Xpr1 (xenotropic and polytropic retrovirus receptor 1) - Rat Genome Database

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Gene: Xpr1 (xenotropic and polytropic retrovirus receptor 1) Rattus norvegicus
Analyze
Symbol: Xpr1
Name: xenotropic and polytropic retrovirus receptor 1
RGD ID: 1306554
Description: Predicted to enable several functions, including inositol hexakisphosphate binding activity; phosphate ion transmembrane transporter activity; and virus receptor activity. Predicted to be involved in cellular phosphate ion homeostasis; cellular response to phosphate starvation; and phosphate ion transmembrane transport. Predicted to act upstream of or within response to virus and viral entry into host cell. Predicted to be intrinsic component of plasma membrane. Predicted to be active in Golgi apparatus and plasma membrane. Human ortholog(s) of this gene implicated in basal ganglia calcification. Orthologous to human XPR1 (xenotropic and polytropic retrovirus receptor 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC108353304; LOC289424; SLC53A1; solute carrier family 53 member 1; uncharacterized LOC108353304
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21367,441,205 - 67,585,950 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1367,446,380 - 67,585,946 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1370,031,420 - 70,170,892 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01371,345,003 - 71,484,322 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01368,606,282 - 68,745,687 (-)NCBIRnor_WKY
Rnor_6.01372,918,552 - 73,056,785 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1372,918,490 - 73,056,875 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01377,853,049 - 77,991,192 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41370,238,356 - 70,379,254 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11370,252,050 - 70,393,440 (-)NCBI
Celera1367,321,277 - 67,459,182 (-)NCBICelera
Cytogenetic Map13q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9988277   PMID:12477932   PMID:20068231   PMID:23791524   PMID:27080106  


Genomics

Comparative Map Data
Xpr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21367,441,205 - 67,585,950 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1367,446,380 - 67,585,946 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1370,031,420 - 70,170,892 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01371,345,003 - 71,484,322 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01368,606,282 - 68,745,687 (-)NCBIRnor_WKY
Rnor_6.01372,918,552 - 73,056,785 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1372,918,490 - 73,056,875 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01377,853,049 - 77,991,192 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41370,238,356 - 70,379,254 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11370,252,050 - 70,393,440 (-)NCBI
Celera1367,321,277 - 67,459,182 (-)NCBICelera
Cytogenetic Map13q21NCBI
XPR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381180,632,022 - 180,890,279 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1180,632,022 - 180,890,279 (+)EnsemblGRCh38hg38GRCh38
GRCh371180,601,158 - 180,859,415 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361178,867,796 - 179,122,103 (+)NCBINCBI36Build 36hg18NCBI36
Build 341177,332,829 - 177,587,136NCBI
Celera1153,708,013 - 153,966,433 (+)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1151,831,599 - 152,090,309 (+)NCBIHuRef
CHM1_11182,022,943 - 182,282,207 (+)NCBICHM1_1
T2T-CHM13v2.01179,987,035 - 180,245,477 (+)NCBIT2T-CHM13v2.0
Xpr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,151,403 - 155,293,190 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1155,151,447 - 155,293,161 (-)EnsemblGRCm39 Ensembl
GRCm381155,275,657 - 155,417,444 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,275,701 - 155,417,415 (-)EnsemblGRCm38mm10GRCm38
MGSCv371157,122,787 - 157,264,574 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361157,037,875 - 157,179,662 (-)NCBIMGSCv36mm8
Celera1157,707,719 - 157,849,217 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map166.49NCBI
Xpr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540619,797,245 - 19,974,911 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540619,831,398 - 19,980,994 (+)NCBIChiLan1.0ChiLan1.0
XPR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11159,789,973 - 160,035,390 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,790,170 - 160,029,208 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01156,121,029 - 156,367,565 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
XPR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1714,165,608 - 14,379,822 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl714,165,608 - 14,379,822 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha713,743,229 - 13,957,574 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0713,892,765 - 14,107,009 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl713,892,765 - 14,107,009 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1713,802,993 - 14,017,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0713,909,599 - 14,123,996 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0714,033,984 - 14,247,810 (+)NCBIUU_Cfam_GSD_1.0
Xpr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934490,610,564 - 90,755,079 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364818,462,714 - 8,601,824 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XPR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9122,237,957 - 122,458,171 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19122,237,954 - 122,461,669 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29134,232,141 - 134,329,949 (-)NCBISscrofa10.2Sscrofa10.2susScr3
XPR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12548,509,854 - 48,756,479 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2548,517,525 - 48,756,458 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605549,895,017 - 50,147,454 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xpr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624771942,036 - 1,141,286 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624771941,835 - 1,147,314 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
AW531572  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21367,497,408 - 67,497,559 (+)MAPPERmRatBN7.2
Rnor_6.01372,969,290 - 72,969,440NCBIRnor6.0
Rnor_5.01377,903,787 - 77,903,937UniSTSRnor5.0
RGSC_v3.41370,289,383 - 70,289,533UniSTSRGSC3.4
Celera1367,372,130 - 67,372,280UniSTS
RH 3.4 Map13359.2UniSTS
Cytogenetic Map13q21UniSTS
BQ201960  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21367,577,894 - 67,578,068 (+)MAPPERmRatBN7.2
Rnor_6.01373,049,350 - 73,049,523NCBIRnor6.0
Rnor_5.01377,983,719 - 77,983,892UniSTSRnor5.0
RGSC_v3.41370,371,153 - 70,371,326UniSTSRGSC3.4
Celera1367,451,344 - 67,451,517UniSTS
RH 3.4 Map13358.7UniSTS
Cytogenetic Map13q21UniSTS
AW531572  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21367,497,333 - 67,497,430 (+)MAPPERmRatBN7.2
Rnor_6.01372,969,215 - 72,969,311NCBIRnor6.0
Rnor_5.01377,903,712 - 77,903,808UniSTSRnor5.0
RGSC_v3.41370,289,308 - 70,289,404UniSTSRGSC3.4
Celera1367,372,055 - 67,372,151UniSTS
RH 3.4 Map13359.2UniSTS
Cytogenetic Map13q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
2303028Bp329Blood pressure QTL 329arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135849787273485113Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)135949252277046890Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:41
Interacting mature miRNAs:51
Transcripts:ENSRNOT00000000049
