Pign (phosphatidylinositol glycan anchor biosynthesis, class N) - Rat Genome Database

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Gene: Pign (phosphatidylinositol glycan anchor biosynthesis, class N) Rattus norvegicus
Analyze
Symbol: Pign
Name: phosphatidylinositol glycan anchor biosynthesis, class N
RGD ID: 1311346
Description: Predicted to enable mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in cytosol and plasma membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in multiple congenital anomalies-hypotonia-seizures syndrome 1. Orthologous to human PIGN (phosphatidylinositol glycan anchor biosynthesis class N); PARTICIPATES IN glycosylphosphatidylinositol anchor biosynthetic pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GPI ethanolamine phosphate transferase 1; LOC309051; phosphatidylinositol glycan, class N
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81322,173,670 - 22,321,344 (-)NCBIGRCr8
mRatBN7.21321,659,092 - 21,812,932 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1321,662,455 - 21,806,790 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1321,998,808 - 22,126,716 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01323,283,603 - 23,411,510 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01321,967,490 - 22,095,400 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01325,510,593 - 25,662,943 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1325,513,892 - 25,652,473 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01330,779,066 - 30,820,235 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01330,676,676 - 30,740,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41311,668,749 - 11,833,940 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11311,442,630 - 11,828,636 (-)NCBI
Celera1321,552,506 - 21,677,358 (-)NCBICelera
Cytogenetic Map13p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19946888  


Genomics

Comparative Map Data
Pign
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81322,173,670 - 22,321,344 (-)NCBIGRCr8
mRatBN7.21321,659,092 - 21,812,932 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1321,662,455 - 21,806,790 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1321,998,808 - 22,126,716 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01323,283,603 - 23,411,510 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01321,967,490 - 22,095,400 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01325,510,593 - 25,662,943 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1325,513,892 - 25,652,473 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01330,779,066 - 30,820,235 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01330,676,676 - 30,740,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41311,668,749 - 11,833,940 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11311,442,630 - 11,828,636 (-)NCBI
Celera1321,552,506 - 21,677,358 (-)NCBICelera
Cytogenetic Map13p11NCBI
PIGN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381862,017,615 - 62,187,056 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1861,905,255 - 62,187,118 (-)EnsemblGRCh38hg38GRCh38
GRCh371859,708,397 - 59,854,289 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361857,862,437 - 58,005,269 (-)NCBINCBI36Build 36hg18NCBI36
Build 341857,862,439 - 58,005,206NCBI
Celera1856,430,705 - 56,573,517 (-)NCBICelera
Cytogenetic Map18q21.33NCBI
HuRef1856,421,823 - 56,565,179 (-)NCBIHuRef
CHM1_11859,707,055 - 59,849,802 (-)NCBICHM1_1
T2T-CHM13v2.01862,220,799 - 62,389,993 (-)NCBIT2T-CHM13v2.0
Pign
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391105,446,147 - 105,591,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1105,446,147 - 105,591,402 (-)EnsemblGRCm39 Ensembl
GRCm381105,518,421 - 105,663,741 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1105,518,422 - 105,663,677 (-)EnsemblGRCm38mm10GRCm38
MGSCv371107,417,716 - 107,560,253 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361107,348,686 - 107,491,209 (-)NCBIMGSCv36mm8
Celera1108,376,436 - 108,513,016 (-)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map149.63NCBI
Pign
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540245,983,826 - 46,114,752 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540245,979,577 - 46,114,634 (-)NCBIChiLan1.0ChiLan1.0
PIGN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21779,566,515 - 79,708,287 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11865,259,126 - 65,400,898 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01855,415,182 - 55,557,092 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11858,733,740 - 58,875,183 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1858,733,740 - 58,875,183 (-)Ensemblpanpan1.1panPan2
PIGN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1114,684,026 - 14,791,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl114,685,694 - 14,805,691 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha115,651,440 - 15,758,632 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0114,544,736 - 14,652,948 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl114,544,755 - 14,652,948 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1114,580,565 - 14,688,156 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0114,513,807 - 14,621,155 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0114,760,723 - 14,868,433 (+)NCBIUU_Cfam_GSD_1.0
Pign
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494427,882,060 - 27,991,301 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364973,124,557 - 3,234,061 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364973,121,184 - 3,230,912 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1159,317,734 - 159,417,327 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11159,317,734 - 159,417,335 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21176,781,531 - 176,879,102 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIGN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11817,589,582 - 17,725,823 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1817,589,631 - 17,725,823 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660607,936,049 - 8,099,945 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pign
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247927,712,113 - 7,916,160 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247927,713,042 - 7,916,177 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pign
947 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:493
Count of miRNA genes:243
Interacting mature miRNAs:291
Transcripts:ENSRNOT00000020752
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131176653532331607Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13599466834535351Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2303031Bp326Blood pressure QTL 326arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131176653523001904Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131176653532331607Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat

Markers in Region
D13Got214  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21321,750,826 - 21,750,935 (+)MAPPERmRatBN7.2
Rnor_6.01325,603,293 - 25,603,403NCBIRnor6.0
Rnor_5.01330,765,846 - 30,765,956UniSTSRnor5.0
RGSC_v3.41311,776,297 - 11,776,407UniSTSRGSC3.4
Celera1321,628,425 - 21,628,535UniSTS
Cytogenetic Map13p13UniSTS
RH133180  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21321,662,061 - 21,662,264 (+)MAPPERmRatBN7.2
Rnor_6.01325,513,917 - 25,514,119NCBIRnor6.0
Rnor_5.01330,676,701 - 30,676,903UniSTSRnor5.0
RGSC_v3.41311,668,774 - 11,668,976UniSTSRGSC3.4
Celera1321,552,531 - 21,552,733UniSTS
Cytogenetic Map13p13UniSTS
BE109920  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21321,724,741 - 21,724,910 (+)MAPPERmRatBN7.2
Rnor_6.01325,576,690 - 25,576,858NCBIRnor6.0
Rnor_5.01330,739,846 - 30,740,014UniSTSRnor5.0
RGSC_v3.41311,731,988 - 11,732,156UniSTSRGSC3.4
Celera1321,615,249 - 21,615,417UniSTS
Cytogenetic Map13p13UniSTS
AU047833  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21321,665,905 - 21,666,152 (+)MAPPERmRatBN7.2
Rnor_6.01325,518,049 - 25,518,295NCBIRnor6.0
Rnor_5.01330,680,833 - 30,681,079UniSTSRnor5.0
RGSC_v3.41311,672,619 - 11,672,865UniSTSRGSC3.4
Celera1321,556,384 - 21,556,652UniSTS
Cytogenetic Map13p13UniSTS
ha2188  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21321,757,607 - 21,758,475 (+)MAPPERmRatBN7.2
Rnor_6.01325,610,041 - 25,610,908NCBIRnor6.0
Rnor_5.01330,772,594 - 30,773,461UniSTSRnor5.0
RGSC_v3.41311,783,080 - 11,783,947UniSTSRGSC3.4
Celera1321,635,208 - 21,636,075UniSTS
Cytogenetic Map13p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ976364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000020752   ⟹   ENSRNOP00000020752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1321,662,455 - 21,806,790 (-)Ensembl
Rnor_6.0 Ensembl1325,513,892 - 25,652,473 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107206   ⟹   ENSRNOP00000094088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1321,688,166 - 21,806,780 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112543   ⟹   ENSRNOP00000091372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1321,662,570 - 21,806,790 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117600   ⟹   ENSRNOP00000094630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1321,662,999 - 21,806,780 (-)Ensembl
RefSeq Acc Id: NM_001100584   ⟹   NP_001094054
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,176,615 - 22,321,344 (-)NCBI
mRatBN7.21321,662,037 - 21,806,774 (-)NCBI
Rnor_6.01325,513,892 - 25,656,785 (-)NCBI
Rnor_5.01330,676,676 - 30,740,322 (-)NCBI
Rnor_5.01330,779,066 - 30,820,235 (-)NCBI
RGSC_v3.41311,668,749 - 11,833,940 (-)RGD
Celera1321,552,506 - 21,677,358 (-)RGD
Sequence:
RefSeq Acc Id: XM_039090846   ⟹   XP_038946774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,332 (-)NCBI
mRatBN7.21321,662,037 - 21,806,903 (-)NCBI
RefSeq Acc Id: XM_039090847   ⟹   XP_038946775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,177,571 - 22,321,332 (-)NCBI
mRatBN7.21321,662,986 - 21,806,907 (-)NCBI
RefSeq Acc Id: XM_063272409   ⟹   XP_063128479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,331 (-)NCBI
RefSeq Acc Id: XM_063272410   ⟹   XP_063128480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,331 (-)NCBI
RefSeq Acc Id: XM_063272411   ⟹   XP_063128481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,332 (-)NCBI
RefSeq Acc Id: XM_063272412   ⟹   XP_063128482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,329 (-)NCBI
RefSeq Acc Id: XM_063272413   ⟹   XP_063128483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,329 (-)NCBI
RefSeq Acc Id: XM_063272414   ⟹   XP_063128484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,332 (-)NCBI
RefSeq Acc Id: XM_063272415   ⟹   XP_063128485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,331 (-)NCBI
RefSeq Acc Id: XM_063272416   ⟹   XP_063128486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,329 (-)NCBI
RefSeq Acc Id: XM_063272417   ⟹   XP_063128487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,309,199 (-)NCBI
RefSeq Acc Id: XM_063272418   ⟹   XP_063128488
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,223,656 - 22,321,332 (-)NCBI
RefSeq Acc Id: XM_063272419   ⟹   XP_063128489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,267,908 (-)NCBI
RefSeq Acc Id: XR_010056922
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,213,215 - 22,321,332 (-)NCBI
RefSeq Acc Id: NP_001094054   ⟸   NM_001100584
- UniProtKB: A6JST6 (UniProtKB/TrEMBL),   A0A8I6AFB4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020752   ⟸   ENSRNOT00000020752
RefSeq Acc Id: XP_038946774   ⟸   XM_039090846
- Peptide Label: isoform X1
- UniProtKB: E9PTA5 (UniProtKB/TrEMBL),   A0A8I6AFB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946775   ⟸   XM_039090847
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AFB4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094088   ⟸   ENSRNOT00000107206
Ensembl Acc Id: ENSRNOP00000091372   ⟸   ENSRNOT00000112543
Ensembl Acc Id: ENSRNOP00000094630   ⟸   ENSRNOT00000117600
RefSeq Acc Id: XP_063128484   ⟸   XM_063272414
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AFB4 (UniProtKB/TrEMBL),   E9PTA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128481   ⟸   XM_063272411
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AFB4 (UniProtKB/TrEMBL),   E9PTA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128480   ⟸   XM_063272410
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063128485   ⟸   XM_063272415
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AFB4 (UniProtKB/TrEMBL),   E9PTA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128479   ⟸   XM_063272409
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063128486   ⟸   XM_063272416
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AFB4 (UniProtKB/TrEMBL),   E9PTA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128483   ⟸   XM_063272413
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AFB4 (UniProtKB/TrEMBL),   E9PTA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128482   ⟸   XM_063272412
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AFB4 (UniProtKB/TrEMBL),   E9PTA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128487   ⟸   XM_063272417
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063128489   ⟸   XM_063272419
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063128488   ⟸   XM_063272418
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GKK6 (UniProtKB/TrEMBL)
Protein Domains
GPI ethanolamine phosphate transferase 1 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PTA5-F1-model_v2 AlphaFold E9PTA5 1-931 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311346 AgrOrtholog
BioCyc Gene G2FUF-18633 BioCyc
Ensembl Genes ENSRNOG00000014866 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020752.7 UniProtKB/TrEMBL
  ENSRNOT00000107206.1 UniProtKB/TrEMBL
  ENSRNOT00000112543.1 UniProtKB/TrEMBL
  ENSRNOT00000117600.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.720.10 UniProtKB/TrEMBL
InterPro Alkaline_phosphatase_core UniProtKB/TrEMBL
  GPI_EtnP_transferase_1 UniProtKB/TrEMBL
  GPI_EtnP_transferase_1_C UniProtKB/TrEMBL
  Phosphodiest/P_Trfase UniProtKB/TrEMBL
  PIGN_N UniProtKB/TrEMBL
KEGG Report rno:309051 UniProtKB/TrEMBL
NCBI Gene 309051 ENTREZGENE
PANTHER GPI ETHANOLAMINE PHOSPHATE TRANSFERASE 1 UniProtKB/TrEMBL
  PigN UniProtKB/TrEMBL
Pfam Phosphodiest UniProtKB/TrEMBL
  PigN UniProtKB/TrEMBL
PhenoGen Pign PhenoGen
RatGTEx ENSRNOG00000014866 RatGTEx
Superfamily-SCOP Alkaline_phosphatase_core UniProtKB/TrEMBL
UniProt A0A8I6AFB4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B1A6_RAT UniProtKB/TrEMBL
  A0A8I6GKK6 ENTREZGENE, UniProtKB/TrEMBL
  A6JST6 ENTREZGENE, UniProtKB/TrEMBL
  E9PTA5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-09 Pign  phosphatidylinositol glycan anchor biosynthesis, class N  Pign  phosphatidylinositol glycan, class N  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Pign  phosphatidylinositol glycan, class N   Pign_predicted  phosphatidylinositol glycan, class N (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pign_predicted  phosphatidylinositol glycan, class N (predicted)      Symbol and Name status set to approved 70820 APPROVED