Srgap2 (SLIT-ROBO Rho GTPase activating protein 2)

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Gene: Srgap2 (SLIT-ROBO Rho GTPase activating protein 2) Rattus norvegicus

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Symbol:

Srgap2

Name:

SLIT-ROBO Rho GTPase activating protein 2

RGD ID:

1566016

Description:

Predicted to enable GTPase activator activity; protein homodimerization activity; and small GTPase binding activity. Predicted to be involved in several processes, including plasma membrane bounded cell projection organization; substrate adhesion-dependent cell spreading; and synapse assembly. Located in cytoplasm and nucleus. Orthologous to several human genes including SRGAP2 (SLIT-ROBO Rho GTPase activating protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC360840; MGC188551; RGD1566016; similar to KIAA0456 protein; SLIT-ROBO Rho GTPase-activating protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	45,298,192 - 45,519,330 (-)	NCBI		GRCr8
mRatBN7.2	13	42,745,956 - 42,967,091 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	42,745,947 - 42,967,058 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	45,354,029 - 45,577,291 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	46,642,156 - 46,865,413 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	43,905,845 - 44,129,315 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	48,065,280 - 48,286,888 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	48,068,158 - 48,286,720 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	53,141,198 - 53,362,657 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	44,239,946 - 44,452,446 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	43,100,229 - 43,312,451 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

familial adult myoclonic epilepsy 5 (ISO)

gastrointestinal stromal tumor (ISO)

Hypokalemic Periodic Paralysis, Type 1 (ISO)

intellectual disability (ISO)

myoclonic-atonic epilepsy (ISO)

parathyroid carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(S)-nicotine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-hydroxypropanoic acid (ISO)

3-chloropropane-1,2-diol (EXP)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acrolein (ISO)

acrylamide (EXP)

alpha-pinene (ISO)

antirheumatic drug (ISO)

arachidonic acid (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fipronil (EXP)

hydrogen peroxide (ISO)

ivermectin (ISO)

lead(0) (ISO)

melphalan (ISO)

menadione (ISO)

methamphetamine (ISO)

methidathion (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

nicotine (ISO)

ozone (EXP,ISO)

paracetamol (ISO)

PCB138 (ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

SB 431542 (ISO)

Soman (EXP)

titanium dioxide (ISO)

triacsin C (ISO)

trichostatin A (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament severing (ISO,ISS)

dendritic spine development (ISO,ISS)

excitatory synapse assembly (ISO)

extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration (ISO,ISS)

filopodium assembly (ISO,ISS)

inhibitory synapse assembly (ISO)

lamellipodium assembly involved in ameboidal cell migration (ISO)

negative regulation of cell migration (IBA)

negative regulation of neuron migration (ISO,ISS)

nervous system development (IEA)

neuron projection morphogenesis (ISO,ISS)

positive regulation of GTPase activity (ISO,ISS)

regulation of cell migration (ISO,ISS)

regulation of synapse assembly (ISO)

signal transduction (IEA)

substrate adhesion-dependent cell spreading (ISO)

Cellular Component

cytoplasm (IBA,IDA)

cytosol (ISO,ISS)

dendritic spine (ISO)

dendritic spine head (ISO,ISS)

glutamatergic synapse (ISO)

lamellipodium (ISO)

nucleus (IDA)

phagocytic vesicle (ISO,ISS)

plasma membrane (ISO,ISS)

postsynaptic density (ISO,ISS)

postsynaptic membrane (ISO,ISS)

Molecular Function

GTPase activator activity (ISO,ISS)

identical protein binding (ISO)

protein binding (ISO)

protein homodimerization activity (ISO,ISS)

small GTPase binding (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Dynamic expression of srGAP2 in cell nuclei and cytoplasm during the differentiation of rat neural stem cells in vitro.	Jiao Q, etal., Mol Med Rep. 2016 Nov;14(5):4599-4605. doi: 10.3892/mmr.2016.5795. Epub 2016 Oct 4.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Regulated shuttling of Slit-Robo-GTPase activating proteins between nucleus and cytoplasm during brain development.	Yao Q, etal., Cell Mol Neurobiol. 2008 Feb;28(2):205-21. Epub 2007 Aug 21.

Additional References at PubMed

PMID:12477932	PMID:12865426	PMID:19737524	PMID:20810653	PMID:21148482	PMID:22559944	PMID:26365803	PMID:30685845	PMID:32357304

Genomics

Comparative Map Data

Srgap2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	45,298,192 - 45,519,330 (-)	NCBI		GRCr8
mRatBN7.2	13	42,745,956 - 42,967,091 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	42,745,947 - 42,967,058 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	45,354,029 - 45,577,291 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	46,642,156 - 46,865,413 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	43,905,845 - 44,129,315 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	48,065,280 - 48,286,888 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	48,068,158 - 48,286,720 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	53,141,198 - 53,362,657 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	44,239,946 - 44,452,446 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	43,100,229 - 43,312,451 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

SRGAP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	206,203,541 - 206,464,436 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	206,203,346 - 206,464,436 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	206,516,197 - 206,637,776 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	204,582,823 - 204,704,406 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	179,840,685 - 179,889,229 (+)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	177,269,281 - 177,336,031 (+)	NCBI		HuRef
CHM1_1	1	207,651,212 - 207,909,982 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	205,467,727 - 205,728,612 (+)	NCBI		T2T-CHM13v2.0

Srgap2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	131,212,989 - 131,455,269 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	131,212,989 - 131,455,090 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	131,285,251 - 131,527,531 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	131,285,251 - 131,527,352 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	133,181,828 - 133,423,938 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	133,112,797 - 133,354,907 (-)	NCBI		MGSCv36	mm8
Celera	1	133,908,005 - 134,139,712 (-)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	56.93	NCBI

Srgap2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	41,801,235 - 42,050,731 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	41,801,235 - 42,050,731 (+)	NCBI	ChiLan1.0	ChiLan1.0

SRGAP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	42,913,844 - 43,168,344 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	42,879,341 - 43,133,846 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	181,808,318 - 182,064,583 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	186,090,389 - 186,346,012 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	186,092,113 - 186,346,019 (+)	Ensembl	panpan1.1		panPan2

SRGAP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	2,506,617 - 2,741,866 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	2,599,173 - 2,834,184 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	2,504,091 - 2,739,418 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	2,504,099 - 2,739,408 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	2,497,737 - 2,732,688 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	2,890,316 - 3,126,035 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	3,090,840 - 3,326,253 (+)	NCBI		UU_Cfam_GSD_1.0

Srgap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	68,855,976 - 69,097,751 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936557	6,096,246 - 6,338,108 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936557	6,096,258 - 6,338,024 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SRGAP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	66,838,123 - 67,117,315 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	66,838,062 - 67,117,315 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	73,085,753 - 73,361,203 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SRGAP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	22,897,699 - 23,147,097 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	22,897,469 - 23,145,218 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	23,596,464 - 23,848,743 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Srgap2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	4,935,472 - 5,169,050 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624807	4,937,573 - 5,169,104 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Srgap2
890 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	68
Count of miRNA genes:	55
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000008976
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	9313465	54313465	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	22301875	67301875	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	37415584	80753406	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	11929449	45417941	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	9831541	54831541	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	14915655	59915655	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	9831541	54831541	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39754544	84754544	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	5994668	44807491	Rat
70170	Eae14	Experimental allergic encephalomyelitis QTL 14		0.0024	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	23203448	68203448	Rat
2303032	Bp328	Blood pressure QTL 328			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	41184022	45417941	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	17694436	53050594	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34535218	79535218	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	38433408	83433408	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	11929449	46193066	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	23692969	68692969	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	31241331	93395974	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	32284471	77284471	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	31241331	58363171	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	37262092	82262092	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	37415584	82415584	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	23692969	68692969	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	15158722	60158722	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	9313465	54313465	Rat

Markers in Region

BE108135

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	42,963,130 - 42,963,286 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	48,282,793 - 48,282,948	NCBI	Rnor6.0
Rnor_5.0	13	53,358,711 - 53,358,866	UniSTS	Rnor5.0
RGSC_v3.4	13	44,448,519 - 44,448,674	UniSTS	RGSC3.4
Celera	13	43,308,524 - 43,308,679	UniSTS
RH 3.4 Map	13	111.3	UniSTS
Cytogenetic Map	13	q13	UniSTS

BE109592

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	42,789,446 - 42,789,622 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	48,108,771 - 48,108,946	NCBI	Rnor6.0
Rnor_5.0	13	53,184,689 - 53,184,864	UniSTS	Rnor5.0
RGSC_v3.4	13	44,274,793 - 44,274,968	UniSTS	RGSC3.4
Celera	13	43,135,071 - 43,135,246	UniSTS
RH 3.4 Map	13	110.2	UniSTS
Cytogenetic Map	13	q13	UniSTS

AU046573

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	42,801,095 - 42,801,267 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	48,120,419 - 48,120,590	NCBI	Rnor6.0
Rnor_5.0	13	53,196,337 - 53,196,508	UniSTS	Rnor5.0
RGSC_v3.4	13	44,286,441 - 44,286,612	UniSTS	RGSC3.4
Celera	13	43,146,719 - 43,146,890	UniSTS
Cytogenetic Map	13	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC113752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008976 ⟹ ENSRNOP00000008976

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	42,754,603 - 42,967,058 (-)	Ensembl
Rnor_6.0 Ensembl	13	48,073,927 - 48,286,720 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085967 ⟹ ENSRNOP00000068925

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	42,745,959 - 42,967,022 (-)	Ensembl
Rnor_6.0 Ensembl	13	48,068,158 - 48,284,408 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086928 ⟹ ENSRNOP00000070956

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	42,745,947 - 42,967,022 (-)	Ensembl
Rnor_6.0 Ensembl	13	48,070,362 - 48,284,990 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118487 ⟹ ENSRNOP00000078553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	42,745,947 - 42,967,022 (-)	Ensembl

RefSeq Acc Id:

NM_001134958 ⟹ NP_001128430

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,306,838 - 45,519,297 (-)	NCBI
mRatBN7.2	13	42,754,602 - 42,967,058 (-)	NCBI
Rnor_6.0	13	48,073,926 - 48,286,720 (-)	NCBI
Rnor_5.0	13	53,141,198 - 53,362,657 (-)	NCBI
RGSC_v3.4	13	44,239,946 - 44,452,446 (-)	RGD
Celera	13	43,100,229 - 43,312,451 (-)	RGD

Sequence:

show sequence

GGCGGAGTCTCCTTAGGGAACTGGGGGGCCGAACTGCGTAGAAGAGGGTGGCGGGGAGGAGAGC
GCTAAGTGGGAAGCGGAACCTTGGGCCTGGGACCCGTCGCGGCAGAGCCAGCCCTGTGAACCGG
AGCAAAGGACTTCCGATCCACTCTGCGCTGCAGCGGCACCCTTTTGGGATTTGATTTGCAGCAT
CTTTGAGCTGGTACCACACCAAAAAACAAAAACAAAACAAAACAAAAAACCGCGAAGAACGCCT
AGCCCTCCCCTGGCACCCCAAGACAAACCCACTCCCTCCAAGGGACACAGCTGGGCGCGTCCAC
ACCCCCGCATCCCCTACACCATGTTGTGCGGAAGGACTTCCACTCCCCGCCTGTGTCGTTGATG
TCAGACCCCAGGCCAGCCTCCGGGCTCTGCAGTTCTCCTGGTTAATGCTGCGGCTGTGGTTAGG
GCTTTAGTACATAAGCCAGCCGCCGCCGCCCCCCGCTTCCCCACCCCCGGCCTCAGCGCCCACA
GCCTGCATGTGTGTGCGGTAGCCGGCTGCCCATCCCGCCTCTCGTGTTCTCCCGGAGCTCTGGA
TACCACCGCGGGGCATTTCTCTGCCCCCGGGAGAAGTGGCCTTGGAGGAATTGATATTAGTGGT
TGGATTTTTCCCGTGGATCTATCAATTCACAATTCGGATTTGGAAGAAAAAAGGGAAACATGAC
GTCTCCAGCCAAATTCAAAAAGGATAAGGAGATCATCGCAGAGTATGATACTCAGGTCAAAGAG
ATCCGGGCTCAGCTCACAGAGCAGATGAAATGCCTAGATCAGCAGTGCGAGCTCCGGGTGCAGC
TGTTGCAAGACCTGCAGGACTTCTTCCGCAAGAAGGCTGAGATTGAGATGGACTACTCTCGCAA
CCTGGAGAAGCTAGCCGAGCGCTTTCTAGCCAAGACACGAAGCACTAAGGACCAGCAATTTAAG
AAGGACCAGAATGTTCTCTCTCCAGTCAACTGCTGGAACCTCCTCTTAAACCAGGTGAAGCGGG
AGAGCAGGGATCATACCACCCTGAGTGACATCTACCTGAATAATATAATTCCTCGATTTGTTCA
AGTCAGCGAGGACTCAGGAAGACTCTTTAAAAAGAGTAAAGAAGTTGGCCAGCAACTCCAGGAT
GACTTGATGAAGGTCCTGAACGAGCTTTATTCGGTCATGAAGACATATCACATGTACAATGCTG
ACAGCATCAGTGCTCAGAGCAAACTAAAGGAAGCAGAGAAGCAGGAAGAGAAGCAAATTGGCAA
ATCAGTAAAGCAAGAGGACCGGCAGACCCCTCGCTCCCCTGACTCCACGGCCAACGTCCGCATT
GAGGAGAAACATGTCCGGAGGAGTTCAGTGAAGAAGATCGAGAAGATGAAGGAGAAGCGACAAG
CCAAGTACACAGAGAACAAGCTGAAGGCCATTAAAGCCCGGAATGAGTATTTATTGGCTTTGGA
GGCAACCAACGCATCTGTCTTCAAGTACTACATCCATGACCTGTCTGATATTATTGATCAGTGT
TGTGACCTCGGCTACCATGCTAGCCTGAACCGGGCTCTACGCACTTTTCTGTCTGCTGAATTAA
ATCTGGAACAATCAAAACATGAAGGTCTGGATGCTATTGAAAATGCAGTGGAAAACCTAGATGC
CACCAGTGACAAGCAGCGGCTCATGGAGATGTACAATAATGTTTTCTGCCCCCCTATGAAGTTT
GAATTCCAGCCCCACATGGGAGATATGGCCTCTCAGCTCTGTGCCCAGCAGCCTGTCCAGAGTG
AGCTGGTGCAAAGACGCCAACAACTGCAGTCTCGCTTATCCACTCTGAAGATCGAGAATGAAGA
GGTGAAAAAGACGATGGAGGCCACCCTGCAGACCATACAGGACATCGTGACTGTTGAGGATTTT
GATGTATCTGACTGCTTCCAGTATAGCAATTCCATGGAGTCTGTCAAATCAACTGTCTCAGAAA
CGTTCATGAGCAAGCCTAGCATTGCTAAGAGGAGAGCTAACCAGCAGGAGACGGAACAGTTCTA
TTTCACGAAAATGAAGGAGTACTTGGAGGGTAGGAACCTCATCACTAAATTACAAGCCAAGCAT
GACCTCCTGCAGAAGACCCTGGGAGAAAGTCAGCGGACAGACTGTAGTCTTGCCAGGCGAAGCT
CAACCGTGAGGAAACAGGACTCCAGCCAGGCAATTCCTCTGGTGGTAGAAAGCTGCATCCGGTT
TATTAGCAGACATGGCCTACGACATGAGGGGGTTTTCCGGGTGTCTGGGTCACAAGTAGAAGTG
AACGACATAAAGAACGCCTTTGAGAGAGGAGAGGACCCCCTGGCTGGGGACCAGAATGACCATG
ACATGGACTCCATAGCTGGCGTCCTCAAGCTTTACTTCCGGGGGCTGGAACACCCGCTCTTCCC
CAAAGACATCTTCCATGACTTGATTGCCTGTGTCACAATGGACAACCTGCAAGAGAGAGCTGTG
CATATCCGGAAAGTCCTTCTGGTCCTGCCCAAGCCCACTCTGATTATCATGAGATACCTCTTTG
CCTTCCTCAATCACTTATCACAGTTCAGTGAAGAGAACATGATGGACCCCTACAACCTTGCCAT
CTGCTTCGGGCCCTCACTGATGTCAGTGCCAGAGGGCCACGACCAGGTGTCCTGTCAAGCCCAC
GTGAATGAACTGATCAAAACCATCATCATCCAACATGAGAACATTTTCCCAAATCCCAGGGAGC
TGGAGGGTCCCATCTACAGCAGAGGAGGGAGCATGGAGGATTACTGTGACAGCACTCATGGAGA
GACTATCTCTGCCGAAGACTCCACCCAGGACGTTACAGCGGAACACCACACAAGTGACGATGAG
TGTGAGCCCATTGAAGCCATTGCCAAGTTTGACTACGTAGGCCGGACAGCCCGAGAACTGTCTT
TCAAGAAGGGAGCATCCCTGCTGCTTTACCAGCGAGCCTCTGACGACTGGTGGGAAGGCCGGCA
CAATGGTATAGACGGACTCATCCCCCATCAGTACATCGTAGTCCAAGACACCGAGGACGGTGTC
GTGGAGAGGTCCAGCCCCAAGTCTGAGATTGAGGTCATGTCTGAGCCACCTGAAGAAAAGGTGA
CAGCCAGAACGGGGGCCAGCTGTCCCAGTGGGGGTCATGTAGCTGATATTTATCTTGCAAACAT
CAACAAAGGGATTCCTCGTTCGCCCGCCCATGAGCTGCCGCCTCCCCAAGAGGCACTCAGGCTA
TTGGAGAACTAATCTCATCTCAAGGGGCCAGACACCAAGTCCTACAGACCTCTTTCCGCCAGAC
CCTGAACTGTGGCCCAGTGCCAAGAGGATGACAAGCCCCGGGGCACTCCTGGTGAACGTCGATT
GGAGATGACGTACAGTTTGTATTCCTCCTGACTTTGGAGGGGTTAAATGATTTGCACTTTGATA
CCCTGTTAACCATAGCTTCTGGACACTGAGACTGGAAGGAGAATAAAAGATGCTTATTGTTTTT
AAACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001401376 ⟹ NP_001388305

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,298,192 - 45,519,330 (-)	NCBI
mRatBN7.2	13	42,745,956 - 42,967,091 (-)	NCBI

RefSeq Acc Id:

XM_006249783 ⟹ XP_006249845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,298,192 - 45,518,438 (-)	NCBI
mRatBN7.2	13	42,745,956 - 42,966,205 (-)	NCBI
Rnor_6.0	13	48,065,280 - 48,285,808 (-)	NCBI
Rnor_5.0	13	53,141,198 - 53,362,657 (-)	NCBI

Sequence:

show sequence

TGGAGCTCTTCCCTCAGCCTTCCTGCGGTCGCCTCTCGCGCCTCCTGGAGCGACTATCACTGAT
GCCTCTCACCCGACTGGGATTGGCCCTGTGAACCGGAGCAAAGGACTTCCGATCCACTCTGCGC
TGCAGCGGCACCCTTTTGGGATTTGATTTGCAGCATCTTTGAGCTGGTACCACACCAAAAAACA
AAAACAAAACAAAACAAAAAACCGCGAAGAACGCCTAGCCCTCCCCTGGCACCCCAAGACAAAC
CCACTCCCTCCAAGGGACACAGCTGGGCGCGTCCACACCCCCGCATCCCCTACACCATGTTGTG
CGGAAGGACTTCCACTCCCCGCCTGTGTCGTTGATGTCAGACCCCAGGCCAGCCTCCGGGCTCT
GCAGTTCTCCTGGTTAATGCTGCGGCTGTGGTTAGGGCTTTAGTACATAAGCCAGCCGCCGCCG
CCCCCCGCTTCCCCACCCCCGGCCTCAGCGCCCACAGCCTGCATGTGTGTGCGGTAGCCGGCTG
CCCATCCCGCCTCTCGTGTTCTCCCGGAGCTCTGGATACCACCGCGGGGCATTTCTCTGCCCCC
GGGAGAAGTGGCCTTGGAGGAATTGATATTAGTGGTTGGATTTTTCCCGTGGATCTATCAATTC
ACAATTCGGATTTGGAAGAAAAAAGGGAAACATGACGTCTCCAGCCAAATTCAAAAAGGATAAG
GAGATCATCGCAGAGTATGATACTCAGGTCAAAGAGATCCGGGCTCAGCTCACAGAGCAGATGA
AATGCCTAGATCAGCAGTGCGAGCTCCGGGTGCAGCTGTTGCAAGACCTGCAGGACTTCTTCCG
CAAGAAGGCTGAGATTGAGATGGACTACTCTCGCAACCTGGAGAAGCTAGCCGAGCGCTTTCTA
GCCAAGACACGAAGCACTAAGGACCAGCAATTTAAGAAGGACCAGAATGTTCTCTCTCCAGTCA
ACTGCTGGAACCTCCTCTTAAACCAGGTGAAGCGGGAGAGCAGGGATCATACCACCCTGAGTGA
CATCTACCTGAATAATATAATTCCTCGATTTGTTCAAGTCAGCGAGGACTCAGGAAGACTCTTT
AAAAAGAGTAAAGAAGTTGGCCAGCAACTCCAGGATGACTTGATGAAGGTCCTGAACGAGCTTT
ATTCGGTCATGAAGACATATCACATGTACAATGCTGACAGCATCAGTGCTCAGAGCAAACTAAA
GGAAGCAGAGAAGCAGGAAGAGAAGCAAATTGGCAAATCAGTAAAGCAAGAGGACCGGCAGACC
CCTCGCTCCCCTGACTCCACGGCCAACGTCCGCATTGAGGAGAAACATGTCCGGAGGAGTTCAG
TGAAGAAGATCGAGAAGATGAAGGAGAAGCGACAAGCCAAGTACACAGAGAACAAGCTGAAGGC
CATTAAAGCCCGGAATGAGTATTTATTGGCTTTGGAGGCAACCAACGCATCTGTCTTCAAGTAC
TACATCCATGACCTGTCTGATATTATTGATCAGTGTTGTGACCTCGGCTACCATGCTAGCCTGA
ACCGGGCTCTACGCACTTTTCTGTCTGCTGAATTAAATCTGGAACAATCAAAACATGAAGGTCT
GGATGCTATTGAAAATGCAGTGGAAAACCTAGATGCCACCAGTGACAAGCAGCGGCTCATGGAG
ATGTACAATAATGTTTTCTGCCCCCCTATGAAGTTTGAATTCCAGCCCCACATGGGAGATATGG
CCTCTCAGCTCTGTGCCCAGCAGCCTGTCCAGAGTGAGCTGGTGCAAAGACGCCAACAACTGCA
GTCTCGCTTATCCACTCTGAAGATCGAGAATGAAGAGGTGAAAAAGACGATGGAGGCCACCCTG
CAGACCATACAGGACATCGTGACTGTTGAGGATTTTGATGTATCTGACTGCTTCCAGTATAGCA
ATTCCATGGAGTCTGTCAAATCAACTGTCTCAGAAACGTTCATGAGCAAGCCTAGCATTGCTAA
GAGGAGAGCTAACCAGCAGGAGACGGAACAGTTCTATTTCACGAAAATGAAGGAGTACTTGGAG
GGTAGGAACCTCATCACTAAATTACAAGCCAAGCATGACCTCCTGCAGAAGACCCTGGGAGAAA
GTCAGCGGACAGACTGTAGTCTTGCCAGGCGAAGCTCAACCGTGAGGAAACAGGACTCCAGCCA
GGCAATTCCTCTGGTGGTAGAAAGCTGCATCCGGTTTATTAGCAGACATGGCCTACGACATGAG
GGGGTTTTCCGGGTGTCTGGGTCACAAGTAGAAGTGAACGACATAAAGAACGCCTTTGAGAGAG
GAGAGGACCCCCTGGCTGGGGACCAGAATGACCATGACATGGACTCCATAGCTGGCGTCCTCAA
GCTTTACTTCCGGGGGCTGGAACACCCGCTCTTCCCCAAAGACATCTTCCATGACTTGATTGCC
TGTGTCACAATGGACAACCTGCAAGAGAGAGCTGTGCATATCCGGAAAGTCCTTCTGGTCCTGC
CCAAGCCCACTCTGATTATCATGAGATACCTCTTTGCCTTCCTCAATCACTTATCACAGTTCAG
TGAAGAGAACATGATGGACCCCTACAACCTTGCCATCTGCTTCGGGCCCTCACTGATGTCAGTG
CCAGAGGGCCACGACCAGGTGTCCTGTCAAGCCCACGTGAATGAACTGATCAAAACCATCATCA
TCCAACATGAGAACATTTTCCCAAATCCCAGGGAGCTGGAGGGTCCCATCTACAGCAGAGGAGG
GAGCATGGAGGATTACTGTGACAGCACTCATGGAGAGACTATCTCTGCCGAAGACTCCACCCAG
GACGTTACAGCGGAACACCACACAAGTGACGATGAGTGTGAGCCCATTGAAGCCATTGCCAAGT
TTGACTACGTAGGCCGGACAGCCCGAGAACTGTCTTTCAAGAAGGGAGCATCCCTGCTGCTTTA
CCAGCGAGCCTCTGACGACTGGTGGGAAGGCCGGCACAATGGTATAGACGGACTCATCCCCCAT
CAGTACATCGTAGTCCAAGACACCGAGGACGGTGTCGTGGAGAGGTCCAGCCCCAAGTCTGAGA
TTGAGGTCATGTCTGAGCCACCTGAAGAAAAGGTGACAGCCAGAACGGGGGCCAGCTGTCCCAG
TGGGGGTCATGTAGCTGATATTTATCTTGCAAACATCAACAAGCAAAGGAAGCGTCCAGAATCT
GGGAGCATCAGAAAAGCATTTCGGAGTGACAGCCATGGGCTGGGCAGTTCTCTGACTGACTCCT
CCTCCCCGGGGGTGGGGGCTAGCTGCCGTCCATCCTCCCAGCCCATCATGAGCCAGAATCTCCC
CAAGGAAGGGCCAGATAAGTGTTCCATCAGCGGCCATGGCAGCCTCAACTCTATCAGCCGCCAC
TCATCCTTGAAGAACCGGATGGACAGTCCACAGATCCGAAAGACTGCCACGGCAGGAAGGTCAA
AAAGCTTCAATAACCATCGGCCCATGGACCCCGAAGTCATTGCACAGGATATTGAAGCAACAAT
GAACTCTGCCCTGAATGAGCTTCAAGAGCTAGAGCGGCAGAGCAGTGCTAAGCACACACCTGAT
GTGGTTCTGGACACCTTGGAACCCCTCAAGACCTCCCCAGTTGTAGCCCCCACATCTGAGCCCT
CCAGCCCCCTGCACACCCAGCTCCTCAAGGACCCTGAGCCTGCCTTCCAGCGCAGTGCCAGTAC
TGCTGGGGATATTGCCTGCGCCTTCCGGCCTGTCAAGTCTGTCAAGATGGCTGCTCCAGTCAAA
CCACCAGCCACACGGCCCAAACCAACTGTCTTCCCCAAAACAAATGCCACTAGCCCTGGTGTCA
ACTCATCTGCTTCCCCACAGTCCACTGACAAGTCTTGTACTGTCTAAGGGGTATAACGTAATTA
TTCTAGACAAGGAGACTGGCCGTTTTTAAAATCTTCCTATTTAACTAGCTTGGGGACTCGGTTG
AAAATTAGGTTCTAAGTTGTTCTTACAGGAATTAGCCTTCCCATTACCCAGACCTTGAGAATGA
AGCCCTTGTTACTGCTTTCCCCTTTCTGGTCCCTCCCTCTGCTCTTTGCTTCCCTCTGTTGTTA
TAATCCAACCAGCTCCAGTACATACTCTTCTTAGGTTAGCCAGTGGCAGGCTCTCCTTTATCGG
GTTGCTGTGATACCTGCCAAAACAAGACACGGGACATGGGCCTGTCCTCTGTCCCTTCAGACCA
TAGAGGACACCTTGACCAGATGTTCGGCTGCAGCCAGTCAGCTCTCAGTGGCATCTTGGTTTTC
AGTACTGACTTAAAAACTCATATATAGCCCAGTTTTCATTTTATATAAATATATATATGTGTGT
GTGTATGCGCGTGCACATGCACACCTATACACACACACAGGTTTTTCTGGTCTCTGGTGTAGCC
TCTCTGGTCTCCTCTCTTTGTTGTGGTGGCAGTTCACACAGAAGCCACCAGGAGTCTCTGTTCT
CATCACAAACTTTGTGCTGTTTGGAACAGAGAAACCTGGCCTTTGAAATCTCTCTGTCGTAAAA
ATTGAGCAGAATGGGACAGCCCTATGATCTGATGTGCGGGGGGTCCTGTCTTCTTCCTCTCGCG
TGAGTTAGTCACTGGTTGCTCCCATTTGCTCTGCTCCGTTCTGTAGAAGTGCATCCCAGTCTGA
TTACAGAGCTTTTGAAGTGTTTCTGAACATAGAGACTTTTCTTCTGTTCCTGTCTTTGTCTCTG
ACACAATTCTCCATGTAAGATGTTTTCCAATATAAGACAGTTCTATAGCTAGTTCCTTTTAGAG
TTAAAAGGTCTTAATTAAAGTTTTATTGTGTTTATAACAGGTTTGAAAAGGGTAGGAAATGGGT
CCTTCTTCCTCCCACCATTTTTGGCATTTAAAACTTTTAAAATTCACCACTCCATTAAAAAGAA
AATTAAGTTGCTCTCTTCTAATCCAAAAATCTGCCCAGATTAAAACTATTTCAAGTTCACCTCT
TGGCTTAGTTTTTTTTGTTTTTTGTTTTTTGTTTTTTTTAATCAAACTCTGTCTGGATGAATAG
GGGCTTGAAAAGCCCTTGACAAATTCTTAAAGTACTGCCTCTTGAAACTGTTTTGTCTATCCAA
ACAAGGATGACTAAGGGAACTTTGACCCCCACAAACTCAATATTGCTTAAATCTTTAAAAAGGG
AAAAATTGAATGTCTCCCATTGGGTCCTGCCTTTGGCTTTTTTCAGATGTGCTACCATTGAATG
CTCTCCCAGCCTACAAGCCTGGTGCTTGGAACACCTACTCCTCTTACCCCGTGCTAAATCATAC
TTTGGGATCCTGTGTTTCAACAGCGCCTTGCAACTCAGGCTCTTTCTTCCTGTTTCCTGATGTG
AATGCTATGCTTTGACCATATTGTTTTTCTATAGTTCAAGAGAAATGGGTTTGCCATTCGGGTT
GGAAAATCTGAGTGTTCTTAGATTTGAGCTAGAAATGATCCTGCTGGACCACTTGCGAAGCTGG
TAGTTGGATCTGTAGAAAGTGGTGGATGTCTCTCTCTGGGTGAAGGGATGGGAGCCTGAAGGAG
TCACTAAGGAGAAGAGTAACTTGCAGCACCAGGAGATGGCTCCCAAAGCTAGAGAAGAGCGCCC
TAGCACTCCATGAGTAGCGTGAGTCTGACTGCGTGGGGCACCCGTGGTCCTTTGGATGTTGGTT
CTTAGTGTTCTTTTCCACTGACCTGGGCTTGTGCTGCTCCTGAGCCAGTAGGGGCTCCAGACCC
AAGGATCCATTTCCTTGCTGAACATGAAGCTCCACCCTTTACTTTGTACATTCCTCCTCATCCG
AGTGATCAGTTTCCAGCCTGCCCTTTACCCTCTCTCTCCAGGACACCACCTTCTAAGAAGGAAA
AAGCAGAGGTTCTTGAAGACCATACTTTGGGCCTGCTCTGTTTTTCTCTCTTAACCCTGTACAT
TATTTGTGTTCTTCACCCCTTCGGTCCATGTCCATCTGCTGATTTGCATAATGAACTGGACAGT
GTCCAAGTGGTTCCCTACTAACCCCAGCTCTGGGAGCCTAGCTGTCTTCCTTATCTCTGGTGCT
TCTGACGCCTGTGAGATGGTCCTGTTAAAAGGAGTAGGAACCAAAAGGAGGAGAGTCCTCCTCA
GCAGAGCTCACTTCAACTGGAATTGAGGTTGCACACTGTGATTTCACAACCAAAAGCCAAAAGG
AGCCGGCCACCCCAGGCCTTGGGCAACCAGCCTTCCTCAGATAGGCTTGCCCGAAACCAGCATG
ATGCTTCCAAGAGCCCTGCTCTGCCCCTCGTGGCATGGATCCTTTCCCTGGTATGGACTTAAGT
CTCTGGGGAAGAAAAGTGGGTGGGGCTACCAGCATCCCAGTTTGGAAGGTAGAGGAGTTTGCCA
CCAGCAGCTTATAAACTGGAAATGCTGGTCTCTGCCAGCCTCTTCAGCCACCCTCATTTATCCC
CAAGGAGATGCGAAATCCTTCCAGTACCAGGATGAACAGACAGACCACTGGAAGGGCTGGTGTG
CATGGACTTCGGTTCAGAAGAGAACTTAGATCTTCCAGGGAACTGCAGTGTCGTGGCGTCTGAT
TTGTATGTCACATTTGTGTAAAATGGTATGTTCTTTAAAATGGTGTTGATAACTGGAATATTGT
ATGTATGCTTGAAGATGCTTTGTGTGAACCTAAGACTCACTCAGCTGATGTTGGATTGGGGAAA
ATCCAAAGCACAACTTCAAAATAAAATACATTTTTAGGTTTC

hide sequence

RefSeq Acc Id:

XM_006249785 ⟹ XP_006249847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,298,192 - 45,430,156 (-)	NCBI
mRatBN7.2	13	42,745,956 - 42,877,914 (-)	NCBI
Rnor_6.0	13	48,065,280 - 48,197,183 (-)	NCBI
Rnor_5.0	13	53,141,198 - 53,362,657 (-)	NCBI

Sequence:

show sequence

GAGATGGACTACTCTCGCAACCTGGAGAAGCTAGCCGAGCGCTTTCTAGCCAAGACACGAAGCA
CTAAGGACCAGCAATTTAAAGACGTGCAGCTGCTTGGTTAATTGCCTGTCGCTGTCTTCTCCAA
CTGCGATTTGCTGAGTGTTGTGCACTTTGAGCAGGCTGCGCTCTTGGCTGTGGCCCGGTGCCTG
TTGCAGAGCATGTTGGAAATGGATGAAAGCTAAGTCCTCGAGTGTTTGGAAATGAAAATACTAA
TATTTCTCCCATTTGCATAGTGTTTTGTGTTGCTAAAGTTCTCTCGAATCCATCATCTCAGCTG
ATCTACAATAACAGCCCTGCGGAAGGGCAAATAATAGACTGTAGACCCAGAAGGAAACCTCAGA
ATAGCAGTGCAGAAGCTCTAGCCATCCAAGCATCAGGCTTGTGCTCCAAGGGCCATAAATGTGG
CTGTGGTTAATTAATAGCCATCCGTACTGGAGGAGCTTCTGGGAGCTTAGCAGTGATCTATTGA
AGATCTTTCAGGAGCTAGATGGGCACTGTCCACTCTGTAGATGACCTGGTAGGAAATTGGTGGG
ACAAGTGTCTTTGTACGTGAGCTTACTAAAACAACTAGGAGATATGAGGGGGGAGATAGTAATT
AATATACAGATTTTATGATCGAGGGGCTGCTTTTTATCTTGGTCATCTTAGAGATCTTTTTAGT
CATCTGTTCAGAAGTTTTTGAGCATCCATAAGTGTAATCTCTACTGAGGGAGAAAAACTGGGCT
CCTGTCTTCAAACTAATCTTAGCGGTTCAGTTGTGCAGGTTTCTCTAGTGTGGTACCTTTGTAG
TGACAATCTCTTTTGTAGTTGTACACTGGTTTGTGACTTTCTGGGTTTCCTTTCTTTTGACTAA
AGTCATCTCTTATGCAGCACAGTGGTATTTTCTTGATCTTCCTCCTGAATTTTTTTTAAGTAAG
GAAAACACTTCTGGATACTTTGTTTGCTTTTTAGGGATGGGTTTAAGGAGGTTCACGGCTGTGT
TCCAGCACAGTCCTAAGAGACGCAAACCCTTTAAATGTCCAGGGATTGTACAGCCTGAGACTTG
GGGTTGGGGACAGGAAAGTAAAGACAATGTACTAACAAATGTTAGATGGAAAAGATATATAGAC
AGATTTTAATCTCCTAAACAAATAAAGTTCTCCCAGTTTCATTGGCTACAAATCAAACAAGCTG
CAGAACTGCTAGAGCAGGAGGCCGTACTCTCAGAGCCTTGCTACTCTCCTAGGAAAGCATGTCT
GACTGGCTTGCTTGTTTTCCAGCCTGAAGAGTGTTGCGGCTTTGTTCTTATCAGCCAGGAAAAT
TGCCTGTGTAGTGTACTTACTTCTCCCTTCTCCACAGTCTCTTCACCTTTCTTGTCCTGACATG
GCCTGAAAAGAAAAAGCATCTATTTGTATGAGAATAGTGTCTGAGAAATAATTCAGATTTATAG
AATCCAGACACTGCGTTAAAAGCTATAGTACTATTAAAAGACTGCAACTCCTGGAAGAAACGAG
GTAGCTGTTGATACTGGCTTGTGTCTGCTGTTGTCTTCTGTGGCAGGGTCCTTCTGTGTGTCCG
TCTGGTCAGCCCACACTAACTTCAGATTCTGACCCTTACACCTCTACCCTGGATGCGGGGCTTA
TAGCCACCGTGCCTGGTCATAGACTAGACAGACACAGAGAGAGAACACGATATTTTTAAACTAC
AGCGTTTTAGAGTTTATCAGAATCAGTCATTATGAACGATGAGGCTGTGTTTATGAATTAAGAA
TATTGATACCAGAAATATGACTAAAAGTAGTTTTCTGTAGTTTCCTCATCACCATTATTTCTGT
GTTTGGTTTAGATTCTTCACTATTAATAAAGTCCTGCAGGATGGAGATATGGCTCAGCAGTAGA
GTGTTTGCCTAGAATGTACAAGACCCTGGTTCAATCCACAGACGCTCTTGCCACGCCTCCAATT
TTTTTTAATAGGAAGGACCAGAATGTTCTCTCTCCAGTCAACTGCTGGAACCTCCTCTTAAACC
AGGTGAAGCGGGAGAGCAGGGATCATACCACCCTGAGTGACATCTACCTGAATAATATAATTCC
TCGATTTGTTCAAGTCAGCGAGGACTCAGGAAGACTCTTTAAAAAGAGTAAAGAAGTTGGCCAG
CAACTCCAGGATGACTTGATGAAGGTCCTGAACGAGCTTTATTCGGTCATGAAGACATATCACA
TGTACAATGCTGACAGCATCAGTGCTCAGAGCAAACTAAAGGAAGCAGAGAAGCAGGAAGAGAA
GCAAATTGGCAAATCAGTAAAGCAAGAGGACCGGCAGACCCCTCGCTCCCCTGACTCCACGGCC
AACGTCCGCATTGAGGAGAAACATGTCCGGAGGAGTTCAGTGAAGAAGATCGAGAAGATGAAGG
AGAAGCGACAAGCCAAGTACACAGAGAACAAGCTGAAGGCCATTAAAGCCCGGAATGAGTATTT
ATTGGCTTTGGAGGCAACCAACGCATCTGTCTTCAAGTACTACATCCATGACCTGTCTGATATT
ATTGATCAGTGTTGTGACCTCGGCTACCATGCTAGCCTGAACCGGGCTCTACGCACTTTTCTGT
CTGCTGAATTAAATCTGGAACAATCAAAACATGAAGGTCTGGATGCTATTGAAAATGCAGTGGA
AAACCTAGATGCCACCAGTGACAAGCAGCGGCTCATGGAGATGTACAATAATGTTTTCTGCCCC
CCTATGAAGTTTGAATTCCAGCCCCACATGGGAGATATGGCCTCTCAGCTCTGTGCCCAGCAGC
CTGTCCAGAGTGAGCTGGTGCAAAGACGCCAACAACTGCAGTCTCGCTTATCCACTCTGAAGAT
CGAGAATGAAGAGGTGAAAAAGACGATGGAGGCCACCCTGCAGACCATACAGGACATCGTGACT
GTTGAGGATTTTGATGTATCTGACTGCTTCCAGTATAGCAATTCCATGGAGTCTGTCAAATCAA
CTGTCTCAGAAACGTTCATGAGCAAGCCTAGCATTGCTAAGAGGAGAGCTAACCAGCAGGAGAC
GGAACAGTTCTATTTCACGAAAATGAAGGAGTACTTGGAGGGTAGGAACCTCATCACTAAATTA
CAAGCCAAGCATGACCTCCTGCAGAAGACCCTGGGAGAAAGTCAGCGGACAGACTGTAGTCTTG
CCAGGCGAAGCTCAACCGTGAGGAAACAGGACTCCAGCCAGGCAATTCCTCTGGTGGTAGAAAG
CTGCATCCGGTTTATTAGCAGACATGGCCTACGACATGAGGGGGTTTTCCGGGTGTCTGGGTCA
CAAGTAGAAGTGAACGACATAAAGAACGCCTTTGAGAGAGGAGAGGACCCCCTGGCTGGGGACC
AGAATGACCATGACATGGACTCCATAGCTGGCGTCCTCAAGCTTTACTTCCGGGGGCTGGAACA
CCCGCTCTTCCCCAAAGACATCTTCCATGACTTGATTGCCTGTGTCACAATGGACAACCTGCAA
GAGAGAGCTGTGCATATCCGGAAAGTCCTTCTGGTCCTGCCCAAGCCCACTCTGATTATCATGA
GATACCTCTTTGCCTTCCTCAATCACTTATCACAGTTCAGTGAAGAGAACATGATGGACCCCTA
CAACCTTGCCATCTGCTTCGGGCCCTCACTGATGTCAGTGCCAGAGGGCCACGACCAGGTGTCC
TGTCAAGCCCACGTGAATGAACTGATCAAAACCATCATCATCCAACATGAGAACATTTTCCCAA
ATCCCAGGGAGCTGGAGGGTCCCATCTACAGCAGAGGAGGGAGCATGGAGGATTACTGTGACAG
CACTCATGGAGAGACTATCTCTGCCGAAGACTCCACCCAGGACGTTACAGCGGAACACCACACA
AGTGACGATGAGTGTGAGCCCATTGAAGCCATTGCCAAGTTTGACTACGTAGGCCGGACAGCCC
GAGAACTGTCTTTCAAGAAGGGAGCATCCCTGCTGCTTTACCAGCGAGCCTCTGACGACTGGTG
GGAAGGCCGGCACAATGGTATAGACGGACTCATCCCCCATCAGTACATCGTAGTCCAAGACACC
GAGGACGGTGTCGTGGAGAGGTCCAGCCCCAAGTCTGAGATTGAGGTCATGTCTGAGCCACCTG
AAGAAAAGGTGACAGCCAGAACGGGGGCCAGCTGTCCCAGTGGGGGTCATGTAGCTGATATTTA
TCTTGCAAACATCAACAAGCAAAGGAAGCGTCCAGAATCTGGGAGCATCAGAAAAGCATTTCGG
AGTGACAGCCATGGGCTGGGCAGTTCTCTGACTGACTCCTCCTCCCCGGGGGTGGGGGCTAGCT
GCCGTCCATCCTCCCAGCCCATCATGAGCCAGAATCTCCCCAAGGAAGGGCCAGATAAGTGTTC
CATCAGCGGCCATGGCAGCCTCAACTCTATCAGCCGCCACTCATCCTTGAAGAACCGGATGGAC
AGTCCACAGATCCGAAAGACTGCCACGGCAGGAAGGTCAAAAAGCTTCAATAACCATCGGCCCA
TGGACCCCGAAGTCATTGCACAGGATATTGAAGCAACAATGAACTCTGCCCTGAATGAGCTTCA
AGAGCTAGAGCGGCAGAGCAGTGCTAAGCACACACCTGATGTGGTTCTGGACACCTTGGAACCC
CTCAAGACCTCCCCAGTTGTAGCCCCCACATCTGAGCCCTCCAGCCCCCTGCACACCCAGCTCC
TCAAGGACCCTGAGCCTGCCTTCCAGCGCAGTGCCAGTACTGCTGGGGATATTGCCTGCGCCTT
CCGGCCTGTCAAGTCTGTCAAGATGGCTGCTCCAGTCAAACCACCAGCCACACGGCCCAAACCA
ACTGTCTTCCCCAAAACAAATGCCACTAGCCCTGGTGTCAACTCATCTGCTTCCCCACAGTCCA
CTGACAAGTCTTGTACTGTCTAAGGGGTATAACGTAATTATTCTAGACAAGGAGACTGGCCGTT
TTTAAAATCTTCCTATTTAACTAGCTTGGGGACTCGGTTGAAAATTAGGTTCTAAGTTGTTCTT
ACAGGAATTAGCCTTCCCATTACCCAGACCTTGAGAATGAAGCCCTTGTTACTGCTTTCCCCTT
TCTGGTCCCTCCCTCTGCTCTTTGCTTCCCTCTGTTGTTATAATCCAACCAGCTCCAGTACATA
CTCTTCTTAGGTTAGCCAGTGGCAGGCTCTCCTTTATCGGGTTGCTGTGATACCTGCCAAAACA
AGACACGGGACATGGGCCTGTCCTCTGTCCCTTCAGACCATAGAGGACACCTTGACCAGATGTT
CGGCTGCAGCCAGTCAGCTCTCAGTGGCATCTTGGTTTTCAGTACTGACTTAAAAACTCATATA
TAGCCCAGTTTTCATTTTATATAAATATATATATGTGTGTGTGTATGCGCGTGCACATGCACAC
CTATACACACACACAGGTTTTTCTGGTCTCTGGTGTAGCCTCTCTGGTCTCCTCTCTTTGTTGT
GGTGGCAGTTCACACAGAAGCCACCAGGAGTCTCTGTTCTCATCACAAACTTTGTGCTGTTTGG
AACAGAGAAACCTGGCCTTTGAAATCTCTCTGTCGTAAAAATTGAGCAGAATGGGACAGCCCTA
TGATCTGATGTGCGGGGGGTCCTGTCTTCTTCCTCTCGCGTGAGTTAGTCACTGGTTGCTCCCA
TTTGCTCTGCTCCGTTCTGTAGAAGTGCATCCCAGTCTGATTACAGAGCTTTTGAAGTGTTTCT
GAACATAGAGACTTTTCTTCTGTTCCTGTCTTTGTCTCTGACACAATTCTCCATGTAAGATGTT
TTCCAATATAAGACAGTTCTATAGCTAGTTCCTTTTAGAGTTAAAAGGTCTTAATTAAAGTTTT
ATTGTGTTTATAACAGGTTTGAAAAGGGTAGGAAATGGGTCCTTCTTCCTCCCACCATTTTTGG
CATTTAAAACTTTTAAAATTCACCACTCCATTAAAAAGAAAATTAAGTTGCTCTCTTCTAATCC
AAAAATCTGCCCAGATTAAAACTATTTCAAGTTCACCTCTTGGCTTAGTTTTTTTTGTTTTTTG
TTTTTTGTTTTTTTTAATCAAACTCTGTCTGGATGAATAGGGGCTTGAAAAGCCCTTGACAAAT
TCTTAAAGTACTGCCTCTTGAAACTGTTTTGTCTATCCAAACAAGGATGACTAAGGGAACTTTG
ACCCCCACAAACTCAATATTGCTTAAATCTTTAAAAAGGGAAAAATTGAATGTCTCCCATTGGG
TCCTGCCTTTGGCTTTTTTCAGATGTGCTACCATTGAATGCTCTCCCAGCCTACAAGCCTGGTG
CTTGGAACACCTACTCCTCTTACCCCGTGCTAAATCATACTTTGGGATCCTGTGTTTCAACAGC
GCCTTGCAACTCAGGCTCTTTCTTCCTGTTTCCTGATGTGAATGCTATGCTTTGACCATATTGT
TTTTCTATAGTTCAAGAGAAATGGGTTTGCCATTCGGGTTGGAAAATCTGAGTGTTCTTAGATT
TGAGCTAGAAATGATCCTGCTGGACCACTTGCGAAGCTGGTAGTTGGATCTGTAGAAAGTGGTG
GATGTCTCTCTCTGGGTGAAGGGATGGGAGCCTGAAGGAGTCACTAAGGAGAAGAGTAACTTGC
AGCACCAGGAGATGGCTCCCAAAGCTAGAGAAGAGCGCCCTAGCACTCCATGAGTAGCGTGAGT
CTGACTGCGTGGGGCACCCGTGGTCCTTTGGATGTTGGTTCTTAGTGTTCTTTTCCACTGACCT
GGGCTTGTGCTGCTCCTGAGCCAGTAGGGGCTCCAGACCCAAGGATCCATTTCCTTGCTGAACA
TGAAGCTCCACCCTTTACTTTGTACATTCCTCCTCATCCGAGTGATCAGTTTCCAGCCTGCCCT
TTACCCTCTCTCTCCAGGACACCACCTTCTAAGAAGGAAAAAGCAGAGGTTCTTGAAGACCATA
CTTTGGGCCTGCTCTGTTTTTCTCTCTTAACCCTGTACATTATTTGTGTTCTTCACCCCTTCGG
TCCATGTCCATCTGCTGATTTGCATAATGAACTGGACAGTGTCCAAGTGGTTCCCTACTAACCC
CAGCTCTGGGAGCCTAGCTGTCTTCCTTATCTCTGGTGCTTCTGACGCCTGTGAGATGGTCCTG
TTAAAAGGAGTAGGAACCAAAAGGAGGAGAGTCCTCCTCAGCAGAGCTCACTTCAACTGGAATT
GAGGTTGCACACTGTGATTTCACAACCAAAAGCCAAAAGGAGCCGGCCACCCCAGGCCTTGGGC
AACCAGCCTTCCTCAGATAGGCTTGCCCGAAACCAGCATGATGCTTCCAAGAGCCCTGCTCTGC
CCCTCGTGGCATGGATCCTTTCCCTGGTATGGACTTAAGTCTCTGGGGAAGAAAAGTGGGTGGG
GCTACCAGCATCCCAGTTTGGAAGGTAGAGGAGTTTGCCACCAGCAGCTTATAAACTGGAAATG
CTGGTCTCTGCCAGCCTCTTCAGCCACCCTCATTTATCCCCAAGGAGATGCGAAATCCTTCCAG
TACCAGGATGAACAGACAGACCACTGGAAGGGCTGGTGTGCATGGACTTCGGTTCAGAAGAGAA
CTTAGATCTTCCAGGGAACTGCAGTGTCGTGGCGTCTGATTTGTATGTCACATTTGTGTAAAAT
GGTATGTTCTTTAAAATGGTGTTGATAACTGGAATATTGTATGTATGCTTGAAGATGCTTTGTG
TGAACCTAAGACTCACTCAGCTGATGTTGGATTGGGGAAAATCCAAAGCACAACTTCAAAATAA
AATACATTTTTAGGTTTC