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 28 20 4 19 4 6 6 74 35 41 11 6
Low 1 15 37 37 37 2 5 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000000049   ⟹   ENSRNOP00000000049
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1367,446,380 - 67,585,855 (-)Ensembl
Rnor_6.0 Ensembl1372,918,490 - 73,056,765 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081892   ⟹   ENSRNOP00000070462
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1367,446,380 - 67,512,336 (-)Ensembl
Rnor_6.0 Ensembl1372,918,577 - 73,055,631 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093410
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1367,446,380 - 67,585,946 (-)Ensembl
Rnor_6.0 Ensembl1372,951,359 - 73,056,875 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108645   ⟹   ENSRNOP00000088775
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1367,447,566 - 67,585,855 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113923   ⟹   ENSRNOP00000090084
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1367,446,380 - 67,585,855 (-)Ensembl
RefSeq Acc Id: NM_001105992   ⟹   NP_001099462
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,446,380 - 67,585,855 (-)NCBI
Rnor_6.01372,918,552 - 73,056,785 (-)NCBI
Rnor_5.01377,853,049 - 77,991,192 (-)NCBI
RGSC_v3.41370,238,356 - 70,379,254 (-)RGD
Celera1367,321,277 - 67,459,182 (-)RGD
Sequence:
RefSeq Acc Id: XM_039090615   ⟹   XP_038946543
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,441,205 - 67,585,950 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001099462 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946543 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI61992 (Get FASTA)   NCBI Sequence Viewer  
  EDM09509 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001099462   ⟸   NM_001105992
- UniProtKB: G3V602 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000000049   ⟸   ENSRNOT00000000049
RefSeq Acc Id: ENSRNOP00000070462   ⟸   ENSRNOT00000081892
RefSeq Acc Id: XP_038946543   ⟸   XM_039090615
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXZ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000090084   ⟸   ENSRNOT00000113923
RefSeq Acc Id: ENSRNOP00000088775   ⟸   ENSRNOT00000108645
Protein Domains
EXS   SPX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V602-F1-model_v2 AlphaFold G3V602 1-696 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698911
Promoter ID:EPDNEW_R9431
Type:multiple initiation site
Name:Xpr1_1
Description:xenotropic and polytropic retrovirus receptor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01373,056,869 - 73,056,929EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
13 72929325 72929326 T C snv CDS
13 72929346 72929347 C T snv FHH/EurMcwi (MCW), CDS, CDR
13 72929349 72929350 G A snv CDR, FHL/EurMcwi (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), SBH/Ygl (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), CDS
13 72929352 72929353 G A snv CDS
13 72929366 72929367 C A snv SR/JrHsd (MCW), SBN/Ygl (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), CDS, FHL/EurMcwi (MCW), SBH/Ygl (MCW), SS/JrHsdMcwi (MCW), CDR
13 72929378 72929379 T C snv CDR, CDS, SS/JrHsdMcwi (MCW)
13 72929387 72929388 C A snv SBH/Ygl (MCW)
13 72929388 72929389 C T snv CDR, CDS, ACI/EurMcwi (MCW)
13 72929391 72929392 A G snv SS/JrHsdMcwi (MCW), SBN/Ygl (MCW), CDS, CDR
13 72929397 72929398 T A snv SBH/Ygl (MCW)
13 72929406 72929407 C A snv SBH/Ygl (MCW), FHH/EurMcwi (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (MCW), CDS, CDR, SR/JrHsd (MCW)
13 72929408 72929409 C A snv CDR, CDS
13 72929410 72929411 G C snv SBN/Ygl (MCW)
13 72929417 72929418 G C snv SBH/Ygl (MCW)
13 72929426 72929427 G T snv ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), CDR, CDS, SBN/Ygl (MCW)
13 72929448 72929449 C A snv CDS, CDR
13 72929451 72929452 A T snv CDR
13 72929459 72929460 A C snv SS/JrHsdMcwi (MCW)
13 72929466 72929467 C T snv CDR, CDS, SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
13 77863843 77863844 C T snv BUF/MNa (KyushuU), RCS/Kyo (KyushuU), DOB/Oda (KyushuU), ZF (KyushuU), HTX/Kyo (KyushuU)
13 77863846 77863847 G A snv LEC/Tj (KyushuU), ZFDM (KyushuU), ZF (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), DOB/Oda (KyushuU), F344/Jcl (KyushuU), HWY/Slc (KyushuU), F344/Stm (KyushuU), IS-Tlk/Kyo (KyushuU), RCS/Kyo (KyushuU), BN/SsNSlc (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU), NIG-III/Hok (KyushuU), BUF/MNa (KyushuU), IS/Kyo (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), SR/JrHsd (MCW), FHL/EurMcwi (MCW)
13 77863855 77863856 T A snv IS-Tlk/Kyo (KyushuU), HTX/Kyo (KyushuU)
13 77863855 77863856 T C snv F344/NSlc (KyushuU), IS/Kyo (KyushuU), BUF/MNa (KyushuU)
13 77863863 77863864 C A snv IS-Tlk/Kyo (KyushuU), RCS/Kyo (KyushuU), BN/SsNSlc (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU), NIG-III/Hok (KyushuU), BUF/MNa (KyushuU), IS/Kyo (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), ZFDM (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), ZF (KyushuU)
13 77863863 77863864 C T snv F344/Stm (KyushuU)
13 77863875 77863876 T C snv LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
13 77863888 77863889 A G snv LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
13 77863905 77863906 C A snv LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
13 77863945 77863946 C A snv LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
13 77863948 77863949 A T snv LEC/Tj (KyushuU)
13 77863951 77863952 G T snv LE/OrlBarth (UDEL)
13 77863963 77863964 C T snv IS/Kyo (KyushuU), F344/NSlc (KyushuU)
13 77881712 77881713 C G snv NIG-III/Hok (KyushuU)
13 77883148 77883149 A T snv FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), ACI/EurMcwi (MCW), SR/JrHsd (MCW)
13 77883163 77883164 C G snv SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL)
13 77883176 77883177 C T snv LE/OrlBarth (UDEL)
13 77883184 77883185 C A snv Crl:SD (UDEL), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL)
13 77883191 77883192 C A snv Crl:SD (UDEL)
13 77883217 77883218 G A snv Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
13 77883220 77883221 G C snv LE/OrlBarth (UDEL)
13 77883229 77883230 C T snv SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL)
13 77886771 77886772 G A snv IS-Tlk/Kyo (KyushuU)
13 77886777 77886778 G A snv ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL), IS/Kyo (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), BN/SsNSlc (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), ZF (KyushuU), ZFDM (KyushuU)
13 77886803 77886804 A G snv HWY/Slc (KyushuU), F344/Stm (KyushuU), IS-Tlk/Kyo (KyushuU), BN/SsNSlc (KyushuU), F344/NSlc (KyushuU), LEC/Tj (KyushuU), BUF/MNa (KyushuU), ZFDM (KyushuU), ZF (KyushuU), DOB/Oda (KyushuU), F344/Jcl (KyushuU), F344/DuCrlCrlj (KyushuU)
13 77886812 77886813 G T snv F344/DuCrlCrlj (KyushuU), NIG-III/Hok (KyushuU), BUF/MNa (KyushuU), IS/Kyo (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LE/Stm (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), SDLEF7/Barth (UDEL), ZFDM (KyushuU), ZF (KyushuU)
13 77886815 77886816 G T snv LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
13 77886818 77886819 T A snv Crl:SD (UDEL)
13 77886824 77886825 A G snv SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL)
13 77886848 77886849 A G snv LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), Crl:SD (UDEL)
13 77886857 77886858 G A snv SDLEF7/Barth (UDEL)
13 77886858 77886859 G A snv FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL), SS/JrHsdMcwi (MCW)
13 77886867 77886868 A T snv Crl:SD (UDEL), SDLEF7/Barth (UDEL)
13 77886903 77886904 C G snv LE/OrlBarth (UDEL), ZF (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX/NemOda (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), HWY/Slc (KyushuU), F344/Stm (KyushuU), IS-Tlk/Kyo (KyushuU), RCS/Kyo (KyushuU), BN/SsNSlc (KyushuU), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), SDLEF7/Barth (UDEL), ZFDM (KyushuU), Crl:SD (UDEL), IS/Kyo (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU)
13 77886910 77886911 G T snv ZFDM (KyushuU), BN/SsNSlc (KyushuU), NIG-III/Hok (KyushuU)
13 77886923 77886924 A G snv F344/DuCrlCrlj (KyushuU)
13 77886930 77886931 C T snv ZFDM (KyushuU), ZF (KyushuU), BUF/MNa (KyushuU), BN/SsNSlc (KyushuU)
13 77886938 77886939 C T snv BDIX.Cg-Tal/NemOda (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), NIG-III/Hok (KyushuU)
13 77887256 77887257 G C snv SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL)
13 77887260 77887261 C G snv Crl:SD (UDEL)
13 77887269 77887270 C A snv IS/Kyo (KyushuU)
13 77887269 77887270 C G snv SDLEF7/Barth (UDEL)
13 77887282 77887283 G T snv F344/DuCrlCrlj (KyushuU)
13 77887283 77887284 G A snv HWY/Slc (KyushuU), IS-Tlk/Kyo (KyushuU), BN/SsNSlc (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), BUF/MNa (KyushuU), IS/Kyo (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), SBN/Ygl (MCW), SBH/Ygl (MCW), F344/Jcl (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), ZFDM (KyushuU), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW)
13 77887292 77887293 C G snv Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
13 77887296 77887297 G C snv SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL), NIG-III/Hok (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), BN/SsNSlc (KyushuU), RCS/Kyo (KyushuU), HWY/Slc (KyushuU), F344/Jcl (KyushuU), LE/Stm (KyushuU)
13 77887297 77887298 A C snv F344/DuCrlCrlj (KyushuU), NIG-III/Hok (KyushuU), BUF/MNa (KyushuU), IS/Kyo (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU), ZFDM (KyushuU), ZF (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), HWY/Slc (KyushuU), F344/Jcl (KyushuU), DOB/Oda (KyushuU)
13 77887298 77887299 T C snv LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), Crl:SD (UDEL)
13 77887303 77887304 A T snv Crl:SD (UDEL)
13 77887304 77887305 C T snv LE/OrlBarth (UDEL), Crl:SD (UDEL)
13 77887310 77887311 T G snv BUF/MNa (KyushuU), ZFDM (KyushuU), ZF (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), DOB/Oda (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), HWY/Slc (KyushuU), F344/Stm (KyushuU), IS-Tlk/Kyo (KyushuU), RCS/Kyo (KyushuU), BN/SsNSlc (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL), IS/Kyo (KyushuU), NIG-III/Hok (KyushuU)
13 77887313 77887314 C G snv LE/OrlBarth (UDEL), Crl:SD (UDEL), SDLEF7/Barth (UDEL)
13 77887325 77887326 T C snv Crl:SD (UDEL)
13 77887326 77887327 C A snv SDLEF7/Barth (UDEL)
13 77887330 77887331 C A snv F344/NSlc (KyushuU)
13 77887330 77887331 C T snv SDLEF7/Barth (UDEL), Crl:SD (UDEL), LE/OrlBarth (UDEL)
13 77887331 77887332 C A snv SDLEF7/Barth (UDEL)
13 77887334 77887335 A T snv SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL)
13 77887345 77887346 C A snv Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
13 77887375 77887376 A T snv Crl:SD (UDEL), IS/Kyo (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), BN/SsNSlc (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), ZF (KyushuU), ZFDM (KyushuU), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL)
13 77887385 77887386 G A snv F344/NSlc (KyushuU), ZF (KyushuU), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL), IS/Kyo (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), ZFDM (KyushuU), BN/SsNSlc (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU)
13 77887388 77887389 A C snv Crl:SD (UDEL), LE/OrlBarth (UDEL)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
13 70249153 70249154 G A snv FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW), LCR/2Mco (UMich), ACI/EurMcwi (MCW), SR/JrHsd (MCW), HCR/2Mco (UMich), LCR/1Mco (UMich)
