Cardf1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Cardf1 (Cardiac cell morphology QTL 1) Rattus norvegicus

Symbol: Cardf1
Name: Cardiac cell morphology QTL 1
RGD ID: 1300163
Previously known as: Specialized Center of Research QTL 124; SCOR124; Cc1
Trait: aorta morphology trait   (VT:0000272)    
Measurement Type: artery lesion measurement   (CMO:0000975)    
LOD Score: 4.18
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21311,929,449 - 45,417,941RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01314,441,582 - 50,799,665RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01319,680,631 - 55,853,202RGDRnor5.0
RGSC_v3.4131,265,159 - 46,912,163RGDRGSC3.4
RGSC_v3.1131,265,159 - 46,926,206RGD
Cross Type: Not Available
Strains Crossed: BN/SsNHsd SS/JrHsdMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method
necropsy  (IDA)

Vertebrate Trait

Rat Strain
BN/SsNHsd  (IEA)
SS/JrHsdMcwi  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genomic map of cardiovascular phenotypes of hypertension in female Dahl S rats. Moreno C, etal., Physiol Genomics 2003 Nov 11;15(3):243-57. Epub 2003 Oct 07.
2. A genomic-systems biology map for cardiovascular function. Stoll M, etal., Science 2001 Nov 23;294(5547):1723-6.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1592077Cntnap5bl1contactin associated protein family member 5B like 1131185376112864307Rat
41289916LOC120096412small nucleolar RNA SNORA17131224084912240975Rat
7529420Eif4a1-ps1eukaryotic translation initiation factor 4A1, pseudogene 1131251196712513501Rat
41325179Trnap-ggg8transfer RNA proline (anticodon GGG) 8131316820113168282Rat
1585944Phb1-ps16prohibitin 1, pseudogene 16131369533213696148Rat
1593260Hspd1-ps8heat shock protein family D (Hsp60) member 1, pseudogene 8131404430914046528Rat
1583413Josd1-ps1Josephin domain containing 1, pseudogene 1131469931614699912Rat
9117769LOC103691598methionine adenosyltransferase 2 subunit beta pseudogene131483603514836975Rat
2321136Smyd3-ps1SET and MYND domain containing 3, pseudogene 1131504460815045633Rat
9091700LOC103691604uncharacterized LOC103691604131531458815381026Rat
1584807Rps4x-ps11ribosomal protein S4, X-linked, pseudogene 11131534048915341938Rat
40995925LOC120096444U6 spliceosomal RNA131586392815864034Rat
2318305Ccdc28a-ps1coiled-coil domain containing 28A, pseudogene 1131593217815932833Rat
1561440Nlkl1Nlk like 1131593455015939076Rat
1594544Kif13a-ps1kinesin family member 13A, pseudogene 1131601713416021538Rat
41182474LOC120096227uncharacterized LOC120096227131690459316910352Rat
11457739LOC108352514uncharacterized LOC108352514131690756616931271Rat
6490239Btf3-ps3basic transcription factor 3, pseudogene 3131723827017239523Rat
41026629Dnajc14-ps1DnaJ heat shock protein family (Hsp40) member C14, pseudogene 1131727147617273698Rat
1598145Gemin8-ps4gem (nuclear organelle) associated protein 8, pseudogene 4131769333317694256Rat
1565194Cntnap5bcontactin associated protein family member 5B131786336718766983Rat
41165395LOC120096398small nucleolar RNA SNORA17131842296618423097Rat
9400371Ppp1r14bl1protein phosphatase 1, regulatory (inhibitor) subunit 14B like 1131952200919522605Rat
1596843Hmgb3-ps2high mobility group box 3, pseudogene 2132060090720601478Rat
1305438Cdh20cadherin 20132073764021069746Rat
7498875LOC102547165uncharacterized LOC102547165132105507721068613Rat
1305251Rnf152ring finger protein 152132132403921403405Rat
6487798Fau-ps3FAU ubiquitin like and ribosomal protein S30 fusion, pseudogene 3132162910221629445Rat
1311346Pignphosphatidylinositol glycan anchor biosynthesis, class N132165909221812932Rat
1307235RelchRAB11 binding and LisH domain, coiled-coil and HEAT repeat containing132180697221902807Rat
41316489Trnah-aug1transfer RNA histidin (anticodon AUG) 1132190993821910012Rat
1563614Tnfrsf11aTNF receptor superfamily member 11A132192837021986719Rat
41181148Gapdh-ps44Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 44132199505421996060Rat
11469342LOC108352516uncharacterized LOC108352516132201820222027872Rat
7701520LOC102550337uncharacterized LOC102550337132202801022042859Rat
7641700LOC102550524uncharacterized LOC102550524132206441822111976Rat
1310626Zcchc2zinc finger CCHC-type containing 2132211867722193626Rat
621308Phlpp1PH domain and leucine rich repeat protein phosphatase 1132230853222530978Rat
11394992LOC108352518uncharacterized LOC108352518132258998722598210Rat
2199Bcl2BCL2, apoptosis regulator132268978322853920Rat
41131179LOC120096229uncharacterized LOC120096229132273222722739137Rat
1307775Kdsr3-ketodihydrosphingosine reductase132286211722894118Rat
1305969Vps4bvacuolar protein sorting 4 homolog B132290710522932200Rat
69342Serpinb5serpin family B member 5132298555723005756Rat
1566382Serpinb12serpin family B member 12132305238423083691Rat
1304661Serpinb13serpin family B member 13132311858223150352Rat
1562868Serpinb3aserpin family B member 3A132324130323246328Rat
41010017LOC120096217protein PRRC2B-like132325107023256472Rat
1549766Serpinb3serpin family B member 3132327412023280660Rat
1306497Serpinb11serpin family B member 11132330477523344604Rat
7576045LOC102553197uncharacterized LOC102553197132332281923336975Rat
1591786Tpt1-ps3tumor protein, translationally-controlled 1 pseudogene 3132336539723369042Rat
71063Serpinb7serpin family B member 7132336983023442205Rat
41128384LOC120096417small nucleolar RNA SNORA17132341396723414096Rat
621823Serpinb2serpin family B member 2132353731223551823Rat
628853Serpinb10serpin family B member 10132355334823571182Rat
1309833Serpinb8serpin family B member 8132362693623650277Rat
1583819Gapdh-ps7Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 7132382125223822604Rat
41010849LOC120096395small nucleolar RNA SNORA17132396296623963097Rat
11474113Ervk-21l1endogenous retrovirus group K member 21 Env polyprotein-like 1132561754425619382Rat
11477275LOC108353429endogenous retrovirus group K member 10 Gag polyprotein-like132562263025625688Rat
1560523Mat2al1methionine adenosyltransferase 2A like 1132608899726090862Rat
1565627Hmgb1-ps17high-mobility group box 1, pseudogene 17132613486826138359Rat
41152662LOC120096381small nucleolar RNA SNORD50132615472426154795Rat
1598193Mpeg1-ps1macrophage expressed 1, pseudogene 1132622188026223810Rat
41333015LOC120096411small nucleolar RNA SNORA17132623216626232296Rat
1594585Arrb1-ps1arrestin, beta 1, pseudogene 1132651087826512979Rat
9209511LOC103691611cyclin-dependent kinases regulatory subunit 1 pseudogene132656388326564406Rat
1306856Cdh7cadherin 7132667205826821571Rat
41244932LOC120096442U6 spliceosomal RNA132696330326963409Rat
11414926LOC10835261540S ribosomal protein S28 pseudogene132697477926974991Rat
2324722Tmem64-ps1transmembrane protein 64, pseudogene 1132721750627283978Rat
1583818Hnrnpa1-ps1heterogeneous nuclear ribonucleoprotein A1, pseudogene 1132734503327346526Rat
1562794Esco1-ps1establishment of sister chromatid cohesion N-acetyltransferase 1, pseudogene 1132744092127444431Rat
2323366Upf3b-ps1UPF3B, regulator of nonsense mediated mRNA decay, pseudogene 1132757265027597288Rat
41082629Trnaa-agc67transfer RNA alanine (anticodon AGC) 67132760763127607705Rat
1307169Cdh19cadherin 19132793591528047490Rat
41228947LOC120096433U2 spliceosomal RNA132796494127965064Rat
7629682Eef2-ps1eukaryotic translation elongation factor 2, pseudogene 1132800777028011026Rat
1583817Dpp3-ps2dipeptidyl peptidase 3, pseudogene 1132815238128153944Rat
11501111LOC108352638dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4-like132835770028357816Rat
1561585Slc35a4-ps1solute carrier family 35, member A4, pseudogene 1132863615128637134Rat
41083747LOC120096235SLC35A4 upstream open reading frame protein-like132863752528637836Rat
6496985Eef2k-ps1eukaryotic elongation factor-2 kinase, pseudogene 1132887600128880880Rat
1559752Tcf4-ps1transcription factor 4, pseudogene 1132888301128884382Rat
1596977Mcts1-ps2MCTS1, re-initiation and release factor, pseudogene 2132899512328995667Rat
621107Tsntranslin132936640529377251Rat
708462Nifknucleolar protein interacting with the FHA domain of MKI67132939330329403387Rat
7688772LOC10254702160S ribosomal protein L7-like132948435529485077Rat
1310970Clasp1cytoplasmic linker associated protein 1132949355429715151Rat
7517596Hsp90aa1-ps5heat shock protein 90 alpha family class A member 1, pseudogene 5132949450229497346Rat
41247988LOC120096397small nucleolar RNA SNORA17132956172329561851Rat
41059766LOC120096423U4atac minor spliceosomal RNA132956736129567485Rat
1305456Tfcp2l1transcription factor CP2-like 1132973381329793870Rat
41122660LOC120096197uncharacterized LOC120096197132984957129856937Rat
40953093LOC120096434U2 spliceosomal RNA132988468829884743Rat
41145667Rps10-ps15ribosomal protein S10, pseudogene 15132991337829914001Rat
1585916Ube2s-ps1ubiquitin-conjugating enzyme E2S, pseudogene 1132992363129942719Rat
1309270Gli2GLI family zinc finger 2132994688230163589Rat
2913Inhbbinhibin subunit beta B133053086030536566Rat
619852RalbRAS like proto-oncogene B133058803630624199Rat
1309602Tmem185btransmembrane protein 185B133064753330650864Rat
41208883LOC120096454U6 spliceosomal RNA133065190530652011Rat
1311366Epb41l5erythrocyte membrane protein band 4.1 like 5133067079230770213Rat
620712Ptpn4protein tyrosine phosphatase, non-receptor type 4133077201230952340Rat
41255751Ankrd49-ps2ankyrin repeat domain 49, pseudogene 2133094031230946968Rat
41082826LOC120096199uncharacterized LOC120096199133098178530983255Rat
1310320Tmem177transmembrane protein 177133102389331027368Rat
1584968Cfap221cilia and flagella associated protein 221133104655031118141Rat
621342Sctrsecretin receptor133112778131190162Rat
628689Tmem37transmembrane protein 37133118432231191477Rat
2490Dbidiazepam binding inhibitor133124146631249853Rat
1594584C13h2orf76similar to chromosome 2 open reading frame 76133124973331335367Rat
708552Steap3STEAP3 metalloreductase133135195431397344Rat
1594583C1ql2complement C1q like 2133147115031472685Rat
1589662Marcomacrophage receptor with collagenous structure133161627831648521Rat
1595088En1engrailed homeobox 1133175089231756477Rat
1565260Tpt1-ps1tumor protein, translationally-controlled 1, pseudogene 1133212170732122385Rat
41303516LOC120096233uncharacterized LOC120096233133225144632288690Rat
631417Insig2insulin induced gene 2133247239032500139Rat
1560504Ccdc93coiled-coil domain containing 93133260761832675993Rat
62388Htr5b5-hydroxytryptamine (serotonin) receptor 5B133268691132699835Rat
1549712Ddx18DEAD-box helicase 18133272969732743161Rat
6490323Hnrnpa1-ps50heterogeneous nuclear ribonucleoprotein A1, pseudogene 50133277070432771717Rat
41328721LOC120096234uncharacterized LOC120096234133282316132876593Rat
9380288LOC103690256developmental pluripotency-associated protein 2 pseudogene133290068832901604Rat
9476423LOC103690298NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 pseudogene133290235732902654Rat
2318304Dnajc10-ps1DnaJ heat shock protein family (Hsp40) member C10, pseudogene 1133316724733168512Rat
11369155LOC108352640uncharacterized LOC108352640133338380333405325Rat
41383899LOC120096200uncharacterized LOC120096200133378636533790963Rat
41071536LOC120096373U7 small nuclear RNA133386668833866751Rat
11501382LOC108352641glyceraldehyde-3-phosphate dehydrogenase pseudogene133433454434335544Rat
1306427Dpp10dipeptidyl peptidase like 10133458442036269292Rat
41154132LOC120096396small nucleolar RNA SNORA17133466251334662643Rat
41054534LOC120096424U2 spliceosomal RNA133485878534858948Rat
41334534Rpl23a-ps18ribosomal protein L23a, pseudogene 18133557156735572037Rat
11432035LOC108352624uncharacterized LOC108352624133594992936144808Rat
41288161LOC120096236uncharacterized LOC120096236133641760236440116Rat
7713048LOC102554127uncharacterized LOC102554127133646666736468943Rat
71024Actr3actin related protein 3133680073936843837Rat
7577736LOC102554198uncharacterized LOC102554198133684413936862825Rat
1308125Slc35f5solute carrier family 35, member F5133699211837028549Rat
1306745Gpr39G protein-coupled receptor 39133711525837327312Rat
1549754Lypd1Ly6/Plaur domain containing 1133732645937368515Rat
1564507Nckap5NCK-associated protein 5133736994838283257Rat
1592076Psme2-ps1proteasome activator subunit 2, pseudogene 1133818937538190347Rat
40941817Ftl1-ps11ferritin light chain 1, pseudogene 11133849046838492427Rat
1563709tuba1c-ps1tubulin, alpha 1C, pseudogene 1133850749638508836Rat
41257974LOC120096238uncharacterized LOC120096238133857113338578302Rat
11417017LOC108352524cysteine and glycine-rich protein 2 pseudogene133858125138587400Rat
620100Mgat5alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase133867577638959697Rat
41024668LOC120096388small nucleolar RNA U6-53/MBII-28133885055138850659Rat
41170686LOC120096239uncharacterized LOC120096239133893059138934947Rat
1306212Tmem163transmembrane protein 163133896791339141664Rat
620868Acmsdaminocarboxymuconate semialdehyde decarboxylase133920041239245954Rat
1309205Ccnt2cyclin T2133925157339293172Rat
1566400Map3k19mitogen-activated protein kinase kinase kinase 19133930015039343502Rat
1306487Rab3gap1RAB3 GTPase activating protein catalytic subunit 1133935569839429154Rat
41267176LOC120096387small nucleolar RNA SNORA36 family133936360339363733Rat
1564952Zranb3zinc finger RANBP2-type containing 3133944065339595782Rat
7489024Mir3473microRNA 3473133949924639499312Rat
41023674Cmc1l1C-x(9)-C motif containing 1 like 1133951341939513580Rat
1307497R3hdm1R3H domain containing 1133959584839733876Rat
41108584LOC120096429U2 spliceosomal RNA133966495739665099Rat
2325574Mir128-1microRNA 128-1133969944939699530Rat
1307451Ubxn4UBX domain protein 4133974006439772493Rat
11453963LOC10835252760S ribosomal protein L37 pseudogene133974995339750218Rat
41380764Trnap-agg78transfer RNA proline (anticodon AGG) 78133976402339764103Rat
620823Lctlactase133978192939824456Rat
61967Mcm6minichromosome maintenance complex component 6133982674539851937Rat
41010028Trnas-aga41transfer RNA serine (anticodon AGA) 41133983277939832859Rat
621167Dars1aspartyl-tRNA synthetase 1133985793639913055Rat
2321949Rps26-ps11ribosomal protein S26, pseudogene 11133986369639864130Rat
1587045Ssbp1-ps2single stranded DNA binding protein 1, pseudogene 2133993478239936458Rat
41373884LOC120096378small nucleolar RNA SNORA70133998495139985085Rat
41049185LOC120096242uncharacterized LOC120096242134003193040047733Rat
620465Cxcr4C-X-C motif chemokine receptor 4134007797640081883Rat
7667252LOC102548838uncharacterized LOC102548838134016792440173369Rat
7640179LOC102548908uncharacterized LOC102548908134033504140350489Rat
41017587LOC120096459U6 spliceosomal RNA134038967540389783Rat
11371098Gapdh-ps26Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 26134046535740466360Rat
2321906Gabarapl2-ps1GABA type A receptor associated protein like 2, pseudogene 1134066230740662660Rat
1306938Thsd7bthrombospondin type 1 domain containing 7B134076856741667262Rat
40965712LOC120096439U4 spliceosomal RNA134086368040863870Rat
41197309LOC120096244uncharacterized LOC120096244134119071441202717Rat
41212925LOC120096445U6 spliceosomal RNA134130467841304784Rat
2321708Mrpl30-ps2mitochondrial ribosomal protein L30, pseudogene 2134172398441724457Rat
620651Cd55CD55 molecule (Cromer blood group)134185724241885966Rat
11382668LOC108352528glyceraldehyde-3-phosphate dehydrogenase pseudogene134196320941966846Rat
727846Zp3rzona pellucida 3 receptor134201999842064836Rat
2235C4bpacomplement component 4 binding protein, alpha134207571542111205Rat
2321508Lsm6l1LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated like 1134211401342116559Rat
2236C4bpbcomplement component 4 binding protein, beta134212079842131515Rat
3309Pfkfb26-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2134214747342174699Rat
1359726Yod1YOD1 deubiquitinase134217504742181661Rat
1565034C13h1orf116similar to human chromosome 1 open reading frame 116134218744242201432Rat
1584674FcamrFc alpha and mu receptor134227389142288002Rat
3328Pigrpolymeric immunoglobulin receptor134229890542326877Rat
1359282FcmrFc mu receptor134233736342351706Rat
621484Il24interleukin 24134235308942358487Rat
1583578Il20interleukin 20134238098142384625Rat
1583546Il19interleukin 19134239771542411637Rat
41199188Trnag-ucc11transfer RNA glycine (anticodon UCC) 11134240316742403238Rat
2886Il10interleukin 10134247262542477308Rat
631362Mapkapk2MAPK activated protein kinase 2134251376242560061Rat
1310924Dyrk3dual specificity tyrosine phosphorylation regulated kinase 3134259412042604898Rat
1561765Eif2deukaryotic translation initiation factor 2D134261590142637107Rat
621694Rassf5Ras association domain family member 5134263751342703024Rat
1308352Ikbkeinhibitor of nuclear factor kappa B kinase subunit epsilon134271215442738470Rat
1566016Srgap2SLIT-ROBO Rho GTPase activating protein 2134274595642967091Rat
41158336LOC120096246uncharacterized LOC120096246134275133642767711Rat
11369964LOC108352529NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 pseudogene134288365042891923Rat
1598023Fam72afamily with sequence similarity 72, member A134296770142979083Rat
2320539Rpl36a-ps14ribosomal protein L36A, pseudogene 14134303513043044764Rat
6502812Avpr1barginine vasopressin receptor 1B134304653143059046Rat
2446Ctsecathepsin E134309195443114509Rat
1562617Rab7bRab7b, member RAS oncogene family134312116843147581Rat
9467553LOC103691878uncharacterized LOC103691878134317629543196541Rat
1310441Slc26a9solute carrier family 26 member 9134317780643205450Rat
1564063Pm20d1peptidase M20 domain containing 1134323795443259999Rat
1311397Slc41a1solute carrier family 41 member 1134327079243291162Rat
620892Rab29RAB29, member RAS oncogene family134330775743313420Rat
7661875LOC102556005uncharacterized LOC102556005134334275643344946Rat
620993Nucks1nuclear casein kinase and cyclin-dependent kinase substrate 1134334509143374316Rat
1588113Ran-ps4RAN, member RAS oncogene family, pseudogene 4134338100743383927Rat
1309764Slc45a3solute carrier family 45, member 3134340729343427588Rat
1310504Elk4ETS transcription factor ELK4134345113043475035Rat
1566090Mfsd4amajor facilitator superfamily domain containing 4A134346948843510467Rat
1309523Cdk18cyclin-dependent kinase 18134355559743582210Rat
2322707Lemd1LEM domain containing 1134363170543697765Rat
2325610Mir135bmicroRNA 135b134363885743638953Rat
1305132Klhdc8akelch domain containing 8A134373570243744277Rat
1359167Nuak2NUAK family kinase 2134375345443770604Rat
41351842LOC120096185uncharacterized LOC120096185134375416743760164Rat
1311960Tmcc2transmembrane and coiled-coil domain family 2134379402943831716Rat
735051Dstykdual serine/threonine and tyrosine protein kinase134385726643905280Rat
1305532Rbbp5RB binding protein 5, histone lysine methyltransferase complex subunit134391225443939107Rat
1561544Tmem81transmembrane protein 81134393967743942108Rat
3821Cntn2contactin 2134394286843975973Rat
41226902LOC120096452U6 spliceosomal RNA134396455243964658Rat
620911Nfascneurofascin134399722344183863Rat
2322511Tmem126a-ps2transmembrane protein 126A, pseudogene 2134419981544200394Rat
41077524LOC120096186uncharacterized LOC120096186134420495044209708Rat
11377184LOC108352532uncharacterized LOC108352532134422058144222116Rat
40993431LOC120096406small nucleolar RNA SNORA17134425476144254882Rat
1305482Lrrn2leucine rich repeat neuronal 2134432194444382454Rat
1309306Mdm4MDM4 regulator of p53134443259644516165Rat
41401176Trnak-uuu7transfer RNA lysine (anticodon UUU) 7134448191644481988Rat
41278710Trnak-uuu8transfer RNA lysine (anticodon UUU) 8134448230744482379Rat
1306541Pik3c2bphosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta134449467344555663Rat
1307944Ppp1r15bprotein phosphatase 1, regulatory subunit 15B134457784044585737Rat
1564395Plekha6pleckstrin homology domain containing A6134461474044754951Rat
1566310Golt1agolgi transport 1A134476035644773123Rat
727850Kiss1KiSS-1 metastasis-suppressor134477510644780707Rat
3554Renrenin134479626044807491Rat
7501983LOC102550525uncharacterized LOC102550525134480077244802578Rat
1305304Etnk2ethanolamine kinase 2134481101244829052Rat
1309674Sox13SRY-box transcription factor 13134483109744875522Rat
9461626LOC103692077uncharacterized LOC103692077134492825644937589Rat
2321675Snrpesmall nuclear ribonucleoprotein polypeptide E134505098645057231Rat
1308290Zc3h11azinc finger CCCH-type containing 11A134507342245113901Rat
9238526Zbed6zinc finger, BED-type containing 6134510725345113524Rat
11453213LOC108352533uncharacterized LOC108352533134511636845130742Rat
41075572Ndufb10-ps1NADH:ubiquinone oxidoreductase subunit B10, pseudogene 1134512119745122944Rat
1563522Lax1lymphocyte transmembrane adaptor 1134513482545145381Rat
41337984LOC120096250uncharacterized LOC120096250134513631545140254Rat
621305Atp2b4ATPase plasma membrane Ca2+ transporting 4134515613745255292Rat
1304916Optcopticin134535395445368254Rat
620226Prelpproline and arginine rich end leucine rich repeat protein134536840745391480Rat
7514622LOC102557118uncharacterized LOC102557118134538044245384435Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10461D13Wox14205133124132831241527Ratregion
10462D13Mgh13139133124133131241464Ratregion
10809D13Mgh16140133053197730532123Ratregion
11084D13Mgh12125134215553442155659Ratregion
11232D13Arb7317134480209344802410Ratregion
33935D13Mit8206134529565245295858Ratregion
34076D13Mgh1149131769443617694591Ratregion
34140D13Mgh2128133181339931813531Ratregion
34351D13Mgh4150133741558437415726Ratregion
34371D13Mgh3142133453521834535351Ratregion
37408D13Rat103171133173245731732634Ratregion
37414D13Rat66194134245588642456081Ratregion
37420D13Rat70194133259358332593785Ratregion
35170D13Rat12136133185319231853326Ratregion
35208D13Rat2165131828723718287390Ratregion
35543D13Rat21150134235663642356786Ratregion
35557D13Rat18146133423763634237786Ratregion
36884D13Rat25166134504940445049579Ratregion
36888D13Rat6143132053128920531432Ratregion
36922D13Rat4132131192944911929569Ratregion
36974D13Rat16156133173919431739348Ratregion
36992D13Rat13118132824121428241322Ratregion
37022D13Rat149125133996684339967026Ratregion
37804D13Rat80245133801657138016830Ratregion
37924D13Rat59200132976772129767923Ratregion
37938D13Rat81210133098979730989997Ratregion
36492D13Rat15133133162377031623898Ratregion
36630D13Rat5162131842037818420540Ratregion
36695D13Rat38156133765865937658786Ratregion
36699D13Rat1290132060555520605871Ratregion
36747D13Rat20138133726209237262232Ratregion
36767D13Rat40164133847804838478212Ratregion
34767D13Rat35133131582850015828633Ratregion
34833D13Rat19169134196122441961389Ratregion
34876D13Rat17174133191192731912099Ratregion
34951D13Rat39161133255976832559935Ratregion
35130D13Rat22122134094979340949915Ratregion
35649D13Rat3162132162156721621744Ratregion
35925D13Rat41163134372077043720931Ratregion
39778D13Rat134196131688113216881328Ratregion
39804D13Rat111128133039535130395471Ratregion
38020D13Rat87159134363752843637697Ratregion
38126D13Rat100157133333475633334921Ratregion
38152D13Rat83173133168465831684825Ratregion
38240D13Rat91172134541775345417941Ratregion
40398D13Rat147258133913836339138623Ratregion
40618D13Rat144153131846776218467901Ratregion
40662D13Rat113134133233147532331607Ratregion
40688D13Rat124236134522835845228590Ratregion
40744D13Rat122135134069764940697787Ratregion
38450D13Rat52244134078268540782928Ratregion
38480D13Rat104141133095822030958365Ratregion
38530D13Rat94216133626080636261020Ratregion
38602D13Rat97226134308631543086541Ratregion
38840D13Rat105201134413959544139796Ratregion
38982D13Rat95116133183653031836616Ratregion
39032D13Rat60131132300177923001904Ratregion
39056D13Rat98217133149848431498698Ratregion
39196D13Rat68148131309381813093970Ratregion
39208D13Rat88233134118402241184251Ratregion
41974D13Arb3170133337342533373597Ratregion
41978D13Arb5213133790260837902821Ratregion
41978D13Arb5213133790260837902821Ratregion
41222D13Rat114145133735094937351078Ratregion
41304D13Rat121125133849536238495491Ratregion
41338D13Rat115138133477861934778759Ratregion
41346D13Rat123132134343790443438038Ratregion
41366D13Rat119205133849016538490376Ratregion
42984D13Rat173215133250758332507800Ratregion
42986D13Rat172121133444246834442592Ratregion
42987D13Rat146129133370630033706445Ratregion
42988D13Rat174235133869418038694475Ratregion
42989D13Rat199149133663126636631415Ratregion
42990D13Rat148149133534432535344477Ratregion
40776D13Rat117212133653047236530684Ratregion
40936D13Rat107249131225932012259575Ratregion
40948D13Rat120141134421114144211288Ratregion
41632D13Rat145143132831448328314620Ratregion
44104D12Got77199133309042233090621Ratregion
44552D9Wox21136133775293337752990Ratregion
43378D13Wox18310134007831040078623Ratregion
45024D13Got109127133463477934634906Ratregion
45025D13Got8111133615572336155834Ratregion
45026D13Got6180133738636237386542Ratregion
45028D13Got9249133790260637902855Ratregion
45028D13Got9249133790260637902855Ratregion
45029D13Got10145133787728237877427Ratregion
45030D13Got13234133836255238362788Ratregion
45031D13Got14163133862825438628419Ratregion
45033D13Got11238133890186238902100Ratregion
45034D13Got18180133894686238947042Ratregion
45035D13Got1219133613919136139409Ratregion
45036D13Got3290133643083936431129Ratregion
45037D13Got5252133647052336470772Ratregion
45038D13Got16245133996641539966660Ratregion
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45042D13Got21227134234252042342749Ratregion
45044D13Got29170134234252342342695Ratregion
45045D13Got19209133996249839962707Ratregion
45047D13Got25135134388554543885678Ratregion
45048D13Wox2147134516231245162453Ratregion
45052D13Got26186134527247045272654Ratregion
60548D6Got78245133403619734036442Ratregion
60549D6Got8165131296238012962545Ratregion
60500D6Got10290131525702115257303Ratregion
60726D1Mit25149131639167416391823Ratregion
67812D13Uwm4125133015448130154602Ratregion
67818D13Uwm6236133797058337970825Ratregion
67818D13Uwm6236133797058337970825Ratregion
60035D13Got23196134378125543781451Ratregion
60036D13Got24172134370909843709270Ratregion
60037D13Got28139134536284345363002Ratregion
66509D13Mco4254133080776730808001Ratregion
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67221D13Arb17124133365331433653438Ratregion
67221D13Arb17124133365331433653556Ratregion
67222D13Arb18160133125043131250591Ratregion
67806D13Uwm2212133290569932905907Ratregion
1630306D13Got215168131897659418976762Ratregion
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1631200D13Got265152131491750414917656Ratregion
1631215D13Got258161132201440722014568Ratregion
1631407D13Got26794133190280731902901Ratregion
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1581962D13Hmgc86325133540799035408317Ratregion
1581966D13Hmgc52248133228034732280593Ratregion
1582008D13Hmgc37217133073755030737765Ratregion
1582018D13Hmgc98183133950973339509916Ratregion
1582020D13Hmgc89207133636039436360601Ratregion
1582022D13Hmgc60124133795405037954174Ratregion
1582022D13Hmgc60124133795405037954174Ratregion
1627537D13Sunn1090243134521437145214612Ratregion
1627537D13Sunn1090243134521437145214612Ratregion
1627719D13Got247190131526151615261706Ratregion
1582062D13Hmgc78276133396879333969069Ratregion
1582084D13Hmgc77211134067354140673752Ratregion
1628694D13Got257157132550780725507964Ratregion
1628782D13Got224131133228046332280592Ratregion
1628857D13Got201166131897659418976760Ratregion
1628988D13Got251207133249914032499348Ratregion
1629171D13Wox24134303736343037529Ratregion
1629171D13Wox24134303736343037936Ratregion
1629565D13M1Mit189161133009442230094583Ratregion
1629574D13Got217113132147543221475545Ratregion
1629858D13Uwm8118132228403822284156Ratregion
1638571D13Got27099132147544521475544Ratregion
1638819D13Got220206133161199931612207Ratregion
1639079D13Got219123133064312830643246Ratregion
1639128D13Got210284131314678113147060Ratregion
1640868D13Got222136133163656531636701Ratregion
1641102D13Got273172133204591232046084Ratregion
1641395D13Got272229133002165730021886Ratregion
1642155D13Hmgc90200134462450544624768Ratregion
1642155D13Hmgc90200134462456844624768Ratregion
1642157D13Hmgc58165134384988043850045Ratregion
1642159D13Hmgc64196134376375243763948Ratregion
1642163D13Hmgc84254134463918244639436Ratregion
1642165D13Hmgc41223134383007543830298Ratregion
1632714D13Got228159133352429933524458Ratregion
1632825D13Got218123132018317620183299Ratregion
1633101D13Got236183133539109835391279Ratregion
1640473D13Got271147133320926933209416Ratregion
1635014D13Got200270133153391431534184Ratregion
1635185D13Got214116132175082621750935Ratregion
1635404D13Got245201132017835020178551Ratregion
1635948D13Got263268133240841232408680Ratregion
1637510D13Got260255133492690834927163Ratregion
1637860D13Got243125132616623726166362Ratregion
1638161D13Got225204133204922432049428Ratregion
1638308D13Got235210132032215620322366Ratregion
1638347D13Got227215133356002533560236Ratregion
1638379D13Got237176133249922732499398Ratregion
1633646D13Got246263131761235317612616Ratregion
1633806D13Got239175132220146222201637Ratregion
1634693D13Got223200133215922732159427Ratregion
2324933D13Hmgc40258133874496838745230Ratregion
2324933D13Hmgc40258133874496838745230Ratregion
2324935D13Hmgc72195133758589237586087Ratregion
2324937D13Hmgc93173133740646737406640Ratregion
7205960C1ql2897133147178831472685Ratregion
7205984C1ql21447133147123831472685Ratregion
7191227D13MGH3142133453521734535351Ratregion
5035779PMC16825P1703132285142522852128Ratregion
5035941PMC314463P1805133175536931756174Ratregion
7206562UniSTS:547065145134318521543185360Ratregion
7206598En1584133175582331756407Ratregion
5036410UniSTS:143850231133962079239620946Ratregion
5036859AU049435182133294561132945793Ratregion
5036921AU049632137131256475212564891Ratregion
5037037AU050004114133755080637550920Ratregion
5037215BE199656116133077217730772293Ratregion
5035544Ranbp10131671995416720426Ratregion
5031350PMC150726P1294132285168322851977Ratregion
7206248Il100134247289442474370Ratregion
5028779RH142296155132285201522852172Ratregion
5028805RH142395165133247272332472888Ratregion
5031664AU047559241131408482214085059Ratregion
5026378RH131976182133268085532681037Ratregion
5028931RH142867105134346173043461835Ratregion
5028939RH142898142131601798316018125Ratregion
5031708AU047414232131305219613052423Ratregion
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5031812AU047069200134197777341977968Ratregion
5034355SHGC-76196150134515803245158182Ratregion
5034634BF390479197134389675843896955Ratregion
5026732RH133326199132286045922860658Ratregion
5029305RH144293171134076924740769418Ratregion
5029377RH144564156134515647945156634Ratregion
5032052AU046910135133699109036991227Ratregion
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5032335AI853408118133732675837326876Ratregion
5035068STS-M6202185134388712343887208Ratregion
5027145D1S2831551134342409343424474Ratregion
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5032733RH135101209132308341623083625Ratregion
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5033157RH137803174131261941912619593Ratregion
5033179RH137876139132941030629410445Ratregion
502785713.MMHAP25FRE7.seq185133104650931046694Ratregion
5033201RH137955147133732807337328220Ratregion
5025298RH127783203133973363339733836Ratregion
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5028025MHAa21a5.seq203133068193830682141Ratregion
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5085836BE104220171134394293543943106Ratregion
5085880BQ198886158133929104439291202Ratregion
5503350Nlk-ps1648131593667915937327Ratregion
5503444Trp53329131206951112069840Ratregion
5503244UniSTS:237455213131672044516720662Ratregion
5504556PMC304100P4282132979355029793832Ratregion
5504614PMC316415P3600132285194422852544Ratregion
5504831ha2188868132175760721758475Ratregion
5505159Lrrn2892134437982544380717Ratregion
5505405Mapkapk21003134251405042515053Ratregion
5505532STS-Z411431080133874424738745331Ratregion
5505532STS-Z411431080133874424738745331Ratregion
5506793G45403176134531345545313631Ratregion
5506795G45485299133707800937078308Ratregion
5499711UniSTS:234199196133118481531185011Ratregion
5499717UniSTS:234205210133942853139428741Ratregion
5501211PMC155220P1276133053277730533053Ratregion
5500063UniSTS:236515198134393765243937850Ratregion
5499709UniSTS:234193235132971280329713038Ratregion
5500707RH71322171133819017038190341Ratregion
5500761REN8885250133297249232972742Ratregion
5500971PMC104155P1268132285142722851695Ratregion
5500991PMC114224P2335132199506921995404Ratregion
5503288UniSTS:237739237132744115727441394Ratregion
5503446UniSTS:461954348132285151422851862Ratregion
5501039PMC125347P1447132285148822851935Ratregion
5501610RH47250126133433013834330264Ratregion
Position Markers

Flank 1: (D13Rat4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21311,929,449 - 11,929,569 (+)MAPPER
Rnor_6.01314,441,582 - 14,441,701NCBI
Rnor_5.01319,680,631 - 19,680,750UniSTS
RGSC_v3.4131,265,159 - 1,265,434RGD
RGSC_v3.4131,265,208 - 1,265,327UniSTS
RGSC_v3.1131,265,159 - 1,265,434RGD
SHRSP x BN Map131.1799UniSTS
SHRSP x BN Map131.1799RGD
FHH x ACI Map133.68RGD
Cytogenetic Map13p13UniSTS
Peak: (D13Rat4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21311,929,449 - 11,929,569 (+)MAPPER
Rnor_6.01314,441,582 - 14,441,701NCBI
Rnor_5.01319,680,631 - 19,680,750UniSTS
RGSC_v3.4131,265,159 - 1,265,434RGD
RGSC_v3.4131,265,208 - 1,265,327UniSTS
RGSC_v3.1131,265,159 - 1,265,434RGD
SHRSP x BN Map131.1799UniSTS
SHRSP x BN Map131.1799RGD
FHH x ACI Map133.68RGD
Cytogenetic Map13p13UniSTS
Flank 2: (D13Rat91)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21345,417,753 - 45,417,941 (+)MAPPER
Rnor_6.01350,799,478 - 50,799,665NCBI
Rnor_5.01355,853,015 - 55,853,202UniSTS
RGSC_v3.41346,911,975 - 46,912,163RGD
RGSC_v3.41346,911,976 - 46,912,163UniSTS
RGSC_v3.11346,926,019 - 46,926,206RGD
Celera1345,746,900 - 45,747,075UniSTS
RH 3.4 Map13172.5UniSTS
RH 3.4 Map13172.5RGD
RH 2.0 Map13381.9RGD
SHRSP x BN Map1314.7498RGD
FHH x ACI Map1317.13RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
12879436Bp395Blood pressure QTL 395arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134463918245700190Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131176653532331607Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134372077062022792Rat
61453Pur1Proteinuria QTL 118.06urine total protein amount (VT:0000032)urine protein level (CMO:0000591)133453521837415726Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2303031Bp326Blood pressure QTL 326arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131176653523001904Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133039535141184251Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131176653532331607Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
2303032Bp328Blood pressure QTL 328arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134118402245417941Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134343790447841255Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
2292232Pur16Proteinuria QTL 1617.2urine total protein amount (VT:0000032)urine protein level (CMO:0000591)133615572341961389Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13599466834535351Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134522835847841255Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat


Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Cardf1  Cardiac cell morphology QTL 1  Cc1    Symbol updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_general additional information, including phenotype and mapping information, can be found at Genomic Map of Cardiovascular Phenotypes 727992
qtl_general damage assessment value assigned to aortic lesions based on lesion number and severity (SCOR124) 727992
qtl_general number of aortic lesions found in specimen analyzed (SCOR124) 70849
qtl_general additional information, including phenotype and mapping information, can be found at A genomics-systems biology map for cardiovascular function 70849