hide sequence

RefSeq Acc Id:

XM_039090884 ⟹ XP_038946812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,298,192 - 45,519,323 (-)	NCBI
mRatBN7.2	13	42,745,956 - 42,967,083 (-)	NCBI

RefSeq Acc Id:

XM_039090885 ⟹ XP_038946813

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,301,312 - 45,519,323 (-)	NCBI
mRatBN7.2	13	42,749,079 - 42,967,083 (-)	NCBI

RefSeq Acc Id:

XM_039090886 ⟹ XP_038946814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,303,438 - 45,519,323 (-)	NCBI
mRatBN7.2	13	42,751,163 - 42,967,083 (-)	NCBI

RefSeq Acc Id:

XM_039090887 ⟹ XP_038946815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,298,192 - 45,369,615 (-)	NCBI
mRatBN7.2	13	42,745,956 - 42,817,378 (-)	NCBI

RefSeq Acc Id:

XM_039090888 ⟹ XP_038946816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,308,093 - 45,519,323 (-)	NCBI
mRatBN7.2	13	42,755,856 - 42,967,083 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128430	(Get FASTA)	NCBI Sequence Viewer
	NP_001388305	(Get FASTA)	NCBI Sequence Viewer
	XP_006249845	(Get FASTA)	NCBI Sequence Viewer
	XP_006249847	(Get FASTA)	NCBI Sequence Viewer
	XP_038946812	(Get FASTA)	NCBI Sequence Viewer
	XP_038946813	(Get FASTA)	NCBI Sequence Viewer
	XP_038946814	(Get FASTA)	NCBI Sequence Viewer
	XP_038946815	(Get FASTA)	NCBI Sequence Viewer
	XP_038946816	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68690	(Get FASTA)	NCBI Sequence Viewer
	D4A208	(Get FASTA)	NCBI Sequence Viewer
	EDM09828	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008976.5
	ENSRNOP00000068925.1
	ENSRNOP00000070956.1
	ENSRNOP00000078553.1
	ENSRNOP00055028360
	ENSRNOP00060020475
	ENSRNOP00065025918

RefSeq Acc Id:	NP_001128430 ⟸ NM_001134958
- Peptide Label:	isoform 2
- UniProtKB:	B5DEJ1 (UniProtKB/TrEMBL), A0A8I5ZL53 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSPAKFKKDKEIIAEYDTQVKEIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYS RNLEKLAERFLAKTRSTKDQQFKKDQNVLSPVNCWNLLLNQVKRESRDHTTLSDIYLNNIIPRF VQVSEDSGRLFKKSKEVGQQLQDDLMKVLNELYSVMKTYHMYNADSISAQSKLKEAEKQEEKQI GKSVKQEDRQTPRSPDSTANVRIEEKHVRRSSVKKIEKMKEKRQAKYTENKLKAIKARNEYLLA LEATNASVFKYYIHDLSDIIDQCCDLGYHASLNRALRTFLSAELNLEQSKHEGLDAIENAVENL DATSDKQRLMEMYNNVFCPPMKFEFQPHMGDMASQLCAQQPVQSELVQRRQQLQSRLSTLKIEN EEVKKTMEATLQTIQDIVTVEDFDVSDCFQYSNSMESVKSTVSETFMSKPSIAKRRANQQETEQ FYFTKMKEYLEGRNLITKLQAKHDLLQKTLGESQRTDCSLARRSSTVRKQDSSQAIPLVVESCI RFISRHGLRHEGVFRVSGSQVEVNDIKNAFERGEDPLAGDQNDHDMDSIAGVLKLYFRGLEHPL FPKDIFHDLIACVTMDNLQERAVHIRKVLLVLPKPTLIIMRYLFAFLNHLSQFSEENMMDPYNL AICFGPSLMSVPEGHDQVSCQAHVNELIKTIIIQHENIFPNPRELEGPIYSRGGSMEDYCDSTH GETISAEDSTQDVTAEHHTSDDECEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEG RHNGIDGLIPHQYIVVQDTEDGVVERSSPKSEIEVMSEPPEEKVTARTGASCPSGGHVADIYLA NINKGIPRSPAHELPPPQEALRLLEN hide sequence

