Snrpe (small nuclear ribonucleoprotein polypeptide E)

Gene: Snrpe (small nuclear ribonucleoprotein polypeptide E) Rattus norvegicus

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Symbol:

Snrpe

Name:

small nuclear ribonucleoprotein polypeptide E

Description:

ENCODES a protein that exhibits U1 snRNP binding; INVOLVED IN hair cycle (ortholog); mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH lupus nephritis; hepatocellular carcinoma (ortholog); hypogonadism (ortholog); FOUND IN nucleus; U1 snRNP; catalytic step 2 spliceosome (ortholog); INTERACTS WITH bisphenol A; gentamycin; PhIP

AGR Description:

Exhibits U1 snRNP binding activity; predicted to be involved in hair cycle and spliceosomal snRNP assembly; localizes to the U1 snRNP; used to study lupus nephritis; orthologous to human SNRPE (small nuclear ribonucleoprotein polypeptide E).

Merged Description:

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

LOC100360682; small nuclear ribonucleoprotein E

Orthologs:

Homo sapiens (human) : SNRPE (small nuclear ribonucleoprotein polypeptide E) HGNC Alliance
Mus musculus (house mouse) : Snrpe (small nuclear ribonucleoprotein E) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Snrpe (small nuclear ribonucleoprotein polypeptide E)
Pan paniscus (bonobo/pygmy chimpanzee) : SNRPE (small nuclear ribonucleoprotein polypeptide E)
Canis lupus familiaris (dog) : SNRPE (small nuclear ribonucleoprotein polypeptide E)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Snrpe (small nuclear ribonucleoprotein polypeptide E)
Sus scrofa (pig) : SNRPE (small nuclear ribonucleoprotein polypeptide E)

more info ...

Related Pseudogenes:

Snrpel

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	13	50,252,707 - 50,258,951 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	13	55,306,370 - 55,312,614 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	46,522,340 - 46,528,589 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	13	45,383,253 - 45,389,497 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

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Model

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Disease Annotations

Gene-Chemical Interaction Annotations

Gene Ontology Annotations

Molecular Pathway Annotations

References - curated

References - uncurated

RGD Disease Portals

Genomics

Comparative Map Data

Position Markers

QTLs in Region (Rnor_6.0)

miRNA Target Status

Sequence

Nucleotide Sequences

Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links

Nomenclature History

More on Snrpe
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5 rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	2321675
Created:	2010-05-06
Species:	Rattus norvegicus
Last Modified:	2019-04-12
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

Functional Annotation unavailable	Annotation Distribution unavailable	Genomic Variants unavailble for Mouse Genomic Variants unavailable
Functional Annotation	Annotation Distribution	Genomic Variants

Protein-Protein Interactions unavailable	Genome Viewer unavailable	Damaging Variants unavailble for Mouse Damaging Variants unavailable
Protein-Protein Interactions	Genome Viewer	Damaging Variants

Annotation Comparison unavailable	OLGA unavailable
Annotation Comparison	OLGA	Excel (Download)

Gene Enrichment unavailable
Gene Enrichment

RGD Manual Annotations

Imported Annotations - ClinVar

Imported Annotations - CTD

Imported Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)