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Gene: Cntnap5c (contactin associated protein-like 5C) Rattus norvegicus

Analyze

No known orthologs.

Symbol:

Cntnap5c

Name:

contactin associated protein-like 5C

RGD ID:

1566343

Description:

Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be located in basement membrane; cell junction; and membrane. Orthologous to human CNTNAP5 (contactin associated protein family member 5).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Caspr5-4; cell recognition molecule Caspr5-3; cell recognition molecule Caspr5-4; cell recognition molecule Caspr5c; cell recognition molecule Caspr5d; Cntnap5; Cntnap5d; contactin associated protein-like 5; contactin associated protein-like 5-4; contactin-associated protein like 5-4; contactin-associated protein-like 5d; LOC297846; RGD1566343; similar to contactin associated protein-like 5 isoform 1

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Other homologs ²				less info ...
Homo sapiens (human):	CNTNAP5 (contactin associated protein family member 5)	HGNC	EggNOG, OrthoDB, Panther, Treefam
Homo sapiens (human):	CNTNAP2 (contactin associated protein 2)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	CNTNAP5 (contactin associated protein family member 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cntnap5a (contactin associated protein-like 5A)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	cntnap5l (contactin associated protein-like 5 like)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cntnap5b (contactin associated protein-like 5b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cntnap5a (contactin associated protein-like 5a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Nrx-IV	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nlr-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	3,521,265 - 4,553,884 (+)	NCBI		GRCr8
mRatBN7.2	13	3,513,615 - 4,546,285 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	3,514,198 - 4,542,745 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	3,539,615 - 4,587,031 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	4,848,877 - 5,896,314 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	3,519,073 - 4,566,500 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	6,312,302 - 7,538,647 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	6,679,368 - 7,537,275 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	11,594,156 - 12,421,307 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	13	12,597,108 - 12,804,561 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	22,856,230 - 23,913,512 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	4,468,107 - 5,491,533 (+)	NCBI		Celera
Cytogenetic Map	13	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IEA)

Cellular Component

basement membrane (IEA)

cell junction (IEA)

membrane (IEA)

Molecular Function

calcium ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16845472

Genomics

Variants

Variants in Cntnap5c
8044 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	175
Count of miRNA genes:	132
Interacting mature miRNAs:	141
Transcripts:	ENSRNOT00000067198
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2317027	Aia22	Adjuvant induced arthritis QTL 22	2.29		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	13	1	34266636	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
738036	Lnnr4	Liver neoplastic nodule remodeling QTL 4	3.64		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	1	42356786	Rat

Markers in Region

D13Rat9

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	3,618,634 - 3,618,775 (+)	Marker Load Pipeline
mRatBN7.2	13	3,611,007 - 3,611,148 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	6,411,215 - 6,411,355	NCBI	Rnor6.0
Rnor_5.0	13	11,693,801 - 11,693,941	UniSTS	Rnor5.0
RGSC_v3.4	13	22,952,155 - 22,952,295	UniSTS	RGSC3.4
RGSC_v3.4	13	22,952,154 - 22,952,295	RGD	RGSC3.4
RGSC_v3.1	13	22,954,895 - 22,955,036	RGD
Celera	13	4,564,861 - 4,565,001	UniSTS
SHRSP x BN Map	13	1.1799	UniSTS
SHRSP x BN Map	13	1.1799	RGD
Cytogenetic Map	13	p12-p11	UniSTS

D13Rat169

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	3,892,742 - 3,892,920 (+)	Marker Load Pipeline
mRatBN7.2	13	3,885,124 - 3,885,302 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	6,836,597 - 6,836,774	NCBI	Rnor6.0
Rnor_5.0	13	12,114,539 - 12,114,716	UniSTS	Rnor5.0
RGSC_v3.4	13	23,227,922 - 23,228,100	RGD	RGSC3.4
RGSC_v3.4	13	23,227,923 - 23,228,100	UniSTS	RGSC3.4
RGSC_v3.1	13	23,230,663 - 23,230,841	RGD
Celera	13	4,834,975 - 4,835,152	UniSTS
SHRSP x BN Map	13	1.0999	UniSTS
SHRSP x BN Map	13	1.0999	RGD
FHH x ACI Map	13	1.4701	RGD
Cytogenetic Map	13	p12-p11	UniSTS

D13Rat168

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	3,892,708 - 3,892,916 (+)	Marker Load Pipeline
mRatBN7.2	13	3,885,090 - 3,885,298 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	6,836,563 - 6,836,770	NCBI	Rnor6.0
Rnor_5.0	13	12,114,505 - 12,114,712	UniSTS	Rnor5.0
RGSC_v3.4	13	23,227,889 - 23,228,096	UniSTS	RGSC3.4
RGSC_v3.4	13	23,227,888 - 23,228,096	RGD	RGSC3.4
RGSC_v3.1	13	23,230,629 - 23,230,837	RGD
Celera	13	4,834,941 - 4,835,148	UniSTS
SHRSP x BN Map	13	1.1799	UniSTS
SHRSP x BN Map	13	1.1799	RGD
Cytogenetic Map	13	p12-p11	UniSTS

D6Got154

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	3,573,658 - 3,573,830 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	6,373,876 - 6,374,047	NCBI	Rnor6.0
Rnor_5.0	13	11,656,462 - 11,656,633	UniSTS	Rnor5.0
RGSC_v3.4	13	22,914,852 - 22,915,024	RGD	RGSC3.4
RGSC_v3.4	13	22,914,853 - 22,915,024	UniSTS	RGSC3.4
RGSC_v3.1	13	22,917,594 - 22,917,765	RGD
Celera	13	4,527,108 - 4,527,279	UniSTS
RH 3.4 Map	6	776.09	UniSTS
RH 3.4 Map	6	776.09	RGD
Cytogenetic Map	13	p12-p11	UniSTS

D13Got264

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	4,269,328 - 4,269,614 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	7,267,590 - 7,267,875	NCBI	Rnor6.0
Rnor_5.0	13	12,534,460 - 12,534,745	UniSTS	Rnor5.0
RGSC_v3.4	13	23,617,250 - 23,617,535	UniSTS	RGSC3.4
Celera	13	5,218,546 - 5,218,831	UniSTS
Cytogenetic Map	13	p12-p11	UniSTS

D13Got234

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	3,956,109 - 3,956,248 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	6,908,135 - 6,908,273	NCBI	Rnor6.0
Rnor_5.0	13	12,186,077 - 12,186,215	UniSTS	Rnor5.0
RGSC_v3.4	13	23,298,909 - 23,299,047	UniSTS	RGSC3.4
Celera	13	4,905,852 - 4,905,989	UniSTS
Cytogenetic Map	13	p12-p11	UniSTS

D13Got203

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	4,371,476 - 4,371,622 (+)	Marker Load Pipeline
mRatBN7.2	13	4,363,875 - 4,364,022 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	7,361,000 - 7,361,145	NCBI	Rnor6.0
Rnor_5.0	13	12,628,290 - 12,628,431	NCBI	Rnor5.0
RGSC_v3.4	13	23,714,026 - 23,714,171	UniSTS	RGSC3.4
Cytogenetic Map	13	p12-p11	UniSTS

D13Got255

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	4,269,393 - 4,269,612 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	7,267,655 - 7,267,873	NCBI	Rnor6.0
Rnor_5.0	13	12,534,525 - 12,534,743	UniSTS	Rnor5.0
RGSC_v3.4	13	23,617,315 - 23,617,533	UniSTS	RGSC3.4
Celera	13	5,218,611 - 5,218,829	UniSTS
Cytogenetic Map	13	p12-p11	UniSTS

D13Got236

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	7,041,710 - 7,041,875	NCBI	Rnor6.0
Rnor_5.0	13	12,320,126 - 12,320,291	UniSTS	Rnor5.0
RGSC_v3.4	13	23,434,122 - 23,434,327	UniSTS	RGSC3.4
Celera	13	5,040,381 - 5,040,586	UniSTS
Cytogenetic Map	13	p12-p11	UniSTS

AU048969

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	4,126,461 - 4,126,661 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	7,092,403 - 7,092,602	NCBI	Rnor6.0
Rnor_5.0	13	12,362,625 - 12,362,824	UniSTS	Rnor5.0
RGSC_v3.4	13	23,470,008 - 23,470,207	UniSTS	RGSC3.4
Celera	13	5,076,433 - 5,076,632	UniSTS
Cytogenetic Map	13	p12-p11	UniSTS

AU049039

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	4,346,072 - 4,346,220 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	7,343,579 - 7,343,726	NCBI	Rnor6.0
Rnor_5.0	13	12,610,449 - 12,610,596	UniSTS	Rnor5.0
RGSC_v3.4	13	23,696,246 - 23,696,393	UniSTS	RGSC3.4
Celera	13	5,294,973 - 5,295,120	UniSTS
Cytogenetic Map	13	p12-p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
6	2	23	101	31	29	16	1	16	68	32	93	12	55	13

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001047866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BN000871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000046060 ⟹ ENSRNOP00000044394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	3,514,198 - 4,542,745 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000067198 ⟹ ENSRNOP00000062287

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	3,727,163 - 4,542,745 (+)	Ensembl
Rnor_6.0 Ensembl	13	6,679,368 - 7,537,275 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092965 ⟹ ENSRNOP00000076029

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	6,679,369 - 7,382,961 (+)	Ensembl

RefSeq Acc Id:

NM_001047866 ⟹ NP_001041331

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	3,521,544 - 4,553,884 (+)	NCBI
mRatBN7.2	13	3,513,908 - 4,546,285 (+)	NCBI
Rnor_6.0	13	6,312,877 - 7,537,275 (+)	NCBI
Rnor_5.0	13	11,594,156 - 12,421,307 (+)	NCBI
Rnor_5.0	13	12,597,108 - 12,804,561 (+)	NCBI
RGSC_v3.4	13	22,856,230 - 23,913,512 (+)	RGD
Celera	13	4,468,107 - 5,491,533 (+)	RGD

Sequence:

show sequence

ATGAATTCTGTACGGAGACTGAACAGCATTTTGACTTTGGTTCTTTCTGGCTTGTGGCATTTAG
GATTAACAGCGACAAATTACAATTGTGATGAACCATTGGCCTCCTTCCTCTCACCACTGGCTTT
TTTCAGCTCCTCAGATCTCAATGGAAGATTCAGCCCACCTCAACTCAACTGGAGAATAGGATCT
GGTGGTTGGTCCCCAGCAGTTTCCAATGCCCATCAGTGGCTTCAGATTGACCTGGGAAACAGAG
TGGAGATTACAGCGGTGGCTACACAGGGAAGATATGGGAGCACTGACTGGGTGACAAGCTATCG
CCTGATGTTCAGTGATACTGGGCACAACTGGCAACAGTACAAGCAAAAAGACAGCATCTGGACA
TTTGTCGGAAACACAAATGCTGATGGTGTGGTTTACCACAAGCTGCTGCACTCCATGAGAGCCC
GCTTTGTTCGCTTTGTGCCCCTGGAATGGAATTCAAATGGAAAGATTGGCATGAGAGTGGAGGT
CTATGGATGCTCCTACAAATCAGATATTGTTGGCTTTGATGGCCAGAGCACGCTTTTGTATAGA
TTCAATCAGAAGACAATGAGCACCCTCAAAGACGTGATTTCCCTGAAGTTCAAGAGCATGCAAG
GAGATGGAGTTCTATTCCACGGAGAAGGACAACGTGGAGACCACATTACCTTGGAGTTGCAGAA
GGGCAGGCTAGCCCTATACCTGAACATAGATGGCAGCAAAGCCCGGCTCAGCATCATTGCACCC
TTGGCCATTCTGGGTAGCCTTCTGGATGACCAGCACTGGCACTCGGTTCTCCTGGAGCGTGTGG
GCAAGCAGGCAAACTTCACTGTGGACAGGAACACACAGCACTTCCAGATCAAGGGTGAGACCGA
TGCCCTGGATATTGATTATGAGCTCAGTTTTGGAGGAATCCCAGTACCAAGCAAACCTGGGACC
TTTTTAAAGAAAAACTTCCATGGCTGTATTGAAAACGTTTACTACAATGGAGTGAACATAATTG
ATTTGGCTAAAAGACGCAAGCATCAGATCTACTCAGGCAATGTTACATTTTCCTGCTCAGAACC
AGAAATTGTGCCCATCACATTTGTCAACTCCAGGAGCAGTTATTTGCTGCTTCCTGGCATCCCC
CAAATTCATGGTCTGTCAGTGAGTTTCCACTTTCGGACATGGAATGAAGATGGTCTGCTTCTGT
CCACAGAACTGTCTGAAGGCTCAGGGACCCTGCTGCTCATCCTGGATGGTGGGAGTCTGAGGCT
CCTTATTAAGAAAGTAGCAAGACATGGAACTGAAATCATCACAGGAAGCAGCTTGAATGATGGC
CTCTGGCATTCTGTCAGCATCAATGCCAGGAGAAATCGTGTTACTCTCACACTGGATAATGATG
CTGCTTCCCCAGCTCTGGACACCTCTCAGCTACAGATTTATTCTGGAAATAGTTACTACTTTGG
AGGGTGCCCTGACAATCTTACCGATTCCCAATGCTTAAACCCCATTAAGGCTTTCCAAGGCTGC
ATGAGGCTCATCTTTATTGATAACCAGCCCAAGGACCTCATTTCAGTTCAGCAAGGTTCCATGG
GGAATTTTAGTGATTTACACATTGATCTGTGTAGCATCAAAGACAGGTGTTTGCCAAACTACTG
TGAGCATGGAGGACATTGTGCCCAAAACTGGACTACCTTCTACTGCAACTGTAGTGACACTGGT
TACACAGGAGCTACTTGTCATGACTCCGTCTATGAGCAATCTTGTGAGGTGTATAGACACAAAG
GACACACAGCTGGGTTCTTCTATGTTGACTCTGATGGCAGTGGGCCACTGGGACCCCTTCAGGT
GTACTGCAATATTACTGAGGACAAGATCTGGATGACAGTTCAGCACAATAACACAGAGCTAACT
TGGGTACAGATTTCCAATGCTGAGAAGGCCTATGCCATGACCTTCAACTATGGTGGCAGTATGG
AGCAGCTGGAAGCTCTGATTGATGGCTCAGAGCACTGTGAACAGGAGGTGACATACTACTGCAG
AAGATCCCACCTGCTTAAAACACCAGATGGAGCCCCATTCACCTGGTGGATTGGAAGATCCAAT
AAAAGGCACAACTACTGGGAAGGTTCTGTTCCTAGAGTTCAACAGTGCAGATGTGTCCACAAGG
AGAACTGCCTGGACATTCGATCTTTTTGCAATTGTGATGCTGACATAGGTGAATGGGCAAAAGA
AACTGGTTTTCTTTCCTTCAAAGATCATTTGCCAGTAACTCAAATAATTACTACTGATACCAAC
AGATCAAAATCAGAAGCTGCTTGGAAAATTGGCCCCTTACGTTGCTATGGTGACCGACATTTCT
GGAATGCTGTCTCATTTACTACTGAAGCTTCTTACCTCTACTTTCCTACATTCCATGCGGAATT
CAGCGCTGATATTTCCTTCTTTTTTAAGACCACTGCTTTATCTGGAGTATTTCTAGAAAACCTT
GGCATTAAAGACTTCCTCCGACTTGAAATGAGCTCTCCTTCTGAGATCACATTCACCATTGATG
TTGGGAATGGCCCTGTGGAGCTCCTCATACAGTCTCCTTATCCTCTGAATGACAATCAATGGCA
TTATATCCGGGCTGAGAGAAACCTCAAGGAGACCTCCCTTCAGGTGGACAACCTTCCACAGAGC
ATGAGAGAGGCCTCAGAGGAAGCCTATTTCCGACTTCATTTGACTAGCCAGTTGTTTGTAGGAG
GAACATCATCAAGACAGAAAGGCTTTCTTGGATGCATGCGCTCTTTACACTTGAATGGGCAGAA
CACAGACCTGATAGAGAGGGCAAAGTTAATGTCTGGAGTCACACCTGGCTGTCTAGGTCACTGC
AGTAGCTACGGCAGCAACTGCCTCAATGGGGGCAAGTGTGTGGAGAAACAAAGTGGCTATTCCT
GTGACTGCACCAACTCACCAAATGAAGGACCTTTCTGCCAGAAAGAAATTTCAGCTCTTTTTAA
TTCTGGCACCTCTGTAACATACCTGTTTCAAGAACCTTACCTGGTGATCAAGAACACAAGTCTC
TTATCTTCACCTATCTACGCAGATACTGCTCCATCCAAGGAAACCATCATGCTGAATTTCTTGA
CAACACAAGCCCCCACCATCTTGCTCTACCTCAATTTCTCTTCTCAGAACTTTCTGGCTATCTT
GCTTTCCAGAAATGGAAGTTTACAGATATGCTTTCGACTAAGCAAAATAGAAAGTCATGTGTAC
ACCATGAACACAGAGAATCTGGCAAATGGAAGAGTGCACCAGGTGAAGATTAACAAAGACGGAC
CAGAACTTTCCATTCAGATGGACCAGCAACTCTTCACCTATAACTTCTCCCCAAAAGTTGAATT
CTGGACACTGAAGTCACTTGTTCTAGGCAAAGTCACAGAGACTCTTGGGTTGGACCCAGAAGTT
GCTAAAGTAAACATCTTGGGTTTTGTTGGATGCCTTTCTTCAGTCCAGTACAATCACATAGCAC
CATTGAAAGCAGCCCTCCGCCATTCTGGCATTGCACCTGTGACTGTTCAAGGGACCTTGACTGA
ATCCGGATGTGACTCCACTCTAGACTCTGATGTGAATGCAGTGACCACTGTGCATTCTTCATTA
GATCCCATTGGAAAGAGAGATGAGCGTGAACCACTCACAGACACTGTCCAAAGTGACTCAGCAG
TCATTGGAGGTATCATAGCATTGGTGACATTTGTCACTTTTTGTGTAATTGGAATCATGATCCA
CTTCCTGTATTTGCATAAGCAGTCACACTGCACCAATCAGACGAAGGAGAAGGAATACTCAGAG
AACTTAAGCAATTCATTCAGAAATGCCATTGACTTGCAAAACACAGCCAGCGAGTGCAAACGGG
AATACTTTATCTGA

hide sequence

RefSeq Acc Id:

NM_001415869 ⟹ NP_001402798

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	3,521,427 - 4,553,884 (+)	NCBI
mRatBN7.2	13	3,513,791 - 4,546,285 (+)	NCBI

RefSeq Acc Id:

XM_039090654 ⟹ XP_038946582

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	3,521,265 - 4,370,667 (+)	NCBI
mRatBN7.2	13	3,513,615 - 4,372,179 (+)	NCBI

RefSeq Acc Id:

XM_063272211 ⟹ XP_063128281

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	3,735,760 - 4,553,547 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001041331	(Get FASTA)	NCBI Sequence Viewer
	NP_001402798	(Get FASTA)	NCBI Sequence Viewer
	XP_038946582	(Get FASTA)	NCBI Sequence Viewer
	XP_063128281	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAJ55733	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000044394.5
	ENSRNOP00000062287.4
GenBank Protein	Q0V8T3	(Get FASTA)	NCBI Sequence Viewer
	Q0V8T4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001041331 ⟸ NM_001047866
- Peptide Label:	isoform 1 precursor
- UniProtKB:	Q0V8T3 (UniProtKB/Swiss-Prot), F1LMS4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSVRRLNSILTLVLSGLWHLGLTATNYNCDEPLASFLSPLAFFSSSDLNGRFSPPQLNWRIGS GGWSPAVSNAHQWLQIDLGNRVEITAVATQGRYGSTDWVTSYRLMFSDTGHNWQQYKQKDSIWT FVGNTNADGVVYHKLLHSMRARFVRFVPLEWNSNGKIGMRVEVYGCSYKSDIVGFDGQSTLLYR FNQKTMSTLKDVISLKFKSMQGDGVLFHGEGQRGDHITLELQKGRLALYLNIDGSKARLSIIAP LAILGSLLDDQHWHSVLLERVGKQANFTVDRNTQHFQIKGETDALDIDYELSFGGIPVPSKPGT FLKKNFHGCIENVYYNGVNIIDLAKRRKHQIYSGNVTFSCSEPEIVPITFVNSRSSYLLLPGIP QIHGLSVSFHFRTWNEDGLLLSTELSEGSGTLLLILDGGSLRLLIKKVARHGTEIITGSSLNDG LWHSVSINARRNRVTLTLDNDAASPALDTSQLQIYSGNSYYFGGCPDNLTDSQCLNPIKAFQGC MRLIFIDNQPKDLISVQQGSMGNFSDLHIDLCSIKDRCLPNYCEHGGHCAQNWTTFYCNCSDTG YTGATCHDSVYEQSCEVYRHKGHTAGFFYVDSDGSGPLGPLQVYCNITEDKIWMTVQHNNTELT WVQISNAEKAYAMTFNYGGSMEQLEALIDGSEHCEQEVTYYCRRSHLLKTPDGAPFTWWIGRSN KRHNYWEGSVPRVQQCRCVHKENCLDIRSFCNCDADIGEWAKETGFLSFKDHLPVTQIITTDTN RSKSEAAWKIGPLRCYGDRHFWNAVSFTTEASYLYFPTFHAEFSADISFFFKTTALSGVFLENL GIKDFLRLEMSSPSEITFTIDVGNGPVELLIQSPYPLNDNQWHYIRAERNLKETSLQVDNLPQS MREASEEAYFRLHLTSQLFVGGTSSRQKGFLGCMRSLHLNGQNTDLIERAKLMSGVTPGCLGHC SSYGSNCLNGGKCVEKQSGYSCDCTNSPNEGPFCQKEISALFNSGTSVTYLFQEPYLVIKNTSL LSSPIYADTAPSKETIMLNFLTTQAPTILLYLNFSSQNFLAILLSRNGSLQICFRLSKIESHVY TMNTENLANGRVHQVKINKDGPELSIQMDQQLFTYNFSPKVEFWTLKSLVLGKVTETLGLDPEV AKVNILGFVGCLSSVQYNHIAPLKAALRHSGIAPVTVQGTLTESGCDSTLDSDVNAVTTVHSSL DPIGKRDEREPLTDTVQSDSAVIGGIIALVTFVTFCVIGIMIHFLYLHKQSHCTNQTKEKEYSE NLSNSFRNAIDLQNTASECKREYFI hide sequence

Ensembl Acc Id:

ENSRNOP00000062287 ⟸ ENSRNOT00000067198

Ensembl Acc Id:

ENSRNOP00000076029 ⟸ ENSRNOT00000092965

RefSeq Acc Id:	XP_038946582 ⟸ XM_039090654
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000044394 ⟸ ENSRNOT00000046060

RefSeq Acc Id:	NP_001402798 ⟸ NM_001415869
- Peptide Label:	isoform 2 precursor
- UniProtKB:	A0A8L2QLT5 (UniProtKB/TrEMBL), F1LMS4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128281 ⟸ XM_063272211
- Peptide Label:	isoform X1
- UniProtKB:	F1LMS4 (UniProtKB/TrEMBL)

Protein Domains

EGF-like F5/8 type C Fibrinogen C-terminal Laminin G Laminin G-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LMS4-F1-model_v2	AlphaFold	F1LMS4	1-1279	view protein structure
AF-Q0V8T3-F1-model_v2	AlphaFold	Q0V8T3	1-1305	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566343	AgrOrtholog
BioCyc Gene	G2FUF-18732	BioCyc
Ensembl Genes	ENSRNOG00000029556	Ensembl, UniProtKB/TrEMBL
	ENSRNOG00000043185	Ensembl
Ensembl Transcript	ENSRNOT00000046060.5	UniProtKB/TrEMBL
	ENSRNOT00000067198.4	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.1000	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.60.120.200	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Galactose-binding domain-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Laminin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	ConA-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EGF-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FA58C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fibrinogen-like_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fibrinogen_a/b/g_C_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Galactose-bd-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Laminin_G	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Neurexin-related_CASP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:297846	UniProtKB/Swiss-Prot
NCBI Gene	297846	ENTREZGENE
PANTHER	CONTACTIN-ASSOCIATED PROTEIN-LIKE 5	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PIKACHURIN-LIKE PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	F5_F8_type_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Laminin_G_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cntnap5c	PhenoGen
PROSITE	EGF_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FA58C_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FA58C_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FA58C_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FIBRINOGEN_C_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LAM_G_DOMAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000029556	RatGTEx
	ENSRNOG00000043185	RatGTEx
SMART	EGF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FA58C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LamG	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	EGF/Laminin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF49785	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF49899	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF56496	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8L2QLT5	ENTREZGENE, UniProtKB/TrEMBL
	CTP5D_RAT	UniProtKB/Swiss-Prot
	F1LMS4	ENTREZGENE, UniProtKB/TrEMBL
	Q0V8T3	ENTREZGENE
	Q0V8T4	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-07-16	Cntnap5c	contactin associated protein-like 5C	Cntnap5	contactin associated protein-like 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-05-05	Cntnap5	contactin associated protein-like 5	RGD1566343	similar to contactin associated protein-like 5 isoform 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-30	RGD1566343	similar to contactin associated protein-like 5 isoform 1	Cntnap5b	contactin associated protein-like 5B	Symbol and Name updated	1299863	APPROVED
2008-09-30	Cntnap5b	contactin associated protein-like 5B	RGD1566343	similar to contactin associated protein-like 5 isoform 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1566343	similar to contactin associated protein-like 5 isoform 1	RGD1566343_predicted	similar to contactin associated protein-like 5 isoform 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1566343_predicted	similar to contactin associated protein-like 5 isoform 1 (predicted)	LOC297846	similar to contactin associated protein-like 5 isoform 1	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC297846	similar to contactin associated protein-like 5 isoform 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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