RefSeq Acc Id:	XP_006249845 ⟸ XM_006249783
- Peptide Label:	isoform X1
- UniProtKB:	D4A208 (UniProtKB/Swiss-Prot), A0A8I5ZL53 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSPAKFKKDKEIIAEYDTQVKEIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYS RNLEKLAERFLAKTRSTKDQQFKKDQNVLSPVNCWNLLLNQVKRESRDHTTLSDIYLNNIIPRF VQVSEDSGRLFKKSKEVGQQLQDDLMKVLNELYSVMKTYHMYNADSISAQSKLKEAEKQEEKQI GKSVKQEDRQTPRSPDSTANVRIEEKHVRRSSVKKIEKMKEKRQAKYTENKLKAIKARNEYLLA LEATNASVFKYYIHDLSDIIDQCCDLGYHASLNRALRTFLSAELNLEQSKHEGLDAIENAVENL DATSDKQRLMEMYNNVFCPPMKFEFQPHMGDMASQLCAQQPVQSELVQRRQQLQSRLSTLKIEN EEVKKTMEATLQTIQDIVTVEDFDVSDCFQYSNSMESVKSTVSETFMSKPSIAKRRANQQETEQ FYFTKMKEYLEGRNLITKLQAKHDLLQKTLGESQRTDCSLARRSSTVRKQDSSQAIPLVVESCI RFISRHGLRHEGVFRVSGSQVEVNDIKNAFERGEDPLAGDQNDHDMDSIAGVLKLYFRGLEHPL FPKDIFHDLIACVTMDNLQERAVHIRKVLLVLPKPTLIIMRYLFAFLNHLSQFSEENMMDPYNL AICFGPSLMSVPEGHDQVSCQAHVNELIKTIIIQHENIFPNPRELEGPIYSRGGSMEDYCDSTH GETISAEDSTQDVTAEHHTSDDECEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEG RHNGIDGLIPHQYIVVQDTEDGVVERSSPKSEIEVMSEPPEEKVTARTGASCPSGGHVADIYLA NINKQRKRPESGSIRKAFRSDSHGLGSSLTDSSSPGVGASCRPSSQPIMSQNLPKEGPDKCSIS GHGSLNSISRHSSLKNRMDSPQIRKTATAGRSKSFNNHRPMDPEVIAQDIEATMNSALNELQEL ERQSSAKHTPDVVLDTLEPLKTSPVVAPTSEPSSPLHTQLLKDPEPAFQRSASTAGDIACAFRP VKSVKMAAPVKPPATRPKPTVFPKTNATSPGVNSSASPQSTDKSCTV hide sequence

RefSeq Acc Id:	XP_006249847 ⟸ XM_006249785
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZL53 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYKTLVQSTDALATPPIFFNRKDQNVLSPVNCWNLLLNQVKRESRDHTTLSDIYLNNIIPRFVQ VSEDSGRLFKKSKEVGQQLQDDLMKVLNELYSVMKTYHMYNADSISAQSKLKEAEKQEEKQIGK SVKQEDRQTPRSPDSTANVRIEEKHVRRSSVKKIEKMKEKRQAKYTENKLKAIKARNEYLLALE ATNASVFKYYIHDLSDIIDQCCDLGYHASLNRALRTFLSAELNLEQSKHEGLDAIENAVENLDA TSDKQRLMEMYNNVFCPPMKFEFQPHMGDMASQLCAQQPVQSELVQRRQQLQSRLSTLKIENEE VKKTMEATLQTIQDIVTVEDFDVSDCFQYSNSMESVKSTVSETFMSKPSIAKRRANQQETEQFY FTKMKEYLEGRNLITKLQAKHDLLQKTLGESQRTDCSLARRSSTVRKQDSSQAIPLVVESCIRF ISRHGLRHEGVFRVSGSQVEVNDIKNAFERGEDPLAGDQNDHDMDSIAGVLKLYFRGLEHPLFP KDIFHDLIACVTMDNLQERAVHIRKVLLVLPKPTLIIMRYLFAFLNHLSQFSEENMMDPYNLAI CFGPSLMSVPEGHDQVSCQAHVNELIKTIIIQHENIFPNPRELEGPIYSRGGSMEDYCDSTHGE TISAEDSTQDVTAEHHTSDDECEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRH NGIDGLIPHQYIVVQDTEDGVVERSSPKSEIEVMSEPPEEKVTARTGASCPSGGHVADIYLANI NKQRKRPESGSIRKAFRSDSHGLGSSLTDSSSPGVGASCRPSSQPIMSQNLPKEGPDKCSISGH GSLNSISRHSSLKNRMDSPQIRKTATAGRSKSFNNHRPMDPEVIAQDIEATMNSALNELQELER QSSAKHTPDVVLDTLEPLKTSPVVAPTSEPSSPLHTQLLKDPEPAFQRSASTAGDIACAFRPVK SVKMAAPVKPPATRPKPTVFPKTNATSPGVNSSASPQSTDKSCTV hide sequence

Ensembl Acc Id:

ENSRNOP00000008976 ⟸ ENSRNOT00000008976

Ensembl Acc Id:

ENSRNOP00000068925 ⟸ ENSRNOT00000085967

Ensembl Acc Id:

ENSRNOP00000070956 ⟸ ENSRNOT00000086928

RefSeq Acc Id:	XP_038946812 ⟸ XM_039090884
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZL53 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946815 ⟸ XM_039090887
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZL53 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946813 ⟸ XM_039090885
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JZ92 (UniProtKB/TrEMBL), A0A8I5ZL53 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946814 ⟸ XM_039090886
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZL53 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946816 ⟸ XM_039090888
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZL53 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000078553 ⟸ ENSRNOT00000118487

RefSeq Acc Id:	NP_001388305 ⟸ NM_001401376
- Peptide Label:	isoform 1
- UniProtKB:	D4A208 (UniProtKB/Swiss-Prot), A0A8I5ZL53 (UniProtKB/TrEMBL)

Protein Domains

F-BAR Rho-GAP SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A208-F1-model_v2	AlphaFold	D4A208	1-1071	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698796

Promoter ID:

EPDNEW_R9321

Type:

initiation region

Name:

Srgap2_1

Description:

SLIT-ROBO Rho GTPase activating protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	48,286,702 - 48,286,762	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566016	AgrOrtholog
BioCyc Gene	G2FUF-18352	BioCyc
Ensembl Genes	ENSRNOG00000006733	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055020451	UniProtKB/Swiss-Prot
	ENSRNOG00060014960	UniProtKB/Swiss-Prot
	ENSRNOG00065019261	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000008976.6	UniProtKB/TrEMBL
	ENSRNOT00000085967.2	UniProtKB/Swiss-Prot
	ENSRNOT00000086928.2	UniProtKB/TrEMBL
	ENSRNOT00000118487.1	UniProtKB/TrEMBL
	ENSRNOT00055034950	UniProtKB/Swiss-Prot
	ENSRNOT00060025648	UniProtKB/Swiss-Prot
	ENSRNOT00065032469	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.555.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	1.20.1270.60	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	AH/BAR_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	F_BAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FCH_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Rho_GTPase_activation_prot	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RhoGAP_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SLIT-ROBO_RhoGAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	srGAP1/2/3_SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	360840	ENTREZGENE
PANTHER	PTHR14166:SF6	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	FCH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RhoGAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Srgap2	PhenoGen
PROSITE	F_BAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RHOGAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006733	RatGTEx
	ENSRNOG00055020451	RatGTEx
	ENSRNOG00060014960	RatGTEx
	ENSRNOG00065019261	RatGTEx
SMART	FCH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RhoGAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF103657	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF48350	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF50044	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JZ92	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZL53	ENTREZGENE, UniProtKB/TrEMBL
	B5DEJ1	ENTREZGENE, UniProtKB/TrEMBL
	D4A208	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-02	Srgap2	SLIT-ROBO Rho GTPase activating protein 2	RGD1566016	similar to KIAA0456 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1566016	similar to KIAA0456 protein	RGD1566016_predicted	similar to KIAA0456 protein (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1566016_predicted	similar to KIAA0456 protein (predicted)	LOC360840	similar to KIAA0456 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC360840	similar to KIAA0456 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar