303100,889,929 - 100,975,780 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646940,641,928 - 40,727,837 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646940,642,240 - 40,727,831 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB3GAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1516,763,990 - 16,816,754 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11516,756,368 - 16,893,148 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21519,210,946 - 19,269,571 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB3GAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11019,295,294 - 19,401,595 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1019,295,351 - 19,402,212 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660613,097,933 - 3,204,848 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab3gap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473234,450,630 - 34,593,675 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473234,450,616 - 34,593,675 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab3gap1
444 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:122
Interacting mature miRNAs:157
Transcripts:ENSRNOT00000005289
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133039535141184251Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
2292232Pur16Proteinuria QTL 1617.2urine total protein amount (VT:0000032)urine protein level (CMO:0000591)133615572341961389Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat

Markers in Region
D13Hmgc85  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01344,588,357 - 44,588,509NCBIRnor6.0
Celera1339,740,890 - 39,741,040UniSTS
Cytogenetic Map13q12UniSTS
AI013755  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21339,428,984 - 39,429,095 (+)MAPPERmRatBN7.2
Rnor_6.01344,649,707 - 44,649,817NCBIRnor6.0
Rnor_5.01349,734,316 - 49,734,426UniSTSRnor5.0
RGSC_v3.41340,636,553 - 40,636,663UniSTSRGSC3.4
Celera1339,803,502 - 39,803,612UniSTS
RH 3.4 Map1393.0UniSTS
Cytogenetic Map13q12UniSTS
BF398383  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21339,426,328 - 39,426,486 (+)MAPPERmRatBN7.2
Rnor_6.01344,647,051 - 44,647,208NCBIRnor6.0
Rnor_5.01349,731,660 - 49,731,817UniSTSRnor5.0
RGSC_v3.41340,633,897 - 40,634,054UniSTSRGSC3.4
Celera1339,800,846 - 39,801,003UniSTS
RH 3.4 Map1393.8UniSTS
Cytogenetic Map13q12UniSTS
UniSTS:234205  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21339,428,531 - 39,428,741 (+)MAPPERmRatBN7.2
Rnor_6.01344,649,254 - 44,649,463NCBIRnor6.0
Rnor_5.01349,733,863 - 49,734,072UniSTSRnor5.0
RGSC_v3.41340,636,100 - 40,636,309UniSTSRGSC3.4
Celera1339,803,049 - 39,803,258UniSTS
Cytogenetic Map13q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 57 41 19 41 8 11 74 35 41 11 8
Low 1
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000005289   ⟹   ENSRNOP00000005289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1339,355,734 - 39,429,169 (+)Ensembl
Rnor_6.0 Ensembl1344,615,553 - 44,648,620 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082439   ⟹   ENSRNOP00000070191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1339,360,383 - 39,429,153 (+)Ensembl
Rnor_6.0 Ensembl1344,615,553 - 44,648,620 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101602   ⟹   ENSRNOP00000087169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1339,352,247 - 39,429,153 (+)Ensembl
RefSeq Acc Id: NM_001402216   ⟹   NP_001389145
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81341,908,217 - 41,981,611 (+)NCBI
mRatBN7.21339,355,754 - 39,429,154 (+)NCBI
RefSeq Acc Id: NM_001402314   ⟹   NP_001389243
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81341,908,217 - 41,981,611 (+)NCBI
mRatBN7.21339,355,754 - 39,429,154 (+)NCBI
RefSeq Acc Id: XR_005492430
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81341,908,179 - 41,976,134 (+)NCBI
mRatBN7.21339,355,698 - 39,429,154 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001389145 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389243 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005289
  ENSRNOP00000005289.8
  ENSRNOP00000070191.2
  ENSRNOP00000087169
  ENSRNOP00000087169.1
GenBank Protein P69735 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: ENSRNOP00000070191   ⟸   ENSRNOT00000082439
RefSeq Acc Id: ENSRNOP00000005289   ⟸   ENSRNOT00000005289
RefSeq Acc Id: ENSRNOP00000087169   ⟸   ENSRNOT00000101602
RefSeq Acc Id: NP_001389243   ⟸   NM_001402314
- Peptide Label: isoform 1
- UniProtKB: F1LP59 (UniProtKB/TrEMBL),   A0A8I6A7Y5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389145   ⟸   NM_001402216
- Peptide Label: isoform 2
- UniProtKB: A0A8I6A7Y5 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P69735-F1-model_v2 AlphaFold P69735 1-775 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306487 AgrOrtholog
BioCyc Gene G2FUF-18427 BioCyc
Ensembl Genes ENSRNOG00000003953 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005289 ENTREZGENE
  ENSRNOT00000005289.8 UniProtKB/TrEMBL
  ENSRNOT00000082439.2 UniProtKB/TrEMBL
  ENSRNOT00000101602 ENTREZGENE
  ENSRNOT00000101602.1 UniProtKB/TrEMBL
InterPro Rab3-GAP_cat_su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab3GAP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab3GAP1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene Rab3gap1 ENTREZGENE
PANTHER PTHR21422 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Rab3-GAP_cat_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab3-GTPase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rab3gap1 PhenoGen
RatGTEx ENSRNOG00000003953 RatGTEx
UniProt A0A0G2JXA1_RAT UniProtKB/TrEMBL
  A0A8I6A7Y5 ENTREZGENE, UniProtKB/TrEMBL
  F1LP59 ENTREZGENE, UniProtKB/TrEMBL
  P69735 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-24 Rab3gap1  RAB3 GTPase activating protein catalytic subunit 1  Rab3gap1  RAB3 GTPase activating protein subunit 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-12-04 Rab3gap1  RAB3 GTPase activating protein subunit 1  Rab3gap1  RAB3 GTPase activating protein subunit 1  Type changed (type changed from [predicted-high] to [protein-coding]) 629549 APPROVED
2014-08-14 Rab3gap1  RAB3 GTPase activating protein subunit 1  RGD1306487  similar to RAB3 GTPase-activating protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1306487  similar to RAB3 GTPase-activating protein   RGD1306487_predicted  similar to RAB3 GTPase-activating protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1306487_predicted  similar to RAB3 GTPase-activating protein (predicted)  LOC304759_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC304759_predicted  similar to RAB3 GTPase-activating protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL