Clasp1 (cytoplasmic linker associated protein 1) - Rat Genome Database

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Gene: Clasp1 (cytoplasmic linker associated protein 1) Rattus norvegicus
Analyze
Symbol: Clasp1
Name: cytoplasmic linker associated protein 1
RGD ID: 1310970
Description: Predicted to enable dystroglycan binding activity; kinetochore binding activity; and microtubule plus-end binding activity. Predicted to be involved in several processes, including microtubule cytoskeleton organization; negative regulation of cytoskeleton organization; and positive regulation of extracellular matrix organization. Predicted to act upstream of or within cell division; establishment of spindle orientation; and negative regulation of microtubule depolymerization. Located in cytoplasm and kinetochore. Orthologous to human CLASP1 (cytoplasmic linker associated protein 1); INTERACTS WITH (+)-schisandrin B; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: MODEL
Also known as: CLIP-associating protein 1; LOC304740
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21329,493,554 - 29,715,151 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1329,493,596 - 29,715,146 (+)Ensembl
Rnor_6.01334,365,038 - 34,584,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1334,365,147 - 34,584,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01339,495,368 - 39,713,144 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41331,046,104 - 31,269,294 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11331,048,529 - 31,269,668 (+)NCBI
Celera1329,397,118 - 29,618,675 (+)NCBICelera
Cytogenetic Map13q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:11290329   PMID:12477932   PMID:12837247   PMID:15631994   PMID:16866869   PMID:16914514   PMID:17113391   PMID:17543864   PMID:19946888   PMID:21399614   PMID:21822276   PMID:23376485  
PMID:23783028   PMID:23940118   PMID:24859005   PMID:25344256  


Genomics

Comparative Map Data
Clasp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21329,493,554 - 29,715,151 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1329,493,596 - 29,715,146 (+)Ensembl
Rnor_6.01334,365,038 - 34,584,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1334,365,147 - 34,584,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01339,495,368 - 39,713,144 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41331,046,104 - 31,269,294 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11331,048,529 - 31,269,668 (+)NCBI
Celera1329,397,118 - 29,618,675 (+)NCBICelera
Cytogenetic Map13q11NCBI
CLASP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2121,337,776 - 121,649,476 (-)EnsemblGRCh38hg38GRCh38
GRCh382121,337,776 - 121,649,462 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372122,095,352 - 122,407,038 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362121,811,825 - 122,123,522 (-)NCBINCBI36hg18NCBI36
Build 342121,811,584 - 122,123,282NCBI
Celera2115,420,003 - 115,731,696 (-)NCBI
Cytogenetic Map2q14.2-q14.3NCBI
HuRef2114,418,654 - 114,729,805 (-)NCBIHuRef
CHM1_12122,098,869 - 122,410,596 (-)NCBICHM1_1
Clasp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,314,976 - 118,537,192 (+)NCBIGRCm39mm39
GRCm39 Ensembl1118,316,788 - 118,540,408 (+)Ensembl
GRCm381118,389,058 - 118,609,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,389,058 - 118,612,678 (+)EnsemblGRCm38mm10GRCm38
MGSCv371120,285,635 - 120,506,039 (+)NCBIGRCm37mm9NCBIm37
MGSCv361120,216,604 - 120,437,008 (+)NCBImm8
Celera1121,052,069 - 121,271,357 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
Clasp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554598,408,160 - 8,629,344 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554598,382,671 - 8,628,048 (+)NCBIChiLan1.0ChiLan1.0
CLASP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B121,837,413 - 122,103,078 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B121,840,484 - 122,102,793 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B8,265,626 - 8,574,282 (-)NCBIMhudiblu_PPA_v0panPan3
CLASP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11928,563,189 - 28,830,503 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1928,595,040 - 28,827,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1928,820,622 - 29,087,718 (+)NCBI
ROS_Cfam_1.01929,940,526 - 30,204,845 (+)NCBI
UMICH_Zoey_3.11928,626,435 - 28,893,769 (+)NCBI
UNSW_CanFamBas_1.01928,797,083 - 29,064,331 (+)NCBI
UU_Cfam_GSD_1.01929,977,506 - 30,244,752 (+)NCBI
Clasp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530392,282,508 - 92,550,374 (-)NCBI
SpeTri2.0NW_00493646949,067,357 - 49,335,212 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLASP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1529,782,604 - 30,042,734 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11529,782,613 - 30,042,727 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21534,740,928 - 34,976,541 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLASP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1108,639,245 - 8,946,935 (+)NCBI
ChlSab1.1 Ensembl108,639,196 - 8,946,968 (+)Ensembl
Vero_WHO_p1.0NW_02366606113,751,761 - 14,062,819 (-)NCBI
Clasp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473223,553,876 - 23,814,565 (+)NCBI

Position Markers
D13Rat14  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.41331,080,414 - 31,080,551RGDRGSC3.4
RGSC_v3.41331,080,415 - 31,080,551UniSTSRGSC3.4
RGSC_v3.11331,083,238 - 31,083,375RGD
Celera1329,431,477 - 29,431,613UniSTS
RH 2.0 Map1362.1RGD
SHRSP x BN Map133.44RGD
Cytogenetic Map13q11UniSTS
D13Rat110  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.41331,156,422 - 31,156,558RGDRGSC3.4
RGSC_v3.41331,156,423 - 31,156,558UniSTSRGSC3.4
RGSC_v3.11331,159,014 - 31,159,502RGD
Celera1329,505,949 - 29,506,084UniSTS
RH 2.0 Map1342.3RGD
SHRSP x BN Map133.4599RGD
Cytogenetic Map13q11UniSTS
AU048339  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21329,705,303 - 29,705,472 (+)MAPPERmRatBN7.2
Rnor_6.01334,574,810 - 34,574,978NCBIRnor6.0
Rnor_5.01339,703,303 - 39,703,471UniSTSRnor5.0
RGSC_v3.41331,259,451 - 31,259,619UniSTSRGSC3.4
Celera1329,608,809 - 29,608,977UniSTS
Cytogenetic Map13q11UniSTS
UniSTS:234193  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21329,712,803 - 29,713,038 (+)MAPPERmRatBN7.2
Rnor_6.01334,582,309 - 34,582,543NCBIRnor6.0
Rnor_6.01334,189,087 - 34,189,321NCBIRnor6.0
Rnor_5.01339,322,156 - 39,322,390UniSTSRnor5.0
Rnor_5.01339,710,802 - 39,711,036UniSTSRnor5.0
RGSC_v3.41331,266,950 - 31,267,184UniSTSRGSC3.4
Celera1329,616,352 - 29,616,586UniSTS
Cytogenetic Map13q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13599466834535351Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131176653532331607Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131176653532331607Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3114
Count of miRNA genes:342
Interacting mature miRNAs:469
Transcripts:ENSRNOT00000061513, ENSRNOT00000061515, ENSRNOT00000061516
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 42 34 18 19 18 8 11 74 28 41 11 8
Low 3 1 23 23 23 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001053715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC087721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000061513   ⟹   ENSRNOP00000058231
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1329,529,668 - 29,715,146 (+)Ensembl
Rnor_6.0 Ensembl1334,400,170 - 34,582,203 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000061515   ⟹   ENSRNOP00000058233
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1329,529,668 - 29,715,146 (+)Ensembl
Rnor_6.0 Ensembl1334,400,170 - 34,582,203 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000061516   ⟹   ENSRNOP00000058234
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1329,529,668 - 29,715,146 (+)Ensembl
Rnor_6.0 Ensembl1334,400,170 - 34,582,203 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084506   ⟹   ENSRNOP00000068667
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1329,493,596 - 29,709,315 (+)Ensembl
Rnor_6.0 Ensembl1334,400,170 - 34,582,203 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086641   ⟹   ENSRNOP00000069110
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1329,493,596 - 29,709,315 (+)Ensembl
Rnor_6.0 Ensembl1334,400,170 - 34,582,203 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092795
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1334,438,224 - 34,447,995 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092936   ⟹   ENSRNOP00000075994
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1334,519,256 - 34,542,149 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092998   ⟹   ENSRNOP00000076061
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1334,483,876 - 34,489,157 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093066   ⟹   ENSRNOP00000075946
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1329,529,668 - 29,715,146 (+)Ensembl
Rnor_6.0 Ensembl1334,365,147 - 34,479,862 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093127   ⟹   ENSRNOP00000076002
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1329,589,555 - 29,715,146 (+)Ensembl
Rnor_6.0 Ensembl1334,498,749 - 34,584,651 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099252   ⟹   ENSRNOP00000091698
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1329,529,668 - 29,715,146 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106487   ⟹   ENSRNOP00000078541
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1329,529,668 - 29,715,146 (+)Ensembl
RefSeq Acc Id: XM_039091226   ⟹   XP_038947154
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091227   ⟹   XP_038947155
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091228   ⟹   XP_038947156
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091229   ⟹   XP_038947157
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091230   ⟹   XP_038947158
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091232   ⟹   XP_038947160
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091233   ⟹   XP_038947161
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091234   ⟹   XP_038947162
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091235   ⟹   XP_038947163
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091236   ⟹   XP_038947164
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091237   ⟹   XP_038947165
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091238   ⟹   XP_038947166
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091239   ⟹   XP_038947167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091240   ⟹   XP_038947168
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091241   ⟹   XP_038947169
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091242   ⟹   XP_038947170
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091243   ⟹   XP_038947171
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091244   ⟹   XP_038947172
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091245   ⟹   XP_038947173
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091246   ⟹   XP_038947174
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091247   ⟹   XP_038947175
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091248   ⟹   XP_038947176
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091249   ⟹   XP_038947177
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091250   ⟹   XP_038947178
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091251   ⟹   XP_038947179
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091252   ⟹   XP_038947180
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091253   ⟹   XP_038947181
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091254   ⟹   XP_038947182
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091255   ⟹   XP_038947183
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091256   ⟹   XP_038947184
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091257   ⟹   XP_038947185
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091258   ⟹   XP_038947186
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091259   ⟹   XP_038947187
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091260   ⟹   XP_038947188
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091261   ⟹   XP_038947189
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091262   ⟹   XP_038947190
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091263   ⟹   XP_038947191
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091264   ⟹   XP_038947192
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091265   ⟹   XP_038947193
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091266   ⟹   XP_038947194
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091267   ⟹   XP_038947195
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091268   ⟹   XP_038947196
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091269   ⟹   XP_038947197
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091270   ⟹   XP_038947198
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091271   ⟹   XP_038947199
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091273   ⟹   XP_038947201
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091274   ⟹   XP_038947202
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091275   ⟹   XP_038947203
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091276   ⟹   XP_038947204
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
RefSeq Acc Id: XM_039091277   ⟹   XP_038947205
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038947154 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947155 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947156 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947157 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947158 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947160 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947161 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947162 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947163 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947164 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947165 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947166 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947167 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947168 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947169 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947170 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947171 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947172 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947173 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947174 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947175 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947176 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947177 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947178 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947179 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947180 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947181 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947182 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947183 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947184 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947185 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947186 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947187 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947188 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947189 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947190 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947191 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947193 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947194 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947195 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947196 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947197 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947198 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947199 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947201 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947202 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947203 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947204 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947205 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH87721 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: ENSRNOP00000068667   ⟸   ENSRNOT00000084506
RefSeq Acc Id: ENSRNOP00000058233   ⟸   ENSRNOT00000061515
RefSeq Acc Id: ENSRNOP00000058231   ⟸   ENSRNOT00000061513
RefSeq Acc Id: ENSRNOP00000058234   ⟸   ENSRNOT00000061516
RefSeq Acc Id: ENSRNOP00000076061   ⟸   ENSRNOT00000092998
RefSeq Acc Id: ENSRNOP00000075994   ⟸   ENSRNOT00000092936
RefSeq Acc Id: ENSRNOP00000076002   ⟸   ENSRNOT00000093127
RefSeq Acc Id: ENSRNOP00000075946   ⟸   ENSRNOT00000093066
RefSeq Acc Id: ENSRNOP00000069110   ⟸   ENSRNOT00000086641
RefSeq Acc Id: XP_038947154   ⟸   XM_039091226
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038947170   ⟸   XM_039091242
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038947168   ⟸   XM_039091240
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038947176   ⟸   XM_039091248
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038947162   ⟸   XM_039091234
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038947179   ⟸   XM_039091251
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038947163   ⟸   XM_039091235
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038947180   ⟸   XM_039091252
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038947155   ⟸   XM_039091227
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038947166   ⟸   XM_039091238
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038947182   ⟸   XM_039091254
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038947167   ⟸   XM_039091239
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038947184   ⟸   XM_039091256
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038947161   ⟸   XM_039091233
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038947165   ⟸   XM_039091237
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038947169   ⟸   XM_039091241
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038947171   ⟸   XM_039091243
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038947173   ⟸   XM_039091245
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038947157   ⟸   XM_039091229
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038947205   ⟸   XM_039091277
- Peptide Label: isoform X50
RefSeq Acc Id: XP_038947204   ⟸   XM_039091276
- Peptide Label: isoform X49
RefSeq Acc Id: XP_038947174   ⟸   XM_039091246
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038947197   ⟸   XM_039091269
- Peptide Label: isoform X43
RefSeq Acc Id: XP_038947199   ⟸   XM_039091271
- Peptide Label: isoform X45
RefSeq Acc Id: XP_038947156   ⟸   XM_039091228
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947172   ⟸   XM_039091244
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038947183   ⟸   XM_039091255
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038947185   ⟸   XM_039091257
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038947177   ⟸   XM_039091249
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038947188   ⟸   XM_039091260
- Peptide Label: isoform X34
RefSeq Acc Id: XP_038947187   ⟸   XM_039091259
- Peptide Label: isoform X33
RefSeq Acc Id: XP_038947196   ⟸   XM_039091268
- Peptide Label: isoform X42
RefSeq Acc Id: XP_038947201   ⟸   XM_039091273
- Peptide Label: isoform X46
RefSeq Acc Id: XP_038947160   ⟸   XM_039091232
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038947158   ⟸   XM_039091230
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038947175   ⟸   XM_039091247
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038947186   ⟸   XM_039091258
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038947178   ⟸   XM_039091250
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038947190   ⟸   XM_039091262
- Peptide Label: isoform X36
RefSeq Acc Id: XP_038947191   ⟸   XM_039091263
- Peptide Label: isoform X37
RefSeq Acc Id: XP_038947181   ⟸   XM_039091253
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038947193   ⟸   XM_039091265
- Peptide Label: isoform X39
RefSeq Acc Id: XP_038947195   ⟸   XM_039091267
- Peptide Label: isoform X41
RefSeq Acc Id: XP_038947189   ⟸   XM_039091261
- Peptide Label: isoform X35
RefSeq Acc Id: XP_038947198   ⟸   XM_039091270
- Peptide Label: isoform X44
RefSeq Acc Id: XP_038947192   ⟸   XM_039091264
- Peptide Label: isoform X38
RefSeq Acc Id: XP_038947164   ⟸   XM_039091236
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038947194   ⟸   XM_039091266
- Peptide Label: isoform X40
RefSeq Acc Id: XP_038947202   ⟸   XM_039091274
- Peptide Label: isoform X47
RefSeq Acc Id: XP_038947203   ⟸   XM_039091275
- Peptide Label: isoform X48
RefSeq Acc Id: ENSRNOP00000078541   ⟸   ENSRNOT00000106487
RefSeq Acc Id: ENSRNOP00000091698   ⟸   ENSRNOT00000099252
Protein Domains
CLASP_N   TOG

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698776
Promoter ID:EPDNEW_R9284
Type:multiple initiation site
Name:Clasp1_1
Description:cytoplasmic linker associated protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01334,365,123 - 34,365,183EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310970 AgrOrtholog
Ensembl Genes ENSRNOG00000002376 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000058231 UniProtKB/TrEMBL
  ENSRNOP00000058233 UniProtKB/TrEMBL
  ENSRNOP00000058234 UniProtKB/TrEMBL
  ENSRNOP00000068667 UniProtKB/TrEMBL
  ENSRNOP00000069110 UniProtKB/TrEMBL
  ENSRNOP00000075946 UniProtKB/TrEMBL
  ENSRNOP00000075994 UniProtKB/TrEMBL
  ENSRNOP00000076002 UniProtKB/TrEMBL
  ENSRNOP00000076061 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061513 UniProtKB/TrEMBL
  ENSRNOT00000061515 UniProtKB/TrEMBL
  ENSRNOT00000061516 UniProtKB/TrEMBL
  ENSRNOT00000084506 UniProtKB/TrEMBL
  ENSRNOT00000086641 UniProtKB/TrEMBL
  ENSRNOT00000092936 UniProtKB/TrEMBL
  ENSRNOT00000092998 UniProtKB/TrEMBL
  ENSRNOT00000093066 UniProtKB/TrEMBL
  ENSRNOT00000093127 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7321221 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  CLASP_metazoan UniProtKB/TrEMBL
  CLASP_N_dom UniProtKB/TrEMBL
  HEAT_type_2 UniProtKB/TrEMBL
  TOG UniProtKB/TrEMBL
MGC_CLONE MGC:105786 IMAGE-MGC_LOAD
NCBI Gene 304740 ENTREZGENE
PANTHER PTHR21567:SF28 UniProtKB/TrEMBL
Pfam CLASP_N UniProtKB/TrEMBL
PhenoGen Clasp1 PhenoGen
PROSITE HEAT_REPEAT UniProtKB/TrEMBL
SMART TOG UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2JTD7_RAT UniProtKB/TrEMBL
  A0A0G2JUI5_RAT UniProtKB/TrEMBL
  A0A1B0GWM1_RAT UniProtKB/TrEMBL
  A0A1B0GWR6_RAT UniProtKB/TrEMBL
  A0A1B0GWS3_RAT UniProtKB/TrEMBL
  A0A1B0GWX9_RAT UniProtKB/TrEMBL
  F1LNQ9_RAT UniProtKB/TrEMBL
  F1LNR0_RAT UniProtKB/TrEMBL
  F1LNR1_RAT UniProtKB/TrEMBL
  Q5M928_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Clasp1  cytoplasmic linker associated protein 1  Clasp1_predicted  cytoplasmic linker associated protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Clasp1_predicted  cytoplasmic linker associated protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED