LOC120096454 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120096454 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120096454
Name: U6 spliceosomal RNA
RGD ID: 41208883
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81333,204,701 - 33,204,807 (+)NCBIGRCr8
mRatBN7.21330,651,905 - 30,652,011 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1330,651,905 - 30,652,011 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map13q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120096454
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81333,204,701 - 33,204,807 (+)NCBIGRCr8
mRatBN7.21330,651,905 - 30,652,011 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1330,651,905 - 30,652,011 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map13q11NCBI
RNU6-94P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381550,347,425 - 50,347,529 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1550,347,423 - 50,347,529 (-)EnsemblGRCh38hg38GRCh38
GRCh371550,639,622 - 50,639,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q21.2NCBI
CHM1_11550,757,454 - 50,757,558 (-)NCBICHM1_1
T2T-CHM13v2.01548,155,582 - 48,155,686 (-)NCBIT2T-CHM13v2.0
Gm26227
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392135,868,071 - 135,868,171 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2135,868,071 - 135,868,171 (-)EnsemblGRCm39 Ensembl
GRCm382136,026,151 - 136,026,251 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2136,026,151 - 136,026,251 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2F3NCBI
LOC119865071
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2145,892,201 - 45,892,307 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02147,548,321 - 47,548,427 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2147,548,321 - 47,548,427 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12146,536,505 - 46,536,611 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02146,702,063 - 46,702,169 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02147,260,027 - 47,260,133 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131176653532331607Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133039535141184251Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131176653532331607Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13599466834535351Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005492860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000086037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1330,651,905 - 30,652,011 (+)Ensembl
RefSeq Acc Id: XR_005492860
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81333,204,701 - 33,204,807 (+)NCBI
mRatBN7.21330,651,905 - 30,652,011 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-18520 BioCyc
Ensembl Genes ENSRNOG00000064320 Ensembl
NCBI Gene LOC120096454 ENTREZGENE
PhenoGen LOC120096454 PhenoGen
RatGTEx ENSRNOG00000064320 RatGTEx
RNAcentral URS00006C7AD2 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120096454  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL