Sox13 (SRY-box transcription factor 13) - Rat Genome Database

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Gene: Sox13 (SRY-box transcription factor 13) Rattus norvegicus
Analyze
Symbol: Sox13
Name: SRY-box transcription factor 13
RGD ID: 1309674
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in several processes, including negative regulation of canonical Wnt signaling pathway; positive regulation of cell differentiation; and spinal cord oligodendrocyte cell differentiation. Predicted to act upstream of or within regulation of gamma-delta T cell differentiation. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be active in nucleus. Orthologous to human SOX13 (SRY-box transcription factor 13); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC289026; SRY (sex determining region Y)-box 13; SRY box 13; SRY-box containing gene 13; transcription factor SOX-13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81347,383,145 - 47,427,572 (-)NCBIGRCr8
mRatBN7.21344,831,097 - 44,875,522 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1344,831,085 - 44,875,762 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1347,440,198 - 47,484,766 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01348,728,297 - 48,772,864 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,987,023 - 46,031,359 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01350,434,702 - 50,479,118 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1350,434,702 - 50,479,657 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01355,487,460 - 55,531,979 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41346,298,820 - 46,345,155 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11346,314,242 - 46,328,986 (-)NCBI
Celera1345,163,489 - 45,207,838 (-)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Congenic mapping and sequence analysis of the Renin locus. Flister MJ, etal., Hypertension. 2013 Apr;61(4):850-6. doi: 10.1161/HYPERTENSIONAHA.111.01008. Epub 2013 Mar 4.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9421502   PMID:9524265   PMID:10871192   PMID:16835393   PMID:17218525   PMID:21737317   PMID:23562159   PMID:26525805   PMID:27923061  


Genomics

Comparative Map Data
Sox13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81347,383,145 - 47,427,572 (-)NCBIGRCr8
mRatBN7.21344,831,097 - 44,875,522 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1344,831,085 - 44,875,762 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1347,440,198 - 47,484,766 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01348,728,297 - 48,772,864 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,987,023 - 46,031,359 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01350,434,702 - 50,479,118 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1350,434,702 - 50,479,657 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01355,487,460 - 55,531,979 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41346,298,820 - 46,345,155 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11346,314,242 - 46,328,986 (-)NCBI
Celera1345,163,489 - 45,207,838 (-)NCBICelera
Cytogenetic Map13q13NCBI
SOX13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381204,073,115 - 204,127,743 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1204,073,115 - 204,127,743 (+)EnsemblGRCh38hg38GRCh38
GRCh371204,042,243 - 204,096,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361202,308,869 - 202,363,494 (+)NCBINCBI36Build 36hg18NCBI36
Build 341200,773,902 - 200,828,526NCBI
Celera1177,177,489 - 177,232,113 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1175,207,788 - 175,262,190 (+)NCBIHuRef
CHM1_11205,465,911 - 205,520,530 (+)NCBICHM1_1
T2T-CHM13v2.01203,337,265 - 203,391,900 (+)NCBIT2T-CHM13v2.0
Sox13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,310,038 - 133,352,159 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,310,041 - 133,352,115 (-)EnsemblGRCm39 Ensembl
GRCm381133,382,300 - 133,424,459 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,382,303 - 133,424,377 (-)EnsemblGRCm38mm10GRCm38
MGSCv371135,278,877 - 135,320,789 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361135,209,849 - 135,220,764 (-)NCBIMGSCv36mm8
Celera1135,994,724 - 136,036,968 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.91NCBI
Sox13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,966,055 - 39,994,214 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,959,458 - 39,994,214 (+)NCBIChiLan1.0ChiLan1.0
SOX13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2145,248,731 - 45,303,911 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1145,214,012 - 45,269,597 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01179,675,017 - 179,730,628 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11183,963,390 - 184,018,111 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,003,907 - 184,016,504 (+)Ensemblpanpan1.1panPan2
SOX13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.138702,974 - 721,340 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl38523,481 - 720,195 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha38798,529 - 815,690 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.038705,300 - 716,303 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl38519,330 - 717,371 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.138701,321 - 712,098 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0381,092,743 - 1,103,513 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0381,286,221 - 1,304,778 (+)NCBIUU_Cfam_GSD_1.0
Sox13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934471,396,509 - 71,441,482 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936567630,855 - 642,017 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936567631,126 - 641,967 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOX13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl964,731,969 - 64,780,942 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1964,745,762 - 64,780,942 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2971,086,586 - 71,142,049 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SOX13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12525,220,341 - 25,275,981 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2525,221,945 - 25,235,449 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605525,980,881 - 26,036,324 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sox13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248076,848,218 - 6,888,467 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248076,848,218 - 6,887,666 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sox13
262 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:543
Count of miRNA genes:247
Interacting mature miRNAs:295
Transcripts:ENSRNOT00000032244
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133466346187525369Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
12879436Bp395Blood pressure QTL 395arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134463918245700190Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134372077062022792Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
2303032Bp328Blood pressure QTL 328arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134118402245417941Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134343790447841255Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat

Markers in Region
BE108977  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21344,849,741 - 44,849,897 (-)MAPPERmRatBN7.2
Rnor_6.01350,460,322 - 50,460,477NCBIRnor6.0
Rnor_5.01355,513,181 - 55,513,336UniSTSRnor5.0
RGSC_v3.41346,319,379 - 46,319,534UniSTSRGSC3.4
Celera1345,182,066 - 45,182,221UniSTS
RH 3.4 Map13181.0UniSTS
Cytogenetic Map13q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000032244   ⟹   ENSRNOP00000030216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1344,831,097 - 44,875,762 (-)Ensembl
Rnor_6.0 Ensembl1350,434,702 - 50,479,118 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076857   ⟹   ENSRNOP00000068223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1344,831,085 - 44,875,286 (-)Ensembl
Rnor_6.0 Ensembl1350,434,886 - 50,479,657 (+)Ensembl
RefSeq Acc Id: NM_001105952   ⟹   NP_001099422
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,383,145 - 47,427,572 (-)NCBI
mRatBN7.21344,831,097 - 44,875,522 (-)NCBI
Rnor_6.01350,434,702 - 50,479,118 (+)NCBI
Rnor_5.01355,487,460 - 55,531,979 (+)NCBI
RGSC_v3.41346,298,820 - 46,345,155 (-)RGD
Celera1345,163,489 - 45,207,838 (-)RGD
Sequence:
RefSeq Acc Id: XM_006249762   ⟹   XP_006249824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,383,146 - 47,427,370 (-)NCBI
mRatBN7.21344,831,098 - 44,875,310 (-)NCBI
Rnor_6.01350,434,965 - 50,479,114 (+)NCBI
Rnor_5.01355,487,460 - 55,531,979 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090434   ⟹   XP_038946362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,383,146 - 47,426,996 (-)NCBI
mRatBN7.21344,831,098 - 44,874,677 (-)NCBI
RefSeq Acc Id: XM_063272077   ⟹   XP_063128147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,383,146 - 47,415,744 (-)NCBI
RefSeq Acc Id: XM_063272078   ⟹   XP_063128148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,383,146 - 47,415,744 (-)NCBI
RefSeq Acc Id: XM_063272079   ⟹   XP_063128149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,383,146 - 47,426,977 (-)NCBI
RefSeq Acc Id: NP_001099422   ⟸   NM_001105952
- UniProtKB: A6IC79 (UniProtKB/TrEMBL),   A6IC80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249824   ⟸   XM_006249762
- Peptide Label: isoform X3
- UniProtKB: D4A8S0 (UniProtKB/TrEMBL),   A6IC80 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000030216   ⟸   ENSRNOT00000032244
Ensembl Acc Id: ENSRNOP00000068223   ⟸   ENSRNOT00000076857
RefSeq Acc Id: XP_038946362   ⟸   XM_039090434
- Peptide Label: isoform X3
- UniProtKB: D4A8S0 (UniProtKB/TrEMBL),   A6IC80 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128149   ⟸   XM_063272079
- Peptide Label: isoform X4
- UniProtKB: A6IC79 (UniProtKB/TrEMBL),   A6IC80 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128148   ⟸   XM_063272078
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063128147   ⟸   XM_063272077
- Peptide Label: isoform X1
Protein Domains
HMG box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A8S0-F1-model_v2 AlphaFold D4A8S0 1-612 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698827
Promoter ID:EPDNEW_R9347
Type:single initiation site
Name:Sox13_1
Description:SRY box 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01350,434,894 - 50,434,954EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309674 AgrOrtholog
BioCyc Gene G2FUF-18284 BioCyc
Ensembl Genes ENSRNOG00000028353 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032244.8 UniProtKB/TrEMBL
  ENSRNOT00000076857.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
InterPro HMG_box_dom_sf UniProtKB/TrEMBL
  HMG_superfamily UniProtKB/TrEMBL
  SOX/SOX-like_TF UniProtKB/TrEMBL
KEGG Report rno:289026 UniProtKB/TrEMBL
NCBI Gene 289026 ENTREZGENE
PANTHER FI18025P1 UniProtKB/TrEMBL
  PTHR45789:SF4 UniProtKB/TrEMBL
Pfam HMG_box UniProtKB/TrEMBL
PhenoGen Sox13 PhenoGen
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000028353 RatGTEx
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP HMG-box UniProtKB/TrEMBL
UniProt A0A096MJQ6_RAT UniProtKB/TrEMBL
  A6IC79 ENTREZGENE, UniProtKB/TrEMBL
  A6IC80 ENTREZGENE, UniProtKB/TrEMBL
  D4A8S0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-05 Sox13  SRY-box transcription factor 13  Sox13  SRY box 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-12 Sox13  SRY box 13  Sox13  SRY (sex determining region Y)-box 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Sox13  SRY (sex determining region Y)-box 13  Sox13  SRY-box containing gene 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Sox13  SRY-box containing gene 13  Sox13_predicted  SRY (sex determining region Y)-box 13 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Sox13_predicted  SRY (sex determining region Y)-box 13 (predicted)      Symbol and Name status set to approved 70820 APPROVED