Cm76 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Cm76 (Cardiac mass QTL 76) Rattus norvegicus

Symbol: Cm76
Name: Cardiac mass QTL 76
RGD ID: 6893338
Trait: heart mass   (VT:0007028)    
Measurement Type: heart weight to body weight ratio   (CMO:0000074)    
LOD Score: 0.0
P Value: 0.99
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81326,244,808 - 71,244,808RGD_MAPPER_PIPELINE
mRatBN7.21323,692,969 - 68,692,969RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01329,076,934 - 74,076,934RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01334,129,640 - 79,129,640RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41325,198,204 - 70,198,204RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: SHRSP/Tkyo WKY/Tkyo 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cm76RatLeft Ventricular Hypertrophy  IAGP 1554311 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cm76Ratincreased heart weight  IDA 1554311 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cm76Ratheart weight to body weight ratio  IDA 1554311originally annotated as CMO:0000075, heart weight as percentage of body weightRGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cm76Ratcontrolled sodium content diet  IDA 1554311 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cm76Ratpost excision weight measurement  IDA 1554311 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cm76RatSHRSP/Tkyo  IEA 1554311 RGD 
Cm76RatWKY/Tkyo  IEA 1554311 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cm76Ratheart mass  IDA 1554311 RGD 


#
Reference Title
Reference Citation
1. Identification of quantitative trait loci for cardiac hypertrophy in two different strains of the spontaneously hypertensive rat. Inomata H, etal., Hypertens Res 2005 Mar;28(3):273-81.


1 to 20 of 493 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1583819Gapdh-ps7Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 7132382125223822604Rat
41010849LOC120096395small nucleolar RNA SNORA17132396296623963097Rat
11474113Ervk-21l1endogenous retrovirus group K member 21 Env polyprotein-like 1132561754425619382Rat
11477275LOC108353429endogenous retrovirus group K member 10 Gag polyprotein-like132562263025625688Rat
1560523Mat2al1methionine adenosyltransferase 2A like 1132608899726090862Rat
1565627Hmgb1-ps17high-mobility group box 1, pseudogene 17132613486826138359Rat
41152662LOC120096381small nucleolar RNA SNORD50132615472426154795Rat
1598193Mpeg1-ps1macrophage expressed 1, pseudogene 1132622188026223810Rat
41333015LOC120096411small nucleolar RNA SNORA17132623216626232296Rat
1594585Arrb1-ps1arrestin, beta 1, pseudogene 1132651087826512979Rat
9209511LOC103691611cyclin-dependent kinases regulatory subunit 1 pseudogene132656388326564406Rat
1306856Cdh7cadherin 7132667205826821571Rat
41244932LOC120096442U6 spliceosomal RNA132696330326963409Rat
11414926LOC10835261540S ribosomal protein S28 pseudogene132697477926974991Rat
2324722Tmem64-ps1transmembrane protein 64, pseudogene 1132721750627283978Rat
1583818Hnrnpa1-ps1heterogeneous nuclear ribonucleoprotein A1, pseudogene 1132734503327346526Rat
1562794Esco1-ps1establishment of sister chromatid cohesion N-acetyltransferase 1, pseudogene 1132744092127444431Rat
2323366Upf3b-ps1UPF3B, regulator of nonsense mediated mRNA decay, pseudogene 1132757265027597288Rat
41082629Trnaa-agc67transfer RNA alanine (anticodon AGC) 67132760763127607705Rat
1307169Cdh19cadherin 19132793591528047490Rat

1 to 20 of 493 rows
1 to 20 of 719 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10461D13Wox14199133124132831241527Ratregion
10462D13Mgh13133133124133131241464Ratregion
10809D13Mgh16144133053197730532123Ratregion
11084D13Mgh12125134215553442155659Ratregion
11115D13Mgh7418136202237462022792Ratregion
11232D13Arb7315134480209344802410Ratregion
33935D13Mit8206134529565245295858Ratregion
33947D13Mit9160135305043453050594Ratregion
34140D13Mgh2132133181339931813531Ratregion
34351D13Mgh4142133741558437415726Ratregion
34371D13Mgh3132133453521834535351Ratregion
34534D13Mgh5140136105793861058078Ratregion
11375D13Arb8195134619287246193066Ratregion
11433D13Mgh15525134728269847283224Ratregion
33733D13Mit2202135987440859874610Ratregion
35997D13Rat26169135478438754784556Ratregion
36033D13Rat29164136490158664901750Ratregion
36069D13Rat23166134570337045703527Ratregion
37314D13Rat101180134784107547841255Ratregion
37408D13Rat103177133173245731732634Ratregion
1 to 20 of 719 rows

Peak: (D13Arb8)
Rat AssemblyChrPosition (strand)Source
GRCr81348,744,711 - 48,744,906 (+)Marker Load Pipeline
mRatBN7.21346,192,872 - 46,193,066 (+)MAPPER
Rnor_6.01351,576,838 - 51,577,031NCBI
Rnor_5.01356,629,544 - 56,629,737UniSTS
RGSC_v3.41347,698,108 - 47,698,301UniSTS
Celera1346,519,637 - 46,519,830UniSTS
RH 3.4 Map13172.5UniSTS
SHRSP x BN Map1314.7798UniSTS
SHRSP x BN Map1314.7798RGD
Cytogenetic Map13q13UniSTS


1 to 10 of 59 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133466346187525369Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
12879436Bp395Blood pressure QTL 395arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134463918245700190Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
61453Pur1Proteinuria QTL 118.06urine total protein amount (VT:0000032)urine protein level (CMO:0000591)133453521837415726Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940445516593Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133039535141184251Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat

1 to 10 of 59 rows


Note Type Note Reference
qtl_general number of animals used: 110 F2 females 1554311
qtl_general software used: MAPMAKER/QTL 1.1 1554311