D13Rat107 Marker Search Result - Rat Genome Database

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Marker: D13Rat107

Symbol: D13Rat107
Previously known as: oxsts9402; R0104-B06; 
RGD ID: 40936
Expected Size: 255 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81312,778,308 - 12,778,563 (+)Marker Load Pipeline
mRatBN7.21312,259,320 - 12,259,575 (+)MAPPERmRatBN7.2
Rnor_6.01314,791,887 - 14,792,141NCBIRnor6.0
Rnor_5.01320,026,840 - 20,027,094UniSTSRnor5.0
RGSC_v3.4131,606,290 - 1,606,545RGDRGSC3.4
RGSC_v3.4131,606,291 - 1,606,545UniSTSRGSC3.4
RGSC_v3.1131,606,285 - 1,606,703RGD
Celera1312,282,339 - 12,282,593UniSTS
SHRSP x BN Map131.1799UniSTS
SHRSP x BN Map131.1799RGD
Cytogenetic Map13p13UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Cntnap5bl1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGCAAAATATGTTCATTTGTGCT
Reverse Primer AACGCCACTTTCTGTCCTCT
 
Template 
GACTCTAGAGGATCCCCTTCAAACGCCACTTTCTGTCCTCTAAATTCTGGAAACACACACACAC
ACACACACACACACACACACAGACACAACGAAATGCTCATGAGTTTCAAAATGAACCTGAACAG
GAGAGTAAACCTTTTCAAATCCTGAGAAATTTTCAGAGGGCATTTTATTTACACAAGATTAGTC
TTGTATCATCATTTTTTACTGAGTCTCAAGTCTTCTACACAGAGGCTACAGATATAGCACAAAT
GAACATATTTTGCATTTATATACCAAAAAGAATTTGTCTTCCAGTATGAATTAACAAATTCTTA
CTGTTTAATCTGCAAAGGAGATACTTTGCAAAAAAAAGTGTGCCTTTTGCCTCTGTAATTCCTG
TAATATTTTACATAAGTATTTAACAAGTGTGCCCTGACAATATT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1592077Cntnap5bl1contactin associated protein family member 5B like 1131237846613383261Rat

Nucleotide Sequences
GenBank Nucleotide CH474082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134785618Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131228551734884386Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131244842147969993Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13600200837088115Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
2303031Bp326Blood pressure QTL 326arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131228551723516549Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13143736554Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131228551734884386Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13600200847359539Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13134785618Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 304725 UniSTS