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Gene: Hmcn1 (hemicentin 1) Rattus norvegicus
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Symbol: Hmcn1
Name: hemicentin 1
Description: Predicted to have calcium ion binding activity. Predicted to be involved in response to bacterium and synapse organization. Predicted to localize to several cellular components, including the basement membrane; cell cortex; and neuron projection membrane. Human ortholog(s) of this gene implicated in age related macular degeneration 1. Orthologous to human HMCN1 (hemicentin 1); INTERACTS WITH (+)-schisandrin B; 1,3-dinitrobenzene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hemicentin-1; LOC289094; RGD1564772; similar to OTTHUMP00000065631
Orthologs:
Homo sapiens (human) : HMCN1 (hemicentin 1)  HGNC  Alliance
Mus musculus (house mouse) : Hmcn1 (hemicentin 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hmcn1 (hemicentin 1)
Pan paniscus (bonobo/pygmy chimpanzee) : HMCN1 (hemicentin 1)
Canis lupus familiaris (dog) : HMCN1 (hemicentin 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hmcn1 (hemicentin 1)
Sus scrofa (pig) : HMCN1 (hemicentin 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01367,799,791 - 68,360,664 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1367,799,791 - 68,360,664 (-)Ensembl
Rnor_5.01372,887,371 - 73,322,089 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01372,762,698 - 72,782,812 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41365,296,682 - 65,779,372 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1362,569,267 - 63,028,084 (-)NCBICelera
Cytogenetic Map13q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Hmcn1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1564772
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.