Lrrn2 (leucine rich repeat neuronal 2) - Rat Genome Database

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Gene: Lrrn2 (leucine rich repeat neuronal 2) Rattus norvegicus
Analyze
Symbol: Lrrn2
Name: leucine rich repeat neuronal 2
RGD ID: 1305482
Description: Predicted to be located in membrane. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human LRRN2 (leucine rich repeat neuronal 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; bisphenol A; methoxychlor.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: leucine rich repeat protein 2, neuronal; leucine-rich repeat neuronal protein 2; LOC289020
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81346,874,048 - 46,934,544 (+)NCBIGRCr8
mRatBN7.21344,321,944 - 44,382,454 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1344,321,364 - 44,382,482 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1346,928,913 - 46,989,187 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01348,217,024 - 48,277,296 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,477,737 - 45,538,047 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01349,660,356 - 49,730,275 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1349,660,356 - 49,730,275 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01354,735,286 - 54,801,198 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41345,835,522 - 45,837,774 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11345,849,460 - 45,852,366 (+)NCBI
Celera1344,656,211 - 44,716,704 (+)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Lrrn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81346,874,048 - 46,934,544 (+)NCBIGRCr8
mRatBN7.21344,321,944 - 44,382,454 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1344,321,364 - 44,382,482 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1346,928,913 - 46,989,187 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01348,217,024 - 48,277,296 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,477,737 - 45,538,047 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01349,660,356 - 49,730,275 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1349,660,356 - 49,730,275 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01354,735,286 - 54,801,198 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41345,835,522 - 45,837,774 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11345,849,460 - 45,852,366 (+)NCBI
Celera1344,656,211 - 44,716,704 (+)NCBICelera
Cytogenetic Map13q13NCBI
LRRN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381204,617,170 - 204,685,738 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1204,617,170 - 204,685,738 (-)EnsemblGRCh38hg38GRCh38
GRCh371204,586,298 - 204,654,866 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361202,852,924 - 202,921,220 (-)NCBINCBI36Build 36hg18NCBI36
Celera1177,721,461 - 177,789,729 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1175,751,543 - 175,819,947 (-)NCBIHuRef
CHM1_11206,009,687 - 206,077,989 (-)NCBICHM1_1
T2T-CHM13v2.01203,881,574 - 203,950,138 (-)NCBIT2T-CHM13v2.0
Lrrn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,808,093 - 132,867,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,808,011 - 132,867,743 (+)EnsemblGRCm39 Ensembl
GRCm381132,880,355 - 132,940,005 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,880,273 - 132,940,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv371134,776,932 - 134,836,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,707,901 - 134,767,505 (+)NCBIMGSCv36mm8
Celera1135,489,048 - 135,548,797 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.69NCBI
Lrrn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540640,442,680 - 40,499,945 (-)NCBIChiLan1.0ChiLan1.0
LRRN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2144,692,157 - 44,760,682 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1144,657,361 - 44,729,059 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01180,208,932 - 180,287,250 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11184,506,640 - 184,554,276 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,507,321 - 184,509,462 (-)Ensemblpanpan1.1panPan2
LRRN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1381,163,974 - 1,218,069 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl381,164,664 - 1,166,802 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha381,258,548 - 1,320,041 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0381,159,406 - 1,220,934 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1381,156,215 - 1,217,700 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0381,547,119 - 1,608,604 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0381,747,852 - 1,809,364 (-)NCBIUU_Cfam_GSD_1.0
Lrrn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934470,975,220 - 70,979,318 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936567210,862 - 214,526 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl965,279,485 - 65,352,945 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1965,279,480 - 65,352,792 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2971,613,109 - 71,666,271 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12524,660,036 - 24,727,653 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2524,724,833 - 24,726,974 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605525,417,767 - 25,485,807 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248076,376,669 - 6,436,809 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lrrn2
364 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:67
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000012844
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
2303032Bp328Blood pressure QTL 328arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134118402245417941Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134343790447841255Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134372077062022792Rat

Markers in Region
D13Got22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2593,541,170 - 93,542,503 (+)MAPPERmRatBN7.2
Rnor_6.01349,720,575 - 49,720,682NCBIRnor6.0
Rnor_6.0596,601,805 - 96,603,137NCBIRnor6.0
Rnor_5.05100,631,702 - 100,633,034UniSTSRnor5.0
Rnor_5.01354,791,498 - 54,791,605UniSTSRnor5.0
RGSC_v3.4597,701,780 - 97,703,112UniSTSRGSC3.4
RGSC_v3.41345,828,608 - 45,828,716RGDRGSC3.4
RGSC_v3.41345,828,609 - 45,828,716UniSTSRGSC3.4
RGSC_v3.11345,842,652 - 45,842,759RGD
Celera1344,707,006 - 44,707,111UniSTS
Celera592,175,218 - 92,176,550UniSTS
RH 3.4 Map13114.1RGD
RH 3.4 Map13114.1UniSTS
RH 2.0 Map13398.3RGD
Cytogenetic Map13q13UniSTS
RH142373  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21344,382,223 - 44,382,389 (+)MAPPERmRatBN7.2
Rnor_6.01349,730,045 - 49,730,210NCBIRnor6.0
Rnor_5.01354,800,968 - 54,801,133UniSTSRnor5.0
RGSC_v3.41345,838,079 - 45,838,244UniSTSRGSC3.4
Celera1344,716,474 - 44,716,639UniSTS
RH 3.4 Map13114.3UniSTS
Cytogenetic Map13q13UniSTS
BF386712  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21344,331,238 - 44,331,388 (+)MAPPERmRatBN7.2
Rnor_6.01349,673,621 - 49,673,770NCBIRnor6.0
Rnor_5.01354,744,817 - 54,744,966UniSTSRnor5.0
RGSC_v3.41345,786,944 - 45,787,093UniSTSRGSC3.4
Celera1344,665,402 - 44,665,551UniSTS
RH 3.4 Map13113.2UniSTS
Cytogenetic Map13q13UniSTS
RH137657  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21344,326,979 - 44,327,131 (+)MAPPERmRatBN7.2
Rnor_6.01349,665,394 - 49,665,545NCBIRnor6.0
Rnor_5.01354,740,324 - 54,740,475UniSTSRnor5.0
RGSC_v3.41345,782,669 - 45,782,820UniSTSRGSC3.4
Celera1344,661,172 - 44,661,323UniSTS
Cytogenetic Map13q13UniSTS
BF390705  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21344,337,471 - 44,337,651 (+)MAPPERmRatBN7.2
Rnor_6.01349,679,855 - 49,680,034NCBIRnor6.0
Rnor_5.01354,751,051 - 54,751,230UniSTSRnor5.0
RGSC_v3.41345,793,176 - 45,793,355UniSTSRGSC3.4
Celera1344,671,634 - 44,671,813UniSTS
RH 3.4 Map13201.5UniSTS
Cytogenetic Map13q13UniSTS
BE117324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21344,357,793 - 44,357,956 (+)MAPPERmRatBN7.2
Rnor_6.01349,705,889 - 49,706,051NCBIRnor6.0
Rnor_5.01354,776,812 - 54,776,974UniSTSRnor5.0
RGSC_v3.41345,813,653 - 45,813,815UniSTSRGSC3.4
Celera1344,692,044 - 44,692,206UniSTS
RH 3.4 Map13114.5UniSTS
Cytogenetic Map13q13UniSTS
Lrrn2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21344,379,825 - 44,380,717 (+)MAPPERmRatBN7.2
Rnor_6.01349,727,647 - 49,728,538NCBIRnor6.0
Rnor_5.01354,798,570 - 54,799,461UniSTSRnor5.0
RGSC_v3.41345,835,681 - 45,836,572UniSTSRGSC3.4
Celera1344,714,076 - 44,714,967UniSTS
Cytogenetic Map13q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 74 5
Low 3 30 14 6 6 2 4 33 28 10 2
Below cutoff 13 18 10 18 10 6 7 2 4 1 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000012844   ⟹   ENSRNOP00000012844
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1344,360,176 - 44,382,454 (+)Ensembl
Rnor_6.0 Ensembl1349,660,356 - 49,730,275 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094247   ⟹   ENSRNOP00000076724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1344,353,807 - 44,382,482 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104555   ⟹   ENSRNOP00000090401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1344,360,072 - 44,382,482 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106270   ⟹   ENSRNOP00000097330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1344,321,364 - 44,382,482 (+)Ensembl
RefSeq Acc Id: NM_001177368   ⟹   NP_001170839
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,874,048 - 46,934,544 (+)NCBI
mRatBN7.21344,321,944 - 44,382,454 (+)NCBI
Rnor_6.01349,660,356 - 49,730,275 (+)NCBI
Rnor_5.01354,735,286 - 54,801,198 (+)NCBI
Celera1344,656,211 - 44,716,704 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063272072   ⟹   XP_063128142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,905,910 - 46,934,544 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001170839 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128142 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM09783 (Get FASTA)   NCBI Sequence Viewer  
  EDM09784 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000012844.5
  ENSRNOP00000076724.1
  ENSRNOP00000090401.1
  ENSRNOP00000097330
  ENSRNOP00000097330.1
Reference Protein Sequences
RefSeq Acc Id: NP_001170839   ⟸   NM_001177368
- Peptide Label: precursor
- UniProtKB: D3ZAV8 (UniProtKB/TrEMBL),   A6IC64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000012844   ⟸   ENSRNOT00000012844
RefSeq Acc Id: ENSRNOP00000076724   ⟸   ENSRNOT00000094247
RefSeq Acc Id: ENSRNOP00000090401   ⟸   ENSRNOT00000104555
RefSeq Acc Id: ENSRNOP00000097330   ⟸   ENSRNOT00000106270
RefSeq Acc Id: XP_063128142   ⟸   XM_063272072
- Peptide Label: isoform X1
Protein Domains
Fibronectin type-III   Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAV8-F1-model_v2 AlphaFold D3ZAV8 1-750 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698817
Promoter ID:EPDNEW_R9341
Type:single initiation site
Name:Lrrn2_1
Description:leucine rich repeat neuronal 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01349,660,397 - 49,660,457EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305482 AgrOrtholog
BioCyc Gene G2FUF-18303 BioCyc
Ensembl Genes ENSRNOG00000009691 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012844.6 UniProtKB/TrEMBL
  ENSRNOT00000094247.1 UniProtKB/TrEMBL
  ENSRNOT00000104555.1 UniProtKB/TrEMBL
  ENSRNOT00000106270 ENTREZGENE
  ENSRNOT00000106270.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  FN_III UniProtKB/TrEMBL
  Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
KEGG Report rno:289020 UniProtKB/TrEMBL
NCBI Gene 289020 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT NEURONAL PROTEIN 2 UniProtKB/TrEMBL
  SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PhenoGen Lrrn2 PhenoGen
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009691 RatGTEx
SMART IGc2 UniProtKB/TrEMBL
  LRR_SD22 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A6IC64 ENTREZGENE, UniProtKB/TrEMBL
  D3ZAV8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-18 Lrrn2  leucine rich repeat neuronal 2  Lrrn2  leucine rich repeat protein 2, neuronal   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Lrrn2  leucine rich repeat protein 2, neuronal   Lrrn2_predicted  leucine rich repeat protein 2, neuronal (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Lrrn2_predicted  leucine rich repeat protein 2, neuronal (predicted)      Symbol and Name status set to approved 70820 APPROVED