Rpl36a-ps14 (ribosomal protein L36A, pseudogene 14) - Rat Genome Database

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Gene: Rpl36a-ps14 (ribosomal protein L36A, pseudogene 14) Rattus norvegicus
Analyze
Symbol: Rpl36a-ps14
Name: ribosomal protein L36A, pseudogene 14
RGD ID: 2320539
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC100361224; ribosomal protein L36a-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81345,596,299 - 45,597,232 (+)NCBIGRCr8
mRatBN7.21343,035,130 - 43,044,764 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01348,355,704 - 48,365,764 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01353,425,431 - 53,441,048 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,534,272 - 44,536,848 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1343,373,495 - 43,383,072 (+)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Rpl36a-ps14
171 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133466346187525369Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
2303032Bp328Blood pressure QTL 328arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134118402245417941Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat

Markers in Region
D13Wox24  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21343,037,363 - 43,037,529 (+)MAPPERmRatBN7.2
mRatBN7.21343,037,363 - 43,037,936 (+)MAPPERmRatBN7.2
Rnor_6.01348,357,938 - 48,358,105NCBIRnor6.0
Rnor_6.01348,357,938 - 48,358,594NCBIRnor6.0
Rnor_5.01353,433,172 - 53,433,828UniSTSRnor5.0
Rnor_5.01353,433,172 - 53,433,339UniSTSRnor5.0
RGSC_v3.41344,527,482 - 44,527,649UniSTSRGSC3.4
Celera1343,375,728 - 43,375,881UniSTS
Cytogenetic Map13 RGD
RH138039  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21343,032,710 - 43,032,948 (+)MAPPERmRatBN7.2
Rnor_6.01348,353,285 - 48,353,522NCBIRnor6.0
Rnor_5.01353,428,519 - 53,428,756UniSTSRnor5.0
RGSC_v3.41344,522,830 - 44,523,067UniSTSRGSC3.4
Celera1343,371,076 - 43,371,313UniSTS
RH 3.4 Map13110.8UniSTS


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_003751239   ⟹   XP_003751287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01353,425,431 - 53,441,048 (+)NCBI
RefSeq Acc Id: XM_003752661   ⟹   XP_003752709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1343,382,736 - 43,383,072 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-18345 BioCyc
NCBI Gene 100361224 ENTREZGENE
PhenoGen Rpl36a-ps14 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Rpl36a-ps14  ribosomal protein L36A, pseudogene 14  LOC100361224  ribosomal protein L36a-like  Symbol and Name Changed 1299863 APPROVED
2010-05-05 LOC100361224  ribosomal protein L36a-like      Symbol and Name status set to provisional 70820 PROVISIONAL