13 70249161 70249162 G T snv FHL/EurMcwi (MCW)
13 70249189 70249190 G A snv FHL/EurMcwi (MCW)
13 70249191 70249192 C T snv FHL/EurMcwi (MCW)
13 70249211 70249212 C A snv LCR/2Mco (UMich), HCR/1Mco (UMich)
13 70249222 70249223 T C snv LCR/2Mco (UMich), HCR/1Mco (UMich)
13 70249255 70249256 A G snv LCR/2Mco (UMich), HCR/1Mco (UMich)
13 70267194 70267195 C G snv BN/NHsdMcwi (KNAW), BUF/N (KNAW), M520/N (KNAW)
13 70268597 70268598 C T snv HCR/1Mco (UMich), LCR/2Mco (UMich)
13 70268606 70268607 C T snv HCR/1Mco (UMich), LCR/1Mco (UMich)
13 70268622 70268623 G T snv FHH/EurMcwi (MCW)
13 70268630 70268631 A T snv HCR/1Mco (UMich), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), LCR/1Mco (UMich), HCR/2Mco (UMich), LCR/2Mco (UMich), SHRSP/Gcrc (MDC)
13 70268655 70268656 G T snv FHL/EurMcwi (MCW)
13 70268658 70268659 C T snv SS/JrHsdMcwi (MCW), HCR/2Mco (UMich), FHH/EurMcwi (MCW), HCR/1Mco (UMich)
13 70268685 70268686 C A snv MR/N (KNAW)
13 70268702 70268703 G C snv FHH/EurMcwi (MCW)
13 70268711 70268712 C G snv ACI/EurMcwi (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW)
13 70272372 70272373 G A snv ACI/EurMcwi (MCW), LCR/2Mco (UMich), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), FHH/EurMcwi (MDC), SHRSP/Gcrc (MDC), SS/JrHsdMcwi (MDC), ACI/N (KNAW), BN/NHsdMcwi (KNAW), BUF/N (KNAW), M520/N (KNAW), WKY/N (KNAW), LCR/1Mco (UMich), HCR/2Mco (UMich), FHH/EurMcwi (MCW)
13 70272398 70272399 A G snv FHL/EurMcwi (MCW), SR/JrHsd (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW)
13 70272407 70272408 G T snv SS/JrHsdMcwi (MCW), ACI/EurMcwi (MCW), SS/JrHsdMcwi (MDC), ACI/N (KNAW), BN/NHsdMcwi (KNAW), BUF/N (KNAW), M520/N (KNAW), WKY/N (KNAW), LCR/1Mco (UMich), HCR/2Mco (UMich), LCR/2Mco (UMich), SR/JrHsd (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), FHH/EurMcwi (MDC)
13 70272441 70272442 A T snv FHL/EurMcwi (MCW)
13 70272453 70272454 G A snv ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), LCR/2Mco (UMich), HCR/2Mco (UMich), LCR/1Mco (UMich), HCR/1Mco (UMich), WKY/N (KNAW), M520/N (KNAW), BUF/N (KNAW), BN/NHsdMcwi (KNAW), ACI/N (KNAW), SS/JrHsdMcwi (MDC), SHRSP/Gcrc (MDC), FHH/EurMcwi (MDC), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), FHL/EurMcwi (MCW)
13 70272498 70272499 C G snv HCR/2Mco (UMich), LCR/2Mco (UMich), HCR/1Mco (UMich), WKY/N (KNAW), M520/N (KNAW), BUF/N (KNAW), BN/NHsdMcwi (KNAW), ACI/N (KNAW), SS/JrHsdMcwi (MDC), SHRSP/Gcrc (MDC), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), LCR/1Mco (UMich)
13 70272518 70272519 A G snv MR/N (KNAW)
13 70272855 70272856 C G snv FHL/EurMcwi (MCW), HCR/1Mco (UMich), LCR/1Mco (UMich), LCR/2Mco (UMich)
13 70272878 70272879 G A snv SHRSP/Gcrc (MDC), LCR/2Mco (UMich), HCR/2Mco (UMich), LCR/1Mco (UMich), HCR/1Mco (UMich), WKY/N (KNAW), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), FHH/EurMcwi (MDC), SS/JrHsdMcwi (MDC), ACI/N (KNAW), BN/NHsdMcwi (KNAW), BUF/N (KNAW)
13 70272887 70272888 C G snv LCR/2Mco (UMich), HCR/1Mco (UMich)
13 70272892 70272893 A T snv LCR/2Mco (UMich), HCR/1Mco (UMich)
13 70272893 70272894 T C snv HCR/1Mco (UMich), LCR/2Mco (UMich)
13 70272905 70272906 T G snv FHH/EurMcwi (MCW), HCR/2Mco (UMich), SHRSP/Gcrc (MDC), SR/JrHsd (MCW), ACI/EurMcwi (MCW)
13 70272937 70272938 A C snv SS/JrHsdMcwi (MCW)
13 70272970 70272971 A T snv SS/JrHsdMcwi (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW)
13 70272980 70272981 G A snv SS/JrHsdMcwi (MCW), FHL/EurMcwi (MCW)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
13 67476623 67476624 C T snv BXH2/CubMcwi (2020), BN/NHsdMcwi (2019), F344/Stm (2019), LEXF11/Stm (2020)
13 67476647 67476648 A T snv LEXF10A/StmMcwi (2020), BXH2/CubMcwi (2020), F344/Stm (2019), FXLE16/Stm (2020), LEXF4/Stm (2020)
13 67476649 67476650 G T snv LEXF10A/StmMcwi (2020), LEXF4/Stm (2020), FXLE16/Stm (2020), F344/Stm (2019), BXH2/CubMcwi (2020)
13 67476656 67476657 A T snv BXH2/CubMcwi (2020), F344/Stm (2019), FXLE16/Stm (2020), LEXF11/Stm (2020), BUF/N (2020), LEXF10A/StmMcwi (2020), LEXF4/Stm (2020)
13 67476671 67476672 C G snv LEXF4/Stm (2020), BXH2/CubMcwi (2020), F344/Stm (2019), FXLE16/Stm (2020), LEXF11/Stm (2020), LEXF2B/Stm (2019), LEXF10A/StmMcwi (2020)
13 67476677 67476678 A T snv LEXF10A/StmMcwi (2020), BXH2/CubMcwi (2020), F344/Stm (2019), FXLE16/Stm (2020), LEXF2B/Stm (2019), LEXF4/Stm (2020)
13 67476684 67476685 C G snv LEXF4/Stm (2020), LEXF2B/Stm (2019), FXLE16/Stm (2020), F344/Stm (2019), F344/N (2020), BXH2/CubMcwi (2020), LEXF10A/StmMcwi (2020)
13 67476691 67476692 C A snv BXH2/CubMcwi (2020), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), LEXF4/Stm (2020), LEXF10A/StmMcwi (2020)
13 67476701 67476702 G C snv LEXF4/Stm (2020), FXLE16/Stm (2020), F344/Stm (2019), F344/N (2020), BXH2/CubMcwi (2020), LEXF10A/StmMcwi (2020)
13 67480399 67480400 G A snv ACI/EurMcwi (2019), WN/N (2020), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2019), BN/SsN (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), M520/NRrrcMcwi (2019), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
13 67480912 67480913 T A snv BN-Lx/CubMcwi (2019), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB20/IpcvMcwi (2020), HXB4/IpcvMcwi (2020), LL/MavRrrcAek (2020), M520/N (2020), WKY/N (2020), WN/N (2020)
13 67480919 67480920 A C snv BN-Lx/CubMcwi (2019), WN/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB31/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEXF11/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), BN/SsN (2020)
13 67480926 67480927 C T snv BN-Lx/CubMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), WKY/NCrl (2019), WKY/N (2020), BN/NHsdMcwi (2020)
13 67480997 67480998 A T snv BN-Lx/CubMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF1A/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), BN/NHsdMcwi (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306554 AgrOrtholog
BioCyc Gene G2FUF-17846 BioCyc
Ensembl Genes ENSRNOG00000000042 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000000049 ENTREZGENE
  ENSRNOP00000000049.5 UniProtKB/TrEMBL
  ENSRNOP00000070462.2 UniProtKB/TrEMBL
  ENSRNOP00000088775.1 UniProtKB/TrEMBL
  ENSRNOP00000090084.1 UniProtKB/TrEMBL
  ENSRNOP00000095690 ENTREZGENE
  ENSRNOP00000095690.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000049 ENTREZGENE
  ENSRNOT00000000049.7 UniProtKB/TrEMBL
  ENSRNOT00000081892.2 UniProtKB/TrEMBL
  ENSRNOT00000093410 ENTREZGENE
  ENSRNOT00000093410.2 UniProtKB/TrEMBL
  ENSRNOT00000108645.1 UniProtKB/TrEMBL
  ENSRNOT00000113923.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9033232 IMAGE-MGC_LOAD
InterPro EXS_C UniProtKB/TrEMBL
  SPX_N UniProtKB/TrEMBL
KEGG Report rno:289424 UniProtKB/TrEMBL
MGC_CLONE MGC:187823 IMAGE-MGC_LOAD
NCBI Gene 289424 ENTREZGENE
Pfam EXS UniProtKB/TrEMBL
  SPX UniProtKB/TrEMBL
PhenoGen Xpr1 PhenoGen
PROSITE EXS UniProtKB/TrEMBL
  SPX UniProtKB/TrEMBL
UniProt A0A0G2JXZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ABE7_RAT UniProtKB/TrEMBL
  A0A8I6ADR6_RAT UniProtKB/TrEMBL
  A0A8I6GL93_RAT UniProtKB/TrEMBL
  B1WC38_RAT UniProtKB/TrEMBL
  G3V602 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Xpr1  xenotropic and polytropic retrovirus receptor 1  LOC108353304  uncharacterized LOC108353304  Data Merged 737654 PROVISIONAL
2016-08-02 LOC108353304  uncharacterized LOC108353304      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Xpr1  xenotropic and polytropic retrovirus receptor 1   Xpr1_predicted  xenotropic and polytropic retrovirus receptor 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Xpr1_predicted  xenotropic and polytropic retrovirus receptor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED