Ndufv3-ps1 (NADH:ubiquinone oxidoreductase subunit V3, pseudogene 1) - Rat Genome Database

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Gene: Ndufv3-ps1 (NADH:ubiquinone oxidoreductase subunit V3, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Ndufv3-ps1
Name: NADH:ubiquinone oxidoreductase subunit V3, pseudogene 1
RGD ID: 1583292
Description: Orthologous to human NDUFV3 (NADH:ubiquinone oxidoreductase subunit V3); INTERACTS WITH (+)-schisandrin B; ammonium chloride; tetrachloromethane.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: LOC685005; NADH dehydrogenase (ubiquinone) flavoprotein 3, pseudogene 1; similar to NADH-ubiquinone oxidoreductase 9 kDa subunit, mitochondrial precursor (Complex I-9KD) (CI-9KD)
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Ndufv3  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,468,243 - 48,468,676 (-)NCBIGRCr8
mRatBN7.21345,916,240 - 45,916,673 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,916,312 - 45,916,638 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1348,523,458 - 48,523,891 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,811,526 - 49,811,959 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01347,075,850 - 47,076,283 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,297,223 - 51,297,656 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,297,295 - 51,297,621 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01356,353,892 - 56,355,677 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41347,416,560 - 47,416,955 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1346,244,046 - 46,244,479 (-)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9281354   PMID:12477932   PMID:15489334   PMID:25002582  


Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134372077062022792Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134343790447841255Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134522835847841255Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat

Markers in Region
RH129486  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2209,621,420 - 9,621,604 (+)MAPPERmRatBN7.2
mRatBN7.21345,916,257 - 45,916,441 (-)MAPPERmRatBN7.2
mRatBN7.21345,916,257 - 45,916,441 (+)MAPPERmRatBN7.2
mRatBN7.2209,621,420 - 9,621,604 (-)MAPPERmRatBN7.2
Rnor_6.02010,275,097 - 10,275,280NCBIRnor6.0
Rnor_6.01351,297,241 - 51,297,424NCBIRnor6.0
Rnor_5.01356,353,905 - 56,354,088UniSTSRnor5.0
Rnor_5.02012,464,410 - 12,464,593UniSTSRnor5.0
RGSC_v3.41347,416,575 - 47,416,758UniSTSRGSC3.4
RGSC_v3.4209,960,064 - 9,960,247UniSTSRGSC3.4
Celera2011,135,285 - 11,135,468UniSTS
Celera1346,244,064 - 46,244,247UniSTS
Cytogenetic Map13q13UniSTS
Cytogenetic Map20p12UniSTS
RH129888  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,916,291 - 45,916,488 (+)MAPPERmRatBN7.2
mRatBN7.2209,621,393 - 9,621,570 (-)MAPPERmRatBN7.2
Rnor_6.01351,297,275 - 51,297,471NCBIRnor6.0
Rnor_5.01356,353,939 - 56,354,135UniSTSRnor5.0
RGSC_v3.41347,416,609 - 47,416,805UniSTSRGSC3.4
Celera1346,244,098 - 46,244,294UniSTS
Cytogenetic Map13q13UniSTS
Cytogenetic Map20p12UniSTS


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000030926   ⟹   ENSRNOP00000038094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1345,916,312 - 45,916,638 (-)Ensembl
Rnor_6.0 Ensembl1351,297,295 - 51,297,621 (-)Ensembl
RefSeq Acc Id: XR_591713
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1346,244,051 - 46,244,477 (-)NCBI
RefSeq Acc Id: XR_595472
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01351,297,195 - 51,297,654 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1583292 AgrOrtholog
BioCyc Gene G2FUF-18229 BioCyc
Ensembl Genes ENSRNOG00000027593 Ensembl
NCBI Gene 685005 ENTREZGENE
PhenoGen Ndufv3-ps1 PhenoGen
RatGTEx ENSRNOG00000027593 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-28 Ndufv3-ps1  NADH:ubiquinone oxidoreductase subunit V3, pseudogene 1  Ndufv3-ps1  NADH dehydrogenase (ubiquinone) flavoprotein 3, pseudogene 1  Name changed 629549 APPROVED
2013-05-24 Ndufv3-ps1  NADH dehydrogenase (ubiquinone) flavoprotein 3, pseudogene 1  LOC682566  similar to NADH-ubiquinone oxidoreductase 9 kDa subunit, mitochondrial precursor (Complex I-9KD) (CI-9KD)  Data merged from RGD:1597910 1643240 APPROVED
2009-01-23 Ndufv3-ps1  NADH dehydrogenase (ubiquinone) flavoprotein 3, pseudogene 1  LOC685005  similar to NADH-ubiquinone oxidoreductase 9 kDa subunit, mitochondrial precursor (Complex I-9KD) (CI-9KD)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC682566  similar to NADH-ubiquinone oxidoreductase 9 kDa subunit, mitochondrial precursor (Complex I-9KD) (CI-9KD)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC685005  similar to NADH-ubiquinone oxidoreductase 9 kDa subunit, mitochondrial precursor (Complex I-9KD) (CI-9KD)      Symbol and Name status set to provisional 70820 PROVISIONAL