Clasp1 (cytoplasmic linker associated protein 1) - Rat Genome Database

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Gene: Clasp1 (cytoplasmic linker associated protein 1) Chinchilla lanigera
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Symbol: Clasp1
Name: cytoplasmic linker associated protein 1
RGD ID: 8972409
Description: ENCODES a protein that exhibits dystroglycan binding (ortholog); kinetochore binding (ortholog); microtubule binding (ortholog); INVOLVED IN astral microtubule organization (ortholog); cell division (ortholog); establishment of mitotic spindle localization (ortholog); ASSOCIATED WITH Cough (ortholog); Dwarfism (ortholog); Lowry Wood Syndrome (ortholog); FOUND IN basal cortex (ortholog); cell cortex (ortholog); centrosomal corona (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: CLIP-associating protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554598,408,160 - 8,629,344 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554598,382,671 - 8,628,048 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Clasp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554598,408,160 - 8,629,344 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554598,382,671 - 8,628,048 (+)NCBIChiLan1.0ChiLan1.0
CLASP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2121,337,776 - 121,649,476 (-)EnsemblGRCh38hg38GRCh38
GRCh382121,337,776 - 121,649,462 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372122,095,352 - 122,407,038 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362121,811,825 - 122,123,522 (-)NCBINCBI36hg18NCBI36
Build 342121,811,584 - 122,123,282NCBI
Celera2115,420,003 - 115,731,696 (-)NCBI
Cytogenetic Map2q14.2-q14.3NCBI
HuRef2114,418,654 - 114,729,805 (-)NCBIHuRef
CHM1_12122,098,869 - 122,410,596 (-)NCBICHM1_1
Clasp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,314,976 - 118,537,192 (+)NCBIGRCm39mm39
GRCm39 Ensembl1118,316,788 - 118,540,408 (+)Ensembl
GRCm381118,389,058 - 118,609,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,389,058 - 118,612,678 (+)EnsemblGRCm38mm10GRCm38
MGSCv371120,285,635 - 120,506,039 (+)NCBIGRCm37mm9NCBIm37
MGSCv361120,216,604 - 120,437,008 (+)NCBImm8
Celera1121,052,069 - 121,271,357 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
Clasp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21329,493,554 - 29,715,151 (+)NCBI
Rnor_6.0 Ensembl1334,365,147 - 34,584,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01334,365,038 - 34,584,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01339,495,368 - 39,713,144 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41331,046,104 - 31,269,294 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11331,048,529 - 31,269,668 (+)NCBI
Celera1329,397,118 - 29,618,675 (+)NCBICelera
Cytogenetic Map13q11NCBI
CLASP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B121,837,413 - 122,103,078 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B121,840,484 - 122,102,793 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B8,265,626 - 8,574,282 (-)NCBIMhudiblu_PPA_v0panPan3
CLASP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11928,563,189 - 28,830,503 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1928,595,040 - 28,827,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1928,820,622 - 29,087,718 (+)NCBI
ROS_Cfam_1.01929,940,526 - 30,204,845 (+)NCBI
UMICH_Zoey_3.11928,626,435 - 28,893,769 (+)NCBI
UNSW_CanFamBas_1.01928,797,083 - 29,064,331 (+)NCBI
UU_Cfam_GSD_1.01929,977,506 - 30,244,752 (+)NCBI
Clasp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530392,282,508 - 92,550,374 (-)NCBI
SpeTri2.0NW_00493646949,067,357 - 49,335,212 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLASP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1529,782,604 - 30,042,734 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11529,782,613 - 30,042,727 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21534,740,928 - 34,976,541 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLASP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1108,639,245 - 8,946,935 (+)NCBI
ChlSab1.1 Ensembl108,639,196 - 8,946,968 (+)Ensembl
Vero_WHO_p1.0NW_02366606113,751,761 - 14,062,819 (-)NCBI
Clasp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473223,553,876 - 23,814,565 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005397639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01048142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01048143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDI01181231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000005511   ⟹   ENSCLAP00000005414
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554598,408,160 - 8,629,344 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000005512   ⟹   ENSCLAP00000005415
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554598,408,160 - 8,629,344 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000005513   ⟹   ENSCLAP00000005416
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554598,408,445 - 8,625,147 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000005514   ⟹   ENSCLAP00000005417
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554598,408,445 - 8,625,147 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000005515   ⟹   ENSCLAP00000005418
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554598,408,445 - 8,625,147 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000005516   ⟹   ENSCLAP00000005419
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554598,408,445 - 8,625,147 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000005517   ⟹   ENSCLAP00000005420
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554598,504,400 - 8,625,147 (+)Ensembl
RefSeq Acc Id: XM_005397639   ⟹   XP_005397696
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,671 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397640   ⟹   XP_005397697
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,672 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397643   ⟹   XP_005397700
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,674 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397644   ⟹   XP_005397701
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,674 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397645   ⟹   XP_005397702
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,674 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397646   ⟹   XP_005397703
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,912 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521069   ⟹   XP_013376523
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,672 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521070   ⟹   XP_013376524
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,672 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521071   ⟹   XP_013376525
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,672 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521072   ⟹   XP_013376526
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,673 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521073   ⟹   XP_013376527
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,672 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521074   ⟹   XP_013376528
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,671 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521075   ⟹   XP_013376529
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,671 - 8,628,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521076   ⟹   XP_013376530
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,382,672 - 8,628,048 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005397696   ⟸   XM_005397639
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005397697   ⟸   XM_005397640
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005397701   ⟸   XM_005397644
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_005397700   ⟸   XM_005397643
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005397702   ⟸   XM_005397645
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_005397703   ⟸   XM_005397646
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_013376528   ⟸   XM_013521074
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_013376529   ⟸   XM_013521075
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_013376527   ⟸   XM_013521073
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_013376524   ⟸   XM_013521070
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013376530   ⟸   XM_013521076
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_013376525   ⟸   XM_013521071
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013376523   ⟸   XM_013521069
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013376526   ⟸   XM_013521072
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSCLAP00000005420   ⟸   ENSCLAT00000005517
RefSeq Acc Id: ENSCLAP00000005419   ⟸   ENSCLAT00000005516
RefSeq Acc Id: ENSCLAP00000005418   ⟸   ENSCLAT00000005515
RefSeq Acc Id: ENSCLAP00000005417   ⟸   ENSCLAT00000005514
RefSeq Acc Id: ENSCLAP00000005416   ⟸   ENSCLAT00000005513
RefSeq Acc Id: ENSCLAP00000005415   ⟸   ENSCLAT00000005512
RefSeq Acc Id: ENSCLAP00000005414   ⟸   ENSCLAT00000005511


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003845 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000005414 ENTREZGENE
  ENSCLAP00000005415 ENTREZGENE
  ENSCLAP00000005417 ENTREZGENE
  ENSCLAP00000005418 ENTREZGENE
  ENSCLAP00000005419 ENTREZGENE
Ensembl Transcript ENSCLAT00000005511 ENTREZGENE
  ENSCLAT00000005512 ENTREZGENE
  ENSCLAT00000005514 ENTREZGENE
  ENSCLAT00000005515 ENTREZGENE
  ENSCLAT00000005516 ENTREZGENE
NCBI Gene Clasp1 ENTREZGENE