ACI/EurMcwi (MCW)
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Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA v0.7.7 and GATK v3.2-2 |
Breeder: |
Medical College of Wisconsin |
Description: |
Provided by the Medical College of Wisconsin (Dr. Howard Jacob) |
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ACI/EurMcwi (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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ACI/N (MCW)
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Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
Platform: |
SOLiD 4 and 5500 |
Secondary Analysis: |
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu |
Breeder: |
National Institutes of Health |
Description: |
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin |
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BBDP/Wor (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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BN/SsN (MCW)
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Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
Platform: |
SOLiD 4 and 5500 |
Secondary Analysis: |
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu |
Breeder: |
National Institutes of Health |
Description: |
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin |
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Buf/N (MCW)
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Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
Platform: |
SOLiD 4 and 5500 |
Secondary Analysis: |
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu |
Breeder: |
National Institutes of Health |
Description: |
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin |
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COP/CrCrl (MCW & UW)
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Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull) |
Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA v0.7.7 and GATK v3.2-2 |
Breeder: |
Charles River Laboratories |
Description: |
Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull) |
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F344/NCrl (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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F344/NRrrc (MCW)
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Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
Platform: |
SOLiD 4 and 5500 |
Secondary Analysis: |
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu |
Breeder: |
National Institutes of Health |
Description: |
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin |
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FHH/EurMcwi (MCW)
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Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA v0.7.7 and GATK v3.2-2 |
Breeder: |
Medical College of Wisconsin |
Description: |
Provided by the Medical College of Wisconsin (Dr. Howard Jacob) |
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FHH/EurMcwi (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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FHL/EurMcwi (MCW)
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Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA v0.7.7 and GATK v3.2-2 |
Breeder: |
Medical College of Wisconsin |
Description: |
Provided by the Medical College of Wisconsin (Dr. Howard Jacob) |
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FHL/EurMcwi (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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GH/OmrMcwi (MCW)
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Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA v0.7.7 and GATK v3.2-2 |
Breeder: |
Medical College of Wisconsin |
Description: |
Provided by the Medical College of Wisconsin (Dr. Howard Jacob) |
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GK/Ox (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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LE/Stm (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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LEW/Crl (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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LEW/NCrlBR (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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LH/MavRrrc (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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LL/MavRrrc (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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LN/MavRrrc (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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M520/N (MCW)
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Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
Platform: |
SOLiD 4 and 5500 |
Secondary Analysis: |
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu |
Breeder: |
National Institutes of Health |
Description: |
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin |
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MHS/Gib (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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MNS/Gib (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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MR/N (MCW)
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Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
Platform: |
SOLiD 4 and 5500 |
Secondary Analysis: |
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu |
Breeder: |
National Institutes of Health |
Description: |
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin |
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SBH/Ygl (MCW)
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Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA v0.7.7 and GATK v3.2-2 |
Breeder: |
Medical College of Wisconsin |
Description: |
SBH/Ygl sequenced by MCW |
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SBH/Ygl (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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SBN/Ygl (MCW)
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Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA v0.7.7 and GATK v3.2-2 |
Breeder: |
Medical College of Wisconsin |
Description: |
SBN/Ygl sequenced by MCW |
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SBN/Ygl (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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SHR/NHsd (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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SHRSP/Gcrc (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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SR/JrHsd (MCW)
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Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA v0.7.7 and GATK v3.2-2 |
Breeder: |
Harlan Laboratories |
Description: |
Provided by the Medical College of Wisconsin (Dr. Howard Jacob) |
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SR/JrHsd (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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SS/Jr (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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SS/JrHsdMcwi (MCW)
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Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA v0.7.7 and GATK v3.2-2 |
Breeder: |
Medical College of Wisconsin |
Description: |
Provided by the Medical College of Wisconsin (Dr. Howard Jacob) |
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SS/JrHsdMcwi (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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WAG/Rij (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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WKY/Gcrc (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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WKY/N (MCW)
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Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
Platform: |
SOLiD 4 and 5500 |
Secondary Analysis: |
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu |
Breeder: |
National Institutes of Health |
Description: |
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin |
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WKY/NCrl (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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WKY/NHsd (RGD)
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Platform: |
Illumina HiSeq 2000 |
Secondary Analysis: |
BWA mem 0.7.15, GATK v.3.6-0 |
Description: |
Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD |
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WN/N (MCW)
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Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
Platform: |
SOLiD 4 and 5500 |
Secondary Analysis: |
liftOver (Batch Coordinate Conversion)--genome.ucsc.edu |
Breeder: |
National Institutes of Health |
Description: |
Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin |
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