Aia22 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Aia22 (Adjuvant induced arthritis QTL 22) Rattus norvegicus

Symbol: Aia22
Name: Adjuvant induced arthritis QTL 22
RGD ID: 2317027
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: right rear ankle joint diameter   (CMO:0002150)    
LOD Score: 2.29
P Value: Not Available
Variance: 6.1
Inheritance Type: dominant
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2131 - 34,266,636RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0131 - 36,779,181RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0131 - 42,018,230RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4131 - 23,584,369RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: F344/NCrl LEW/Crl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/NCrl  (IEA)
LEW/Crl  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic dissection of granulomatous enterocolitis and arthritis in the intramural peptidoglycan-polysaccharide-treated rat model of IBD. Bleich A, etal., Inflamm Bowel Dis. 2009 Jun 12;15(12):1794-1802.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41195021Pkm-ps3pyruvate kinase M1/2, pseudogene 31396731108323Rat
11478897LOC10835263060S ribosomal protein L37 pseudogene13112878113170Rat
1307724Dseldermatan sulfate epimerase-like13186413192592Rat
41327855LOC120096408small nucleolar RNA SNORA1713383102383229Rat
9200689Rps3a-ps5ribosomal protein S3a, pseudogene 513428963429654Rat
41197062LOC120096455U6 spliceosomal RNA13439205439310Rat
1587015Lasp1-ps1LIM and SH3 protein 1, pseudogene 113452779453504Rat
41051437LOC120096416small nucleolar RNA SNORA171310563341056453Rat
2323123Prps1-ps2phosphoribosyl pyrophosphate synthetase 1, pseudogene 21314381901443628Rat
41180864LOC120096431U2 spliceosomal RNA1318058081805975Rat
11438657LOC108352631glyceraldehyde-3-phosphate dehydrogenase pseudogene1319654841966499Rat
1583815Vdac1-ps12voltage-dependent anion channel 1, pseudogene 121320222512023293Rat
2322898G3bp1-ps4G3BP stress granule assembly factor 1, pseudogene 41320265992027995Rat
41397076LOC120096390small nucleolar RNA SNORA441320876882087811Rat
6498838Gak-ps1cyclin G associated kinase, pseudogene 11321166202121609Rat
2322939Chac2-ps3ChaC glutathione specific gamma-glutamylcyclotransferase 2, pseudogene 31321332082146557Rat
6498553LOC100910413probable ATP-dependent RNA helicase DDX6-like1328526062855060Rat
1583813Eif3d-ps1eukaryotic translation initiation factor 3, subunit D, pseudogene 11328886242890190Rat
1565762Hmgb1l4high mobility group box 1 like 41329583972959452Rat
7588234Envl-ps7MLV-related proviral Env polyprotein-like, pseudogene 71330146673018166Rat
1566343Cntnap5ccontactin associated protein-like 5C1335136154546285Rat
1591709Hsp90aa1-ps16heat shock protein 90 alpha family class A member 1, pseudogene 161335446563547416Rat
41176506LOC120096404small nucleolar RNA SNORA171336982523698384Rat
41092323LOC120096409small nucleolar RNA SNORA171341303584130486Rat
6496910LOC10091071460S ribosomal protein L36a-like1343000104300535Rat
2322665Sfpq-ps1splicing factor proline and glutamine rich, pseudogene 11351607585190666Rat
1584664Tlnrd1-ps1talin rod domain containing 1, pseudogene 11352578855440853Rat
2322306Matr3-ps3matrin 3, pseudogene 31359342355935893Rat
7603068LOC102555474uncharacterized LOC1025554741365480346553218Rat
7601016Hsp90aa1-ps11heat shock protein 90 alpha family class A member 1, pseudogene 111365573266558091Rat
2322265Rlf-ps1RLF zinc finger, pseudogene 11367594806765982Rat
1562598Rpl4-ps8ribosomal protein L4, pseudogene 81368484356849328Rat
1583494Frmd3-ps1FERM domain containing 3, pseudogene 11374056537407433Rat
41289942LOC120096428U2 spliceosomal RNA1374520587452137Rat
1559812Cntnap5acontactin associated protein-like 5A1389609519962906Rat
11462184LOC108352511uncharacterized LOC1083525111391719559365032Rat
41125122LOC120096456U6 spliceosomal RNA1395358489535957Rat
41185192LOC120096443U6 spliceosomal RNA1396563169656422Rat
2325079Selenok-ps2selenoprotein K, pseudogene 21396814399683245Rat
7517597LOC102551071myosin light polypeptide 6-like1399032869903991Rat
41275147Mapk1ip1l2mitogen-activated protein kinase 1 interacting protein 1 like 2131000361610007430Rat
7716636Zfp945l2zinc finger protein 945 like 2131077318910776173Rat
6485077Zfp616l1zinc finger protein 616 like 1131085932910884072Rat
6494480LOC100911239uncharacterized LOC100911239131101098011026384Rat
41335505LOC120096224uncharacterized LOC120096224131102950611037640Rat
41139344LOC120096225uncharacterized LOC120096225131105582811057316Rat
7681392Zfp715-ps2zinc finger protein 715, pseudogene 2131145209311468047Rat
1587089Ubcl1ubiquitin C like 1131180299811803461Rat
1592077Cntnap5bl1contactin associated protein family member 5B like 1131185376112864307Rat
41289916LOC120096412small nucleolar RNA SNORA17131224084912240975Rat
7529420Eif4a1-ps1eukaryotic translation initiation factor 4A1, pseudogene 1131251196712513501Rat
41325179Trnap-ggg8transfer RNA proline (anticodon GGG) 8131316820113168282Rat
1585944Phb1-ps16prohibitin 1, pseudogene 16131369533213696148Rat
1593260Hspd1-ps8heat shock protein family D (Hsp60) member 1, pseudogene 8131404430914046528Rat
1583413Josd1-ps1Josephin domain containing 1, pseudogene 1131469931614699912Rat
9117769LOC103691598methionine adenosyltransferase 2 subunit beta pseudogene131483603514836975Rat
2321136Smyd3-ps1SET and MYND domain containing 3, pseudogene 1131504460815045633Rat
9091700LOC103691604uncharacterized LOC103691604131531458815381026Rat
1584807Rps4x-ps11ribosomal protein S4, X-linked, pseudogene 11131534048915341938Rat
40995925LOC120096444U6 spliceosomal RNA131586392815864034Rat
2318305Ccdc28a-ps1coiled-coil domain containing 28A, pseudogene 1131593217815932833Rat
1561440Nlkl1Nlk like 1131593455015939076Rat
1594544Kif13a-ps1kinesin family member 13A, pseudogene 1131601713416021538Rat
41182474LOC120096227uncharacterized LOC120096227131690459316910352Rat
11457739LOC108352514uncharacterized LOC108352514131690756616931271Rat
6490239Btf3-ps3basic transcription factor 3, pseudogene 3131723827017239523Rat
41026629Dnajc14-ps1DnaJ heat shock protein family (Hsp40) member C14, pseudogene 1131727147617273698Rat
1598145Gemin8-ps4gem (nuclear organelle) associated protein 8, pseudogene 4131769333317694256Rat
1565194Cntnap5bcontactin associated protein family member 5B131786336718766983Rat
41165395LOC120096398small nucleolar RNA SNORA17131842296618423097Rat
9400371Ppp1r14bl1protein phosphatase 1, regulatory (inhibitor) subunit 14B like 1131952200919522605Rat
1596843Hmgb3-ps2high mobility group box 3, pseudogene 2132060090720601478Rat
1305438Cdh20cadherin 20132073764021069746Rat
7498875LOC102547165uncharacterized LOC102547165132105507721068613Rat
1305251Rnf152ring finger protein 152132132403921403405Rat
6487798Fau-ps3FAU ubiquitin like and ribosomal protein S30 fusion, pseudogene 3132162910221629445Rat
1311346Pignphosphatidylinositol glycan anchor biosynthesis, class N132165909221812932Rat
1307235RelchRAB11 binding and LisH domain, coiled-coil and HEAT repeat containing132180697221902807Rat
41316489Trnah-aug1transfer RNA histidin (anticodon AUG) 1132190993821910012Rat
1563614Tnfrsf11aTNF receptor superfamily member 11A132192837021986719Rat
41181148Gapdh-ps44Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 44132199505421996060Rat
11469342LOC108352516uncharacterized LOC108352516132201820222027872Rat
7701520LOC102550337uncharacterized LOC102550337132202801022042859Rat
7641700LOC102550524uncharacterized LOC102550524132206441822111976Rat
1310626Zcchc2zinc finger CCHC-type containing 2132211867722193626Rat
621308Phlpp1PH domain and leucine rich repeat protein phosphatase 1132230853222530978Rat
11394992LOC108352518uncharacterized LOC108352518132258998722598210Rat
2199Bcl2BCL2, apoptosis regulator132268978322853920Rat
41131179LOC120096229uncharacterized LOC120096229132273222722739137Rat
1307775Kdsr3-ketodihydrosphingosine reductase132286211722894118Rat
1305969Vps4bvacuolar protein sorting 4 homolog B132290710522932200Rat
69342Serpinb5serpin family B member 5132298555723005756Rat
1566382Serpinb12serpin family B member 12132305238423083691Rat
1304661Serpinb13serpin family B member 13132311858223150352Rat
1562868Serpinb3aserpin family B member 3A132324130323246328Rat
41010017LOC120096217protein PRRC2B-like132325107023256472Rat
1549766Serpinb3serpin family B member 3132327412023280660Rat
1306497Serpinb11serpin family B member 11132330477523344604Rat
7576045LOC102553197uncharacterized LOC102553197132332281923336975Rat
1591786Tpt1-ps3tumor protein, translationally-controlled 1 pseudogene 3132336539723369042Rat
71063Serpinb7serpin family B member 7132336983023442205Rat
41128384LOC120096417small nucleolar RNA SNORA17132341396723414096Rat
621823Serpinb2serpin family B member 2132353731223551823Rat
628853Serpinb10serpin family B member 10132355334823571182Rat
1309833Serpinb8serpin family B member 8132362693623650277Rat
1583819Gapdh-ps7Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 7132382125223822604Rat
41010849LOC120096395small nucleolar RNA SNORA17132396296623963097Rat
11474113Ervk-21l1endogenous retrovirus group K member 21 Env polyprotein-like 1132561754425619382Rat
11477275LOC108353429endogenous retrovirus group K member 10 Gag polyprotein-like132562263025625688Rat
1560523Mat2al1methionine adenosyltransferase 2A like 1132608899726090862Rat
1565627Hmgb1-ps17high-mobility group box 1, pseudogene 17132613486826138359Rat
41152662LOC120096381small nucleolar RNA SNORD50132615472426154795Rat
1598193Mpeg1-ps1macrophage expressed 1, pseudogene 1132622188026223810Rat
41333015LOC120096411small nucleolar RNA SNORA17132623216626232296Rat
1594585Arrb1-ps1arrestin, beta 1, pseudogene 1132651087826512979Rat
9209511LOC103691611cyclin-dependent kinases regulatory subunit 1 pseudogene132656388326564406Rat
1306856Cdh7cadherin 7132667205826821571Rat
41244932LOC120096442U6 spliceosomal RNA132696330326963409Rat
11414926LOC10835261540S ribosomal protein S28 pseudogene132697477926974991Rat
2324722Tmem64-ps1transmembrane protein 64, pseudogene 1132721750627283978Rat
1583818Hnrnpa1-ps1heterogeneous nuclear ribonucleoprotein A1, pseudogene 1132734503327346526Rat
1562794Esco1-ps1establishment of sister chromatid cohesion N-acetyltransferase 1, pseudogene 1132744092127444431Rat
2323366Upf3b-ps1UPF3B, regulator of nonsense mediated mRNA decay, pseudogene 1132757265027597288Rat
41082629Trnaa-agc67transfer RNA alanine (anticodon AGC) 67132760763127607705Rat
1307169Cdh19cadherin 19132793591528047490Rat
41228947LOC120096433U2 spliceosomal RNA132796494127965064Rat
7629682Eef2-ps1eukaryotic translation elongation factor 2, pseudogene 1132800777028011026Rat
1583817Dpp3-ps2dipeptidyl peptidase 3, pseudogene 1132815238128153944Rat
11501111LOC108352638dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4-like132835770028357816Rat
1561585Slc35a4-ps1solute carrier family 35, member A4, pseudogene 1132863615128637134Rat
41083747LOC120096235SLC35A4 upstream open reading frame protein-like132863752528637836Rat
6496985Eef2k-ps1eukaryotic elongation factor-2 kinase, pseudogene 1132887600128880880Rat
1559752Tcf4-ps1transcription factor 4, pseudogene 1132888301128884382Rat
1596977Mcts1-ps2MCTS1, re-initiation and release factor, pseudogene 2132899512328995667Rat
621107Tsntranslin132936640529377251Rat
708462Nifknucleolar protein interacting with the FHA domain of MKI67132939330329403387Rat
7688772LOC10254702160S ribosomal protein L7-like132948435529485077Rat
1310970Clasp1cytoplasmic linker associated protein 1132949355429715151Rat
7517596Hsp90aa1-ps5heat shock protein 90 alpha family class A member 1, pseudogene 5132949450229497346Rat
41247988LOC120096397small nucleolar RNA SNORA17132956172329561851Rat
41059766LOC120096423U4atac minor spliceosomal RNA132956736129567485Rat
1305456Tfcp2l1transcription factor CP2-like 1132973381329793870Rat
41122660LOC120096197uncharacterized LOC120096197132984957129856937Rat
40953093LOC120096434U2 spliceosomal RNA132988468829884743Rat
41145667Rps10-ps15ribosomal protein S10, pseudogene 15132991337829914001Rat
1585916Ube2s-ps1ubiquitin-conjugating enzyme E2S, pseudogene 1132992363129942719Rat
1309270Gli2GLI family zinc finger 2132994688230163589Rat
2913Inhbbinhibin subunit beta B133053086030536566Rat
619852RalbRAS like proto-oncogene B133058803630624199Rat
1309602Tmem185btransmembrane protein 185B133064753330650864Rat
41208883LOC120096454U6 spliceosomal RNA133065190530652011Rat
1311366Epb41l5erythrocyte membrane protein band 4.1 like 5133067079230770213Rat
620712Ptpn4protein tyrosine phosphatase, non-receptor type 4133077201230952340Rat
41255751Ankrd49-ps2ankyrin repeat domain 49, pseudogene 2133094031230946968Rat
41082826LOC120096199uncharacterized LOC120096199133098178530983255Rat
1310320Tmem177transmembrane protein 177133102389331027368Rat
1584968Cfap221cilia and flagella associated protein 221133104655031118141Rat
621342Sctrsecretin receptor133112778131190162Rat
628689Tmem37transmembrane protein 37133118432231191477Rat
2490Dbidiazepam binding inhibitor133124146631249853Rat
1594584C13h2orf76similar to chromosome 2 open reading frame 76133124973331335367Rat
708552Steap3STEAP3 metalloreductase133135195431397344Rat
1594583C1ql2complement C1q like 2133147115031472685Rat
1589662Marcomacrophage receptor with collagenous structure133161627831648521Rat
1595088En1engrailed homeobox 1133175089231756477Rat
1565260Tpt1-ps1tumor protein, translationally-controlled 1, pseudogene 1133212170732122385Rat
41303516LOC120096233uncharacterized LOC120096233133225144632288690Rat
631417Insig2insulin induced gene 2133247239032500139Rat
1560504Ccdc93coiled-coil domain containing 93133260761832675993Rat
62388Htr5b5-hydroxytryptamine (serotonin) receptor 5B133268691132699835Rat
1549712Ddx18DEAD-box helicase 18133272969732743161Rat
6490323Hnrnpa1-ps50heterogeneous nuclear ribonucleoprotein A1, pseudogene 50133277070432771717Rat
41328721LOC120096234uncharacterized LOC120096234133282316132876593Rat
9380288LOC103690256developmental pluripotency-associated protein 2 pseudogene133290068832901604Rat
9476423LOC103690298NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 pseudogene133290235732902654Rat
2318304Dnajc10-ps1DnaJ heat shock protein family (Hsp40) member C10, pseudogene 1133316724733168512Rat
11369155LOC108352640uncharacterized LOC108352640133338380333405325Rat
41383899LOC120096200uncharacterized LOC120096200133378636533790963Rat
41071536LOC120096373U7 small nuclear RNA133386668833866751Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10461D13Wox14205133124132831241527Ratregion
10462D13Mgh13139133124133131241464Ratregion
10809D13Mgh16140133053197730532123Ratregion
33923D13Mit11241359946685994833Ratregion
34076D13Mgh1149131769443617694591Ratregion
34140D13Mgh2128133181339931813531Ratregion
36251D13Rat81761364245796424736Ratregion
36289D13Rat361761387736748773824Ratregion
37396D13Rat932271317011771701426Ratregion
37408D13Rat103171133173245731732634Ratregion
37420D13Rat70194133259358332593785Ratregion
35170D13Rat12136133185319231853326Ratregion
35208D13Rat2165131828723718287390Ratregion
35557D13Rat18146133423763634237786Ratregion
36888D13Rat6143132053128920531432Ratregion
36922D13Rat4132131192944911929569Ratregion
36974D13Rat16156133173919431739348Ratregion
36992D13Rat13118132824121428241322Ratregion
37180D13Rat642311388971178897350Ratregion
37862D13Rat6516513953970954137Ratregion
37924D13Rat59200132976772129767923Ratregion
37938D13Rat81210133098979730989997Ratregion
37968D13Rat552341379221847922412Ratregion
36492D13Rat15133133162377031623898Ratregion
36612D13Rat91421336110073611148Ratregion
36630D13Rat5162131842037818420540Ratregion
36675D13Rat111701324245292424710Ratregion
36699D13Rat1290132060555520605871Ratregion
34767D13Rat35133131582850015828633Ratregion
34876D13Rat17174133191192731912099Ratregion
34951D13Rat39161133255976832559935Ratregion
35649D13Rat3162132162156721621744Ratregion
35701D13Rat101481365556496555791Ratregion
35975D13Rat7174131176653511766737Ratregion
39778D13Rat134196131688113216881328Ratregion
39804D13Rat111128133039535130395471Ratregion
38126D13Rat100157133333475633334921Ratregion
38152D13Rat83173133168465831684825Ratregion
40618D13Rat144153131846776218467901Ratregion
40662D13Rat113134133233147532331607Ratregion
38480D13Rat104141133095822030958365Ratregion
40188D13Rat1082191325211062521319Ratregion
38982D13Rat95116133183653031836616Ratregion
39032D13Rat60131132300177923001904Ratregion
39056D13Rat98217133149848431498698Ratregion
39196D13Rat68148131309381813093970Ratregion
41974D13Arb3170133337342533373597Ratregion
42976D13Rat1702041385735218573725Ratregion
42980D13Rat1682371338850903885298Ratregion
42981D13Rat1671731387494688749645Ratregion
42984D13Rat173215133250758332507800Ratregion
42987D13Rat146129133370630033706445Ratregion
42380D13Rat1692021338851243885302Ratregion
40936D13Rat107249131225932012259575Ratregion
41632D13Rat145143132831448328314620Ratregion
44104D12Got77199133309042233090621Ratregion
44552D9Wox211361348421454842193Ratregion
60596D8Got1312151310596181059837Ratregion
60548D6Got78245133403619734036442Ratregion
60549D6Got8165131296238012962545Ratregion
60500D6Got10290131525702115257303Ratregion
60514D6Got1541721335736583573830Ratregion
60520D6Got1932151395368379537052Ratregion
60726D1Mit25149131639167416391823Ratregion
67812D13Uwm4125133015448130154602Ratregion
67816D13Uwm51221361182376118371Ratregion
66489D13Uia101691352717615272035Ratregion
66509D13Mco4254133080776730808001Ratregion
66672D13Mco12290133294474432945030Ratregion
66674D13Mco13180132252526922525438Ratregion
66677D13Mco14250132093231420932792Ratregion
66677D13Mco14250132093255320932792Ratregion
66679D13Mco172251393180249318244Ratregion
67221D13Arb17124133365331433653438Ratregion
67221D13Arb17124133365331433653556Ratregion
67222D13Arb18160133125043131250591Ratregion
67252D13Arb22161379999978000213Ratregion
67806D13Uwm2212133290569932905907Ratregion
67808D13Uwm32861352065815206882Ratregion
1630306D13Got215168131897659418976762Ratregion
1630316D13Got2341391339561093956248Ratregion
1630324D13Got261144133043788430438030Ratregion
1630490D13Got2031441343638754364022Ratregion
1630867D13Got256981377077457707843Ratregion
1631200D13Got265152131491750414917656Ratregion
1631215D13Got258161132201440722014568Ratregion
1631407D13Got26794133190280731902901Ratregion
1631875D13Got2092671314437081443975Ratregion
1632298D13Got221194132198790721988098Ratregion
1581966D13Hmgc52248133228034732280593Ratregion
1582008D13Hmgc37217133073755030737765Ratregion
1627719D13Got247190131526151615261706Ratregion
1582062D13Hmgc78276133396879333969069Ratregion
1628694D13Got257157132550780725507964Ratregion
1628782D13Got224131133228046332280592Ratregion
1628857D13Got201166131897659418976760Ratregion
1628892D13Got2131811375994177599599Ratregion
1628988D13Got251207133249914032499348Ratregion
1629064D13Wox11310131043275910433069Ratregion
1629335D13Got2642861342693284269614Ratregion
1629565D13M1Mit189161133009442230094583Ratregion
1629574D13Got217113132147543221475545Ratregion
1629858D13Uwm8118132228403822284156Ratregion
1638571D13Got27099132147544521475544Ratregion
1638811D13Got2681271379926637992790Ratregion
1638819D13Got220206133161199931612207Ratregion
1638946D13Got2051981324150692415265Ratregion
1639079D13Got219123133064312830643246Ratregion
1639128D13Got210284131314678113147060Ratregion
1640868D13Got222136133163656531636701Ratregion
1641102D13Got273172133204591232046084Ratregion
1641395D13Got272229133002165730021886Ratregion
1641535D13Got2122381372278757228113Ratregion
1632714D13Got228159133352429933524458Ratregion
1632825D13Got218123132018317620183299Ratregion
1632965D13Got24928713394916395198Ratregion
1640473D13Got271147133320926933209416Ratregion
1635014D13Got200270133153391431534184Ratregion
1635185D13Got214116132175082621750935Ratregion
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1635659D13Got2592941365248566525150Ratregion
1635948D13Got263268133240841232408680Ratregion
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1636914D13Got2022281313298941330296Ratregion
1636914D13Got2022281313300681330296Ratregion
1637661D13Got2041881327713802771563Ratregion
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1632552D13Got2552191342693934269612Ratregion
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7205960C1ql2897133147178831472685Ratregion
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5033157RH137803174131261941912619593Ratregion
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502785713.MMHAP25FRE7.seq185133104650931046694Ratregion
5028025MHAa21a5.seq203133068193830682141Ratregion
5031203RH104030153133175624031756393Ratregion
5052085RH94831251133268724032687491Ratregion
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5089241AU0490391481343460724346220Ratregion
5503350Nlk-ps1648131593667915937327Ratregion
5503444Trp53329131206951112069840Ratregion
5503244UniSTS:237455213131672044516720662Ratregion
5504556PMC304100P4282132979355029793832Ratregion
5504091px-14b91601377977757797935Ratregion
5504614PMC316415P3600132285194422852544Ratregion
5504831ha2188868132175760721758475Ratregion
5504863ha263613501316091411610491Ratregion
5504893ha311310371349199894921026Ratregion
5499711UniSTS:234199196133118481531185011Ratregion
5501211PMC155220P1276133053277730533053Ratregion
5499709UniSTS:234193235132971280329713038Ratregion
5500761REN8885250133297249232972742Ratregion
5500971PMC104155P1268132285142722851695Ratregion
5500991PMC114224P2335132199506921995404Ratregion
5503288UniSTS:237739237132744115727441394Ratregion
5503446UniSTS:461954348132285151422851862Ratregion
5501039PMC125347P1447132285148822851935Ratregion
Position Markers

Peak: (D13Rat7)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21311,766,535 - 11,766,737 (+)MAPPER
Rnor_6.01314,279,081 - 14,279,282NCBI
Rnor_5.01319,518,130 - 19,518,331UniSTS
RGSC_v3.4131,084,269 - 1,084,470UniSTS
RGSC_v3.4131,084,268 - 1,084,470RGD
RGSC_v3.1131,084,268 - 1,084,470RGD
Celera1311,796,004 - 11,796,205UniSTS
SHRSP x BN Map131.1799UniSTS
SHRSP x BN Map131.1799RGD
FHH x ACI Map133.68RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131176653532331607Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2303031Bp326Blood pressure QTL 326arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131176653523001904Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133039535141184251Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131176653532331607Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13599466834535351Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general inducing agent: peptidoglycan-polysaccharide (PG-PS) polymers 2316974
qtl_general measurement method: animals were anesthetized, intestines exposed and 0.05 mL PG-PS suspension was injected; after 24 days these animals were exsanguinated and joint diameter of the right rear ankle measured on 21st day of the treatment 2316974
qtl_general number of animals used: 168 F2 females 2316974
qtl_general software used: MapQTL software, Student's t-tests, median tests 2316974