 |
| Create Name: | |
| Description: |
|
| Save what matters to you |
| {{ loginError }} |
| Sign in with your RGD account |
| Create New Account | Recover Password |
Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
 |
Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
|
MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - OMIM | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Neurodevelopmental Disorder with Central and Peripheral Motor Dysfunction | ISO | RGD:733496 | 7240710 | OMIM | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsDisease Annotations
|
|
Gene-Chemical Interaction Annotations
|
|
|
Gene Ontology Annotations
|
|
|
|
|
|
|
References - curated| 1. | Charles P, etal., Curr Biol 2002 Feb 5;12(3):217-20. |
| 2. | Collinson JM, etal., Glia 1998 May;23(1):11-23. |
| 3. | Davis JQ, etal., J Cell Biol 1993 Apr;121(1):121-33. |
| 4. | Davis JQ, etal., J Cell Biol 1996 Dec;135(5):1355-67. |
| 5. | Gumy LF, etal., Neuron. 2017 Apr 19;94(2):347-362.e7. doi: 10.1016/j.neuron.2017.03.046. |
| 6. | Gunn-Moore FJ, etal., Mol Cell Neurosci. 2006 Dec;33(4):441-6. Epub 2006 Oct 12. |
| 7. | Hedstrom KL, etal., J Cell Biol. 2007 Aug 27;178(5):875-86. doi: 10.1083/jcb.200705119. Epub 2007 Aug 20. |
| 8. | Jenkins SM and Bennett V, J Cell Biol. 2001 Nov 26;155(5):739-46. Epub 2001 Nov 26. |
| 9. | Koroll M, etal., J Biol Chem 2001 Apr 6;276(14):10646-54. |
| 10. | MGD data from the GO Consortium |
| 11. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 12. | Pan Z, etal., J Neurosci. 2006 Mar 8;26(10):2599-613. |
| 13. | Ratcliffe CF, etal., J Cell Biol. 2001 Jul 23;154(2):427-34. |
| 14. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 15. | RGD automated import pipeline for gene-chemical interactions |
| 16. | Schafer DP, etal., Neuron Glia Biol. 2006 May;2(2):69-79. |
| 17. | Sohn PD, etal., Mol Neurodegener. 2016 Jun 29;11(1):47. doi: 10.1186/s13024-016-0109-0. |
| 18. | Tait S, etal., J Cell Biol 2000 Aug 7;150(3):657-66. |
| 19. | Yap CC, etal., J Neurosci. 2012 May 30;32(22):7439-53. doi: 10.1523/JNEUROSCI.5318-11.2012. |
References - uncurated| PubMed | 7961622 8889548 9151675 12223548 12975355 15479642 15691718 15797713 16039564 16337912 16566914 16701205 16723544 17234591 17634366 17846150 17936266 18048693 19185024 19666467 20188654 20371806 21423176 21576239 21700703 23376485 23971736 25511445 25653379 26511327 26671463 27583434 29404957 29476059 30850329 |
Comparative Map Data| Nfasc (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NFASC (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Nfasc (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Nfasc (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NFASC (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NFASC (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Nfasc (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NFASC (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NFASC (Chlorocebus sabaeus - African green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Nfasc (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Position Markers| D13Rat105 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| RH132614 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||
| RH144666 |
|
QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
||||||||
RNA-SEQ Expression| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 74 | ||||||||||||
| Low | 3 | 7 | 12 | 2 | 18 | 2 | 8 | 11 | 2 | 32 | 4 | 8 | |
| Below cutoff | 28 | 23 | 17 | 1 | 17 | 28 | 9 | 7 |
Nucleotide Sequences| RefSeq Transcripts | NM_001160313 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| NM_001160314 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| NM_001160315 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| NM_053909 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006249727 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006249734 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006249738 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598638 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598639 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598640 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598641 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598642 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598643 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598644 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598645 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598646 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598647 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598648 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598649 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598650 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598651 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598652 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07072325 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01075110 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01075111 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01075112 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC105703 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC134289 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AY061639 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BF410020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473958 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| L11002 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| U81035 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| U81036 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | ENSRNOT00000044972 ⟹ ENSRNOP00000044067 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
| RefSeq Acc Id: | ENSRNOT00000051512 ⟹ ENSRNOP00000049964 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
| RefSeq Acc Id: | ENSRNOT00000060871 ⟹ ENSRNOP00000057594 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
| RefSeq Acc Id: | NM_001160313 ⟹ NP_001153785 | ||||||||||||||||||||
| RefSeq Status: | REVIEWED | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
|
||||||||||||||||||||
| Sequence: |
CTGAGCACTGTCTGGAAAGCCCACGAGGAACGGCGCAAGGCATCGAGAGCCCGTGGGCTGGGCAhide sequence |
| RefSeq Acc Id: | NM_001160314 ⟹ NP_001153786 | ||||||||||||||||||||
| RefSeq Status: | REVIEWED | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
|
||||||||||||||||||||
| Sequence: |
GGCTGGCGGCGAGAGCTGCTGCAGGGGACGCGGGCGAAGTGGCGGCGCCGGGAGCAGACATCTGhide sequence |
| RefSeq Acc Id: | NM_001160315 ⟹ NP_001153787 | ||||||||||||||||||||
| RefSeq Status: | REVIEWED | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
|
||||||||||||||||||||
| Sequence: |
GAACTCTCAGAGGACATGGTGGGCTTGAGATAATAAAGCCCTGTTTATGTTACACAGGGCTGGAhide sequence |
| RefSeq Acc Id: | NM_053909 ⟹ NP_446361 | ||||||||||||||||||||
| RefSeq Status: | REVIEWED | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
|
||||||||||||||||||||
| Sequence: |
GGCTGGCGGCGAGAGCTGCTGCAGGGGACGCGGGCGAAGTGGCGGCGCCGGGAGCAGACATCTGhide sequence |
| RefSeq Acc Id: | XM_006249727 ⟹ XP_006249789 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
GTCGGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGhide sequence |
| RefSeq Acc Id: | XM_006249734 ⟹ XP_006249796 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
GGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGGCGGhide sequence |
| RefSeq Acc Id: | XM_006249738 ⟹ XP_006249800 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
CGGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGGChide sequence |
| RefSeq Acc Id: | XM_017598638 ⟹ XP_017454127 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
GTCGGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGhide sequence |
| RefSeq Acc Id: | XM_017598639 ⟹ XP_017454128 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
GTCGGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGhide sequence |
| RefSeq Acc Id: | XM_017598640 ⟹ XP_017454129 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
GTCGGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGhide sequence |
| RefSeq Acc Id: | XM_017598641 ⟹ XP_017454130 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
TCGGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGGhide sequence |
| RefSeq Acc Id: | XM_017598642 ⟹ XP_017454131 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
TCGGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGGhide sequence |
| RefSeq Acc Id: | XM_017598643 ⟹ XP_017454132 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
TCGGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGGhide sequence |
| RefSeq Acc Id: | XM_017598644 ⟹ XP_017454133 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
CGGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGGChide sequence |
| RefSeq Acc Id: | XM_017598645 ⟹ XP_017454134 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
CGGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGGChide sequence |
| RefSeq Acc Id: | XM_017598646 ⟹ XP_017454135 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
CGGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGGChide sequence |
| RefSeq Acc Id: | XM_017598647 ⟹ XP_017454136 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
GGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGGCGhide sequence |
| RefSeq Acc Id: | XM_017598648 ⟹ XP_017454137 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
CGGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGGChide sequence |
| RefSeq Acc Id: | XM_017598649 ⟹ XP_017454138 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
GGGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGGCGhide sequence |
| RefSeq Acc Id: | XM_017598650 ⟹ XP_017454139 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
GGGACGCGCTGGCCGCCCGGGGGCGCGCACGGGCTAGTCTCTGCCCTAATGCGGCGGCTGGCGGhide sequence |
| RefSeq Acc Id: | XM_017598651 ⟹ XP_017454140 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
GCCTAAGAAAGGCTAGCTTTCAGCATCAACGTGTCCCTAAGGAAGGCACCCACCAGTGGAGACThide sequence |
| RefSeq Acc Id: | XM_017598652 ⟹ XP_017454141 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
ACGCGGGCGAAGTGGCGGCGCCGGGAGCAGACATCTGGGACTGCGCCCAGGGCTGGAGCTGGAGhide sequence |
Protein Sequences| Protein RefSeqs | NP_001153785 | (Get FASTA) | NCBI Sequence Viewer |
| NP_001153786 | (Get FASTA) | NCBI Sequence Viewer | |
| NP_001153787 | (Get FASTA) | NCBI Sequence Viewer | |
| NP_446361 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006249789 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006249796 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006249800 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454127 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454128 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454129 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454130 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454131 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454132 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454133 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454134 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454135 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454136 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454137 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454138 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454139 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454140 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454141 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAB47753 | (Get FASTA) | NCBI Sequence Viewer |
| AAB47754 | (Get FASTA) | NCBI Sequence Viewer | |
| AAL27854 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM09785 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM09786 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM09787 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM09788 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM09789 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM09790 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM09791 | (Get FASTA) | NCBI Sequence Viewer | |
| P97685 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | NP_446361 ⟸ NM_053909 |
| - Peptide Label: | isoform 3 precursor |
| - UniProtKB: | P97685 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MARQQAPPWVHVALILFLLSLGGAIEIPMDLTQPPTITKQSVKDHIVDPRDNILIECEAKGNPAhide sequence |
| RefSeq Acc Id: | NP_001153786 ⟸ NM_001160314 |
| - Peptide Label: | isoform 1 precursor |
| - UniProtKB: | P97685 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MARQQAPPWVHVALILFLLSLGGAIEIPMDPSIQNELTQPPTITKQSVKDHIVDPRDNILIECEhide sequence |
| RefSeq Acc Id: | NP_001153787 ⟸ NM_001160315 |
| - Peptide Label: | isoform 4 precursor |
| - UniProtKB: | D3ZW56 (UniProtKB/TrEMBL) |
| - Sequence: |
MARQQAPPWVHVALILFLLSLGGAIEIPMDLTQPPTITKQSVKDHIVDPRDNILIECEAKGNPAhide sequence |
| RefSeq Acc Id: | NP_001153785 ⟸ NM_001160313 |
| - Peptide Label: | isoform 2 precursor |
| - UniProtKB: | P97685 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MARQQAPPWVHVALILFLLSLGGAIEIPMDLTQPPTITKQSVKDHIVDPRDNILIECEAKGNPAhide sequence |
| RefSeq Acc Id: | XP_006249789 ⟸ XM_006249727 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_006249800 ⟸ XM_006249738 |
| - Peptide Label: | isoform X14 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_006249796 ⟸ XM_006249734 |
| - Peptide Label: | isoform X9 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454128 ⟸ XM_017598639 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454129 ⟸ XM_017598640 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454127 ⟸ XM_017598638 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454131 ⟸ XM_017598642 |
| - Peptide Label: | isoform X6 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454130 ⟸ XM_017598641 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454132 ⟸ XM_017598643 |
| - Peptide Label: | isoform X7 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454137 ⟸ XM_017598648 |
| - Peptide Label: | isoform X13 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454133 ⟸ XM_017598644 |
| - Peptide Label: | isoform X8 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454135 ⟸ XM_017598646 |
| - Peptide Label: | isoform X11 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454134 ⟸ XM_017598645 |
| - Peptide Label: | isoform X10 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454138 ⟸ XM_017598649 |
| - Peptide Label: | isoform X15 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454136 ⟸ XM_017598647 |
| - Peptide Label: | isoform X12 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454139 ⟸ XM_017598650 |
| - Peptide Label: | isoform X16 |
| - Sequence: |
MRRLAARAAAGDAGEVAAPGADIWDCAQGWSWSSWRLTDLCAIWEPGVFLPSAAAVNRSRASAGhide sequence |
| RefSeq Acc Id: | XP_017454141 ⟸ XM_017598652 |
| - Peptide Label: | isoform X17 |
| - Sequence: |
MARQQAPPWVHVALILFLLSLGGAIEIPMDPSIQNELTQPPTITKQSVKDHIVDPRDNILIECEhide sequence |
| RefSeq Acc Id: | XP_017454140 ⟸ XM_017598651 |
| - Peptide Label: | isoform X17 |
| - Sequence: |
MARQQAPPWVHVALILFLLSLGGAIEIPMDPSIQNELTQPPTITKQSVKDHIVDPRDNILIECEhide sequence |
| RefSeq Acc Id: | ENSRNOP00000057594 ⟸ ENSRNOT00000060871 |
| RefSeq Acc Id: | ENSRNOP00000049964 ⟸ ENSRNOT00000051512 |
| RefSeq Acc Id: | ENSRNOP00000044067 ⟸ ENSRNOT00000044972 |
TranscriptomePromoters| RGD ID: | 13698815 | ||||||||
| Promoter ID: | EPDNEW_R9340 | ||||||||
| Type: | single initiation site | ||||||||
| Name: | Nfasc_1 | ||||||||
| Description: | neurofascin | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
|
Strain Sequence Variants (Rnor 6.0)
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
Damaging Variants| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 13 | 54446075 | 54446076 | C | T | snv | GH/OmrMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (KNAW), FHL/EurMcwi (KNAW) |
| 13 | 54451010 | 54451011 | C | T | snv | IS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU) |
| 13 | 54466521 | 54466522 | T | C | snv | NIG-III/Hok (KyushuU) |
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 13 | 49370778 | 49370779 | C | T | snv | GH/OmrMcwi (MCW), FHH/EurMcwi (MCW), FHH/EurMcwi (RGD), FHL/EurMcwi (RGD), FHL/EurMcwi (MCW) |
| 13 | 49390005 | 49390006 | T | C | snv | F344/NCrl (RGD) |
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 13 | 45486001 | 45486002 | C | T | snv | FHH/EurMcwi (MDC), FHH/EurMcwi (MCW), FHL/EurMcwi (ICL), GH/OmrMcwi (MCW), FHH/EurMcwi (ICL), FHL/EurMcwi (MCW) |
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:620911 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000030515 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000044067 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOP00000049964 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSRNOP00000057594 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| Ensembl Transcript | ENSRNOT00000044972 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOT00000051512 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSRNOT00000060871 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| Gene3D-CATH | 2.60.40.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| InterPro | FN3_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| FN3_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Ig-like_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Ig-like_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Ig-like_fold | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Ig_I-set | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Ig_sub | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Ig_sub2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Immunoglobulin | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Neurofascin/L1/NrCAM_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| NFASC | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| KEGG Report | rno:116690 | UniProtKB/Swiss-Prot |
| NCBI Gene | 116690 | ENTREZGENE |
| PANTHER | PTHR44170:SF12 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| Pfam | Bravo_FIGEY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| fn3 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| I-set | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| PF00047 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| PhenoGen | Nfasc | PhenoGen |
| PROSITE | FN3 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| IG_LIKE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| SMART | FN3 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| IGc2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| SM00409 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Superfamily-SCOP | SSF48726 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| SSF49265 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| UniGene | Rn.3048 | ENTREZGENE |
| UniProt | D3ZNW5_RAT | UniProtKB/TrEMBL |
| D3ZW56 | ENTREZGENE, UniProtKB/TrEMBL | |
| NFASC_RAT | UniProtKB/Swiss-Prot, ENTREZGENE | |
| UniProt Secondary | P97684 | UniProtKB/Swiss-Prot |
| Q91Z60 | UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2004-02-26 | Nfasc | neurofascin | Symbol and Name status set to approved | 625702 | APPROVED | ||
| 2002-08-07 | Nfasc | neurofascin | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
RGD Curation Notes| Note Type | Note | Reference |
|---|---|---|
| gene_expression | up-regulated in oligodendrocytes at the onset of myelinogenesis | 633391 |
 |
| More on Nfasc | |
|
Alliance Gene |
|
NCBI Gene |
|
Ensembl Gene |
|
|
JBrowse: rn5 rn6 |
|
NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 620911 |
| Created: | 2002-08-06 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-08-20 |
| Status: | ACTIVE |
 |
 |
 |
 |
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.
