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Gene: Ascl5 (achaete-scute family bHLH transcription factor 5) Rattus norvegicus
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Symbol: Ascl5
Name: achaete-scute family bHLH transcription factor 5
Description: Predicted to contribute to DNA-binding transcription factor activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to localize to the RNA polymerase II transcription factor complex. Orthologous to human ASCL5 (achaete-scute family bHLH transcription factor 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: achaete-scute complex homolog 5; achaete-scute complex homolog 5 (Drosophila); achaete-scute homolog 5; LOC363991; RGD1561854; similar to class II basic helix-loop-helix protein
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01352,887,055 - 52,888,603 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,887,649 - 52,888,215 (+)Ensembl
Rnor_5.01357,942,911 - 57,944,532 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41349,093,924 - 49,094,490 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1347,807,250 - 47,808,798 (+)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Ascl5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1561854
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.