D13Rat93 Marker Search Result - Rat Genome Database

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Marker: D13Rat93

Symbol: D13Rat93
Previously known as: R0055-B01; oxsts9516; 
RGD ID: 37396
Expected Size: 227 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2131,701,177 - 1,701,426 (+)MAPPERmRatBN7.2
Rnor_6.0133,736,758 - 3,737,004NCBIRnor6.0
Rnor_5.0133,711,688 - 3,711,934UniSTSRnor5.0
RGSC_v3.41320,971,361 - 20,971,607UniSTSRGSC3.4
RGSC_v3.41320,971,360 - 20,971,607RGDRGSC3.4
RGSC_v3.11320,974,097 - 20,974,500RGD
Celera132,668,510 - 2,668,756UniSTS
SHRSP x BN Map131.1799UniSTS
SHRSP x BN Map131.1799RGD
FHH x ACI Map132.61RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AAAGACCTCTCCCTCTACTCCC
Reverse Primer AAAGGGGTGAAGGGGAGTAA
 
Template 
AGCATGCTGCAGGTCGACTCTAGAGGATCCCCACACATACAAAAACATGTGCATACATTCATTG
TCACACACATAGAAAGAGCTAAGCTATGACTAGACAACTGTTAATTTCACTAGGGGACTTGCAG
TTGGCAGGTGAAGACTATATGGGTAAATTTTGTTCCCTCTATTACAAAGAGATAAAAAAGGGGT
GAAGGGGAGTAAATCTCACTGTTCTACCTTCCATTTTAATTGATGTTTTGTTCTTACATAATTT
TCTTGTAGTGTTTAGAAAATAGTGGTTCATTAAATGTGACAGCTCTTCTGAATATAGATGCATG
TCAGTGTGTGAGAGAATGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA
AAATAGGGAGTAGAGGGAGAGGTCTTTGTGTGGGTACCGAGCTCGAATTCGTAATCATGGTCAT
AGCTGTNTCCTGTGTGANATTGTTATCCGCTCACAATTCCACACAACATAC

Region

Nucleotide Sequences
GenBank Nucleotide CH474024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat


Additional Information

Database Acc Id Source(s)
UniSTS 226590 UniSTS