D13Rat169 Marker Search Result - Rat Genome Database

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Marker: D13Rat169

Symbol: D13Rat169
Previously known as: R0339-C12; oxsts9464; 
RGD ID: 42380
Expected Size: 202 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2133,885,124 - 3,885,302 (+)MAPPERmRatBN7.2
Rnor_6.0136,836,597 - 6,836,774NCBIRnor6.0
Rnor_5.01312,114,539 - 12,114,716UniSTSRnor5.0
RGSC_v3.41323,227,922 - 23,228,100RGDRGSC3.4
RGSC_v3.41323,227,923 - 23,228,100UniSTSRGSC3.4
RGSC_v3.11323,230,663 - 23,230,841RGD
Celera134,834,975 - 4,835,152UniSTS
SHRSP x BN Map131.0999UniSTS
SHRSP x BN Map131.0999RGD
FHH x ACI Map131.4701RGD
Cytogenetic Map13p12-p11UniSTS
Is Marker For: Genes:   Cntnap5c  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGAGCCATGTCACCTATGGT
Reverse Primer GGTCATGCCTCCACTCAACT
 
Template 
CCCCACTAATCATGAGCCATGTCACCTATGGTCTTTGACAAACCTGTAGACATATGAACACTCA
TACATATATGAACACATGGACACACAGATGCACCACACATACATACACACACACACACATACTC
ACACACACACACATACACACACACACACACACACACACACACACACACACACACACACACACAC
AGAGTTGAGTGGAGGCATGACCTGNGGAAGCTGTTNCGAACTGNATTTCAGGAGNTCCCCACAA
GCTATGGGNTAGTCATGATAGAGGGTTCTCTGNCAGAANTTTGTGTTACTCGTGGTACCGAGTC
TCGAATTCGTAATTCATGGTTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCC
ACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTC
ACATTAATTGCGTTGCGCNCACTGCCCGNTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATT
AATGAATCGGCCAACGCGCGGGGAGAGGNGGTTTGGTATTGGGCGCCAGGGTGGTTTTTCTTTT
CACCAGTGAGACGGGNAACAGCTGATTGCCCTTCACCGCCTGGCCCTGAGAGAGTTGCAGCAAG
CGGTCCACGTGGTTTGCCCCAGCAGGCGAAAATCTGTTTGATGGTGGTTNGAAATCGGCAAAAT
CNTTATAAATCNNAGATAGCCGAGATAGGGTTGAGTGTTGTTCAGTTTGGAACAGATCATATTA
AGACGTGGATCAAGTCANGGGGAAAANGTTATCAGGGCGAGGCACTAGGAACATCACCAATNGT
TTT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1566343Cntnap5ccontactin associated protein-like 5C1335136154546285Rat

Nucleotide Sequences
GenBank Nucleotide JH617714.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 297846 UniSTS
UniSTS 226544 UniSTS