D13Rat108 Marker Search Result - Rat Genome Database

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Marker: D13Rat108

Symbol: D13Rat108
Previously known as: oxsts9403; R0230-B09; 
RGD ID: 40188
Expected Size: 213 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8132,528,752 - 2,528,965 (+)Marker Load Pipeline
mRatBN7.2132,521,106 - 2,521,319 (+)MAPPERmRatBN7.2
Rnor_6.0135,024,033 - 5,024,245NCBIRnor6.0
Rnor_5.0134,999,082 - 4,999,294UniSTSRnor5.0
RGSC_v3.41321,828,843 - 21,829,056RGDRGSC3.4
RGSC_v3.41321,828,844 - 21,829,056UniSTSRGSC3.4
RGSC_v3.11321,831,584 - 21,831,797RGD
Celera133,480,501 - 3,480,713UniSTS
SHRSP x BN Map130.29RGD
SHRSP x BN Map130.29UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer ACCTTTGTTCCAATTTCCCC
Reverse Primer GGAAGGTGACAATCTACCATTAA
 
Template 
CCTGGAGATCAATGTGGAAGGTGACAATCTACCATTAACTTAGAAATTCTAGGATGGATCACAT
ACACACACACACACACACACACACACACACACACACACGTGTCACGACGTGGTGACGACACAAC
ACACACAGTGATACAGGTNTAGGAATAGAGGAAATTTGGTTTNTACAGTAAGTGGAACAAATTG
AGTCACATGACTACCAGTATGAGGGGAAATTGGAACAAAGGTACACAGGAAGAGACTAAGGGGT
ACCGAGNCNCGAATTNGTAATACATGGTACATAGTGTTTCTGTGTGAAATTGTTATCCGCTCAC
AATTACCACACAACATACGAGACCGGAAGCATAAAGTGTAAAGCTGGGGTGCTAATGAGTGAGN
TAACCACTTAATTGCGTTGCGCNCATGNNCNTTTCCAGTCGGGAAANTGTCGTGNCAGATGCAT
TAATGNNTCCGNCNACGCNNGGGGANAGCGGGTTNGTAATGGGCCNNNGNNNGTTTTNCTTCAA
CANGTANGAGGGNAANNTGTTNCCTNCCCCNNNGGCNTGAAANNNNNNAANGGNNNCNNGGTTG
CCCNNNNCNANTCCNTTGNGTGNCCGAATCGNANCCCTNTAACAAANANCCAAAGGTGNNTNTC

Region

Nucleotide Sequences
GenBank Nucleotide JH617708.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat


Additional Information