Ptpn4 (protein tyrosine phosphatase, non-receptor type 4) - Rat Genome Database

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Gene: Ptpn4 (protein tyrosine phosphatase, non-receptor type 4) Rattus norvegicus
Analyze
Symbol: Ptpn4
Name: protein tyrosine phosphatase, non-receptor type 4
RGD ID: 620712
Description: Predicted to enable glutamate receptor binding activity and non-membrane spanning protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within peptidyl-tyrosine phosphorylation. Predicted to be located in membrane. Predicted to be active in cytoplasm and cytoplasmic side of plasma membrane. Orthologous to human PTPN4 (protein tyrosine phosphatase non-receptor type 4); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC360836; tyrosine-protein phosphatase non-receptor type 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21330,772,012 - 30,952,340 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1330,776,682 - 30,952,170 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1333,353,328 - 33,533,288 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01334,641,168 - 34,821,122 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01331,915,258 - 32,095,209 (-)NCBIRnor_WKY
Rnor_6.01335,678,240 - 35,858,414 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1335,678,240 - 35,858,390 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01340,792,728 - 40,972,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41332,430,875 - 32,611,163 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11332,475,262 - 32,484,043 (-)NCBI
Celera1330,666,333 - 30,846,454 (-)NCBICelera
Cytogenetic Map13q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The properties of the protein tyrosine phosphatase PTPMEG. Gu M and Majerus PW, J Biol Chem 1996 Nov 1;271(44):27751-9.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Councils of Nursing Assistants (N.A.C's) Paradis R Infirm Aux 1992 Dec;65(2):1-3.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10940933   PMID:11054567   PMID:12218363   PMID:31178952  


Genomics

Comparative Map Data
Ptpn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21330,772,012 - 30,952,340 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1330,776,682 - 30,952,170 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1333,353,328 - 33,533,288 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01334,641,168 - 34,821,122 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01331,915,258 - 32,095,209 (-)NCBIRnor_WKY
Rnor_6.01335,678,240 - 35,858,414 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1335,678,240 - 35,858,390 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01340,792,728 - 40,972,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41332,430,875 - 32,611,163 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11332,475,262 - 32,484,043 (-)NCBI
Celera1330,666,333 - 30,846,454 (-)NCBICelera
Cytogenetic Map13q11NCBI
PTPN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382119,759,922 - 119,984,899 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2119,759,922 - 119,984,899 (+)EnsemblGRCh38hg38GRCh38
GRCh372120,517,498 - 120,742,475 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362120,233,677 - 120,451,507 (+)NCBINCBI36Build 36hg18NCBI36
Build 342120,233,436 - 120,451,267NCBI
Celera2113,842,942 - 114,061,903 (+)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2112,841,586 - 113,066,878 (+)NCBIHuRef
CHM1_12120,520,785 - 120,746,914 (+)NCBICHM1_1
T2T-CHM13v2.02120,193,967 - 120,419,641 (+)NCBIT2T-CHM13v2.0
Ptpn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391119,580,197 - 119,765,281 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1119,580,197 - 119,765,343 (-)EnsemblGRCm39 Ensembl
GRCm381119,652,467 - 119,837,585 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1119,652,467 - 119,837,613 (-)EnsemblGRCm38mm10GRCm38
MGSCv371121,554,669 - 121,733,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,487,291 - 121,630,021 (-)NCBIMGSCv36mm8
Celera1122,316,986 - 122,496,376 (-)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.39NCBI
Ptpn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554599,803,421 - 9,981,392 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554599,803,421 - 9,981,392 (-)NCBIChiLan1.0ChiLan1.0
PTPN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B120,320,591 - 120,492,423 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B120,320,610 - 120,485,676 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B6,694,192 - 6,917,265 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PTPN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11930,079,221 - 30,285,126 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1930,086,832 - 30,241,064 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1930,335,314 - 30,541,476 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01931,454,630 - 31,662,707 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1931,461,882 - 31,663,169 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11930,140,713 - 30,349,797 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01930,310,819 - 30,517,448 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01931,493,639 - 31,702,636 (-)NCBIUU_Cfam_GSD_1.0
Ptpn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530390,976,332 - 91,149,472 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646950,470,256 - 50,594,357 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493646950,463,473 - 50,641,419 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1531,307,447 - 31,502,923 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11531,305,394 - 31,502,978 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21536,235,035 - 36,459,764 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTPN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11010,325,263 - 10,554,381 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1010,328,766 - 10,554,258 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606112,136,097 - 12,365,467 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptpn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473225,108,192 - 25,278,948 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473225,099,327 - 25,301,610 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ptpn4
588 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:919
Count of miRNA genes:335
Interacting mature miRNAs:447
Transcripts:ENSRNOT00000003568
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13599466834535351Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131176653532331607Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131176653532331607Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133039535141184251Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat

Markers in Region
D13Mco4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21330,807,767 - 30,808,001 (+)MAPPERmRatBN7.2
Rnor_6.01335,713,956 - 35,714,189NCBIRnor6.0
Rnor_5.01340,828,673 - 40,828,906UniSTSRnor5.0
RGSC_v3.41332,466,682 - 32,466,916RGDRGSC3.4
RGSC_v3.41332,466,683 - 32,466,916UniSTSRGSC3.4
RGSC_v3.11332,469,506 - 32,469,740RGD
Celera1330,702,088 - 30,702,321UniSTS
Cytogenetic Map13q11UniSTS
BE199656  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21330,772,177 - 30,772,293 (+)MAPPERmRatBN7.2
Rnor_6.01335,678,406 - 35,678,521NCBIRnor6.0
Rnor_5.01340,792,894 - 40,793,009UniSTSRnor5.0
RGSC_v3.41332,431,041 - 32,431,156UniSTSRGSC3.4
Celera1330,666,499 - 30,666,614UniSTS
Cytogenetic Map13q11UniSTS
RH131441  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21330,772,557 - 30,772,749 (+)MAPPERmRatBN7.2
Rnor_6.01335,678,799 - 35,678,990NCBIRnor6.0
Rnor_5.01340,793,287 - 40,793,478UniSTSRnor5.0
RGSC_v3.41332,431,421 - 32,431,612UniSTSRGSC3.4
Celera1330,666,879 - 30,667,070UniSTS
Cytogenetic Map13q11UniSTS
RH143699  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21330,951,974 - 30,952,114 (+)MAPPERmRatBN7.2
Rnor_6.01335,858,195 - 35,858,334NCBIRnor6.0
Rnor_5.01340,972,589 - 40,972,728UniSTSRnor5.0
RGSC_v3.41332,610,968 - 32,611,107UniSTSRGSC3.4
Celera1330,846,259 - 30,846,398UniSTS
Cytogenetic Map13q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 16 16 8 8 74 28 31 8 8
Low 3 37 41 41 3 41 2 7 10 3
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000003568   ⟹   ENSRNOP00000003568
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1330,776,682 - 30,952,170 (-)Ensembl
Rnor_6.0 Ensembl1335,678,240 - 35,858,390 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095537   ⟹   ENSRNOP00000088009
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1330,776,682 - 30,952,170 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107559   ⟹   ENSRNOP00000076958
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1330,882,844 - 30,952,170 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108019   ⟹   ENSRNOP00000079705
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1330,810,358 - 30,952,170 (-)Ensembl
RefSeq Acc Id: NM_001100479   ⟹   NP_001093949
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21330,772,012 - 30,952,170 (-)NCBI
Rnor_6.01335,678,240 - 35,858,390 (-)NCBI
Rnor_5.01340,792,728 - 40,972,784 (-)NCBI
RGSC_v3.41332,430,875 - 32,611,163 (-)RGD
Celera1330,666,333 - 30,846,454 (-)RGD
Sequence:
RefSeq Acc Id: XM_017598666   ⟹   XP_017454155
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21330,772,012 - 30,952,336 (-)NCBI
Rnor_6.01335,678,783 - 35,858,413 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598667   ⟹   XP_017454156
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21330,772,012 - 30,952,340 (-)NCBI
Rnor_6.01335,678,783 - 35,858,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039090322   ⟹   XP_038946250
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21330,772,012 - 30,952,337 (-)NCBI
RefSeq Acc Id: XM_039090323   ⟹   XP_038946251
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21330,772,012 - 30,952,335 (-)NCBI
RefSeq Acc Id: XM_039090325   ⟹   XP_038946253
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21330,785,926 - 30,952,338 (-)NCBI
RefSeq Acc Id: XM_039090326   ⟹   XP_038946254
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21330,772,012 - 30,952,337 (-)NCBI
RefSeq Acc Id: XM_039090327   ⟹   XP_038946255
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21330,772,012 - 30,952,337 (-)NCBI
RefSeq Acc Id: XM_039090328   ⟹   XP_038946256
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21330,772,012 - 30,876,638 (-)NCBI
RefSeq Acc Id: XM_039090329   ⟹   XP_038946257
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21330,772,012 - 30,876,788 (-)NCBI
RefSeq Acc Id: XM_039090330   ⟹   XP_038946258
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21330,772,012 - 30,876,636 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001093949   ⟸   NM_001100479
- UniProtKB: G3V6B9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454156   ⟸   XM_017598667
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017454155   ⟸   XM_017598666
- Peptide Label: isoform X1
- UniProtKB: G3V6B9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000003568   ⟸   ENSRNOT00000003568
RefSeq Acc Id: XP_038946255   ⟸   XM_039090327
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038946254   ⟸   XM_039090326
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038946250   ⟸   XM_039090322
- Peptide Label: isoform X1
- UniProtKB: G3V6B9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946251   ⟸   XM_039090323
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038946257   ⟸   XM_039090329
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038946256   ⟸   XM_039090328
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038946258   ⟸   XM_039090330
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038946253   ⟸   XM_039090325
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000088009   ⟸   ENSRNOT00000095537
RefSeq Acc Id: ENSRNOP00000079705   ⟸   ENSRNOT00000108019
RefSeq Acc Id: ENSRNOP00000076958   ⟸   ENSRNOT00000107559
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V6B9-F1-model_v2 AlphaFold G3V6B9 1-926 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698764
Promoter ID:EPDNEW_R9288
Type:multiple initiation site
Name:Ptpn4_1
Description:protein tyrosine phosphatase, non-receptor type 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01335,858,402 - 35,858,462EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620712 AgrOrtholog
BioCyc Gene G2FUF-18518 BioCyc
Ensembl Genes ENSRNOG00000002625 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000003568 ENTREZGENE
  ENSRNOP00000003568.6 UniProtKB/TrEMBL
  ENSRNOP00000076958.1 UniProtKB/TrEMBL
  ENSRNOP00000079705.1 UniProtKB/TrEMBL
  ENSRNOP00000088009 ENTREZGENE
  ENSRNOP00000088009.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003568 ENTREZGENE
  ENSRNOT00000003568.8 UniProtKB/TrEMBL
  ENSRNOT00000095537 ENTREZGENE
  ENSRNOT00000095537.1 UniProtKB/TrEMBL
  ENSRNOT00000107559.1 UniProtKB/TrEMBL
  ENSRNOT00000108019.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/TrEMBL
InterPro Band_41_domain UniProtKB/TrEMBL
  Ez/rad/moesin-like UniProtKB/TrEMBL
  FERM-adjacent UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_3-hlx UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_CS UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTPN3/4_FERM_C UniProtKB/TrEMBL
  Tyr/Dual-sp_Pase UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_non-rcpt_typ-3/4 UniProtKB/TrEMBL
  Tyr_Pase_rcpt/non-rcpt UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
KEGG Report rno:246116 UniProtKB/TrEMBL
NCBI Gene 246116 ENTREZGENE
Pfam FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PF08736 UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/TrEMBL
PhenoGen Ptpn4 PhenoGen
PIRSF Tyr-Ptase_nr3 UniProtKB/TrEMBL
PRINTS BAND41 UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/TrEMBL
  PRTYPHPHTASE UniProtKB/TrEMBL
PROSITE FERM_1 UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_3 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/TrEMBL
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PTPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
  SM01195 UniProtKB/TrEMBL
Superfamily-SCOP FERM_3-hlx UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A8I5ZJC3_RAT UniProtKB/TrEMBL
  A0A8I5ZNX5_RAT UniProtKB/TrEMBL
  A0A8I6A599_RAT UniProtKB/TrEMBL
  G3V6B9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-28 Ptpn4  protein tyrosine phosphatase, non-receptor type 4  Ptpn4_predicted  protein tyrosine phosphatase, non-receptor type 4 (predicted)  Data Merged 737654 APPROVED
2005-01-20 Ptpn4  protein tyrosine phosphatase, non-receptor type 4      Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Ptpn4_predicted  protein tyrosine phosphatase, non-receptor type 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED
2002-08-07 Ptpn4  protein tyrosine phosphatase, non-receptor type 4      Symbol and Name status set to provisional 70820 PROVISIONAL