HMCN1 (hemicentin 1) - Rat Genome Database

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Gene: HMCN1 (hemicentin 1) Homo sapiens
Analyze
Symbol: HMCN1
Name: hemicentin 1
RGD ID: 1605323
HGNC Page HGNC:19194
Description: An extracellular matrix structural constituent. Involved in actin cytoskeleton organization. Located in collagen-containing extracellular matrix and extracellular exosome. Implicated in age related macular degeneration 1.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: age-related macular degeneration 1 (senile macular degeneration); ARMD1; FBLN6; FIBL-6; FIBL6; fibulin 6; fibulin-6; hemicentin-1; LOC100507250/HMCN1 fusion
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381185,734,391 - 186,190,949 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1185,734,391 - 186,190,949 (+)EnsemblGRCh38hg38GRCh38
GRCh371185,703,523 - 186,160,081 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361183,970,306 - 184,426,708 (+)NCBINCBI36Build 36hg18NCBI36
Celera1158,814,385 - 159,270,786 (+)NCBICelera
Cytogenetic Map1q25.3-q31.1NCBI
HuRef1156,938,491 - 157,394,637 (+)NCBIHuRef
CHM1_11187,122,845 - 187,579,213 (+)NCBICHM1_1
T2T-CHM13v2.01185,089,079 - 185,545,614 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
HMCN1Humanage related macular degeneration 1  IAGPRGD:104484348554872ClinVar Annotator: match by term: Age related macular degeneration 1ClinVarPMID:25986072
HMCN1Humanage related macular degeneration 1  IAGPRGD:11577575|RGD:11577857|RGD:11578165|RGD:11578430|RGD:11578479|RGD:11578610|RGD:11578689|RGD:11578849|RGD:11578938|RGD:11579167|RGD:11579202|RGD:11579518|RGD:11579652|RGD:11579658|RGD:11579735|RGD:11579773|RGD:11579804|RGD:11579876|RGD:11579907|RGD:11579976|RGD:11580017|RGD:11580091|RGD:11580136|RGD:11580148|RGD:11580175|RGD:11580387|RGD:11580568|RGD:11580619|RGD:11580934|RGD:11580989|RGD:11581047|RGD:11581058|RGD:11581188|RGD:11581219|RGD:11581282|RGD:11581411|RGD:11581569|RGD:11581581|RGD:11581722|RGD:11581800|RGD:11581910|RGD:11582122|RGD:11582197|RGD:11582337|RGD:11647136|RGD:11653722|RGD:11654416|RGD:11658065|RGD:11659130|RGD:11661690|RGD:11663868|RGD:15101684|RGD:15112185|RGD:15123443|RGD:15125564|RGD:15132186|RGD:15139571|RGD:15143474|RGD:151720547|RGD:151743512|RGD:151790048|RGD:151806862|RGD:151807032|RGD:152027184|RGD:152031402|RGD:152038772|RGD:152072868|RGD:152088331|RGD:152091076|RGD:152096575|RGD:152097300|RGD:152103237|RGD:152110147|RGD:152116306|RGD:152116972|RGD:152139749|RGD:152152693|RGD:152165727|RGD:155960263|RGD:156014001|RGD:156034934|RGD:156035842|RGD:156147497|RGD:156204836|RGD:156212410|RGD:156213956|RGD:156227321|RGD:156235059|RGD:156303971|RGD:156310929|RGD:156310948|RGD:156366938|RGD:156439164|RGD:28878252|RGD:28878552|RGD:28878909|RGD:28878913|RGD:28879290|RGD:28879293|RGD:28879614|RGD:28879624|RGD:28879905|RGD:28880208|RGD:28880219|RGD:28880538|RGD:28880874|RGD:28881165|RGD:28881453|RGD:28883249|RGD:28883558|RGD:28883918|RGD:28883921|RGD:28884466|RGD:28884793|RGD:28885091|RGD:28885369|RGD:28885971|RGD:28885974|RGD:28886289|RGD:28886635|RGD:28889672|RGD:28889950|RGD:28889954|RGD:28890193|RGD:28891212|RGD:28891451|RGD:28894439|RGD:288944438554872ClinVar Annotator: match by term: Age related macular degeneration 1 | ClinVar Annotator: match by more ...ClinVarPMID:28492532
HMCN1Humanage related macular degeneration 1  IAGPRGD:11577443|RGD:11577490|RGD:11578289|RGD:11578465|RGD:11578628|RGD:11579098|RGD:11579402|RGD:11579437|RGD:11579848|RGD:11579958|RGD:11580543|RGD:11580885|RGD:11581273|RGD:11581366|RGD:11581888|RGD:11582150|RGD:11582179|RGD:11583694|RGD:11587200|RGD:11593385|RGD:11594445|RGD:11594564|RGD:11595653|RGD:11595977|RGD:11596705|RGD:11598011|RGD:11645396|RGD:11647770|RGD:11647930|RGD:11648980|RGD:11649370|RGD:11651049|RGD:11652061|RGD:11653655|RGD:11655437|RGD:11655591|RGD:11655657|RGD:11655865|RGD:11657114|RGD:11657544|RGD:11657905|RGD:11658034|RGD:11658744|RGD:11658900|RGD:11659510|RGD:11660795|RGD:11661393|RGD:11661636|RGD:11662266|RGD:11662884|RGD:11663263|RGD:11663340|RGD:11663994|RGD:14692947|RGD:28878248|RGD:28878536|RGD:28878540|RGD:28878548|RGD:28878893|RGD:28878898|RGD:28880212|RGD:28880216|RGD:28880523|RGD:28880542|RGD:28880880|RGD:28881173|RGD:28881457|RGD:28883914|RGD:28884462|RGD:28885095|RGD:28885100|RGD:28885104|RGD:28885372|RGD:28886296|RGD:28886936|RGD:28889075|RGD:28889373|RGD:28890189|RGD:28890197|RGD:28890409|RGD:28890942|RGD:28891204|RGD:28891215|RGD:28891719|RGD:28892018|RGD:28892022|RGD:28892027|RGD:28892028|RGD:28893954|RGD:28893962|RGD:28894684|RGD:28894928|RGD:28894931|RGD:28895168|RGD:4057022028554872ClinVar Annotator: match by term: Age related macular degeneration 1ClinVar 
HMCN1Humanage related macular degeneration 1  IAGPRGD:28894922|RGD:28894925|RGD:28894936|RGD:28895175|RGD:28895390|RGD:28895668|RGD:28895861|RGD:28896145|RGD:404977085|RGD:408380181|RGD:86431208554872ClinVar Annotator: match by term: Age related macular degeneration 1 | ClinVar Annotator: match by more ...ClinVarPMID:28492532
HMCN1Humanage related macular degeneration 1  IAGPRGD:11586404|RGD:115905138554872ClinVar Annotator: match by term: Age related macular degeneration 1ClinVarPMID:25741868
HMCN1Humanage related macular degeneration 1  IAGPRGD:11577443|RGD:11577490|RGD:11577857|RGD:11578289|RGD:11578465|RGD:11578628|RGD:11578849|RGD:11579098|RGD:11579402|RGD:11579437|RGD:11579804|RGD:11579848|RGD:11579958|RGD:11580543|RGD:11580885|RGD:11580989|RGD:11581273|RGD:11581366|RGD:11581888|RGD:11581910|RGD:11582150|RGD:11582179|RGD:11582197|RGD:11583694|RGD:11587200|RGD:11593385|RGD:11594445|RGD:11594564|RGD:11595653|RGD:11595977|RGD:11596705|RGD:11598011|RGD:11645396|RGD:11647770|RGD:11647930|RGD:11648980|RGD:11649370|RGD:11651049|RGD:11652061|RGD:11653655|RGD:11653722|RGD:11654416|RGD:11655437|RGD:11655591|RGD:11655657|RGD:11655865|RGD:11657114|RGD:11657544|RGD:11657905|RGD:11658034|RGD:11658744|RGD:11658900|RGD:11659130|RGD:11659510|RGD:11660795|RGD:11661393|RGD:11661636|RGD:11662266|RGD:11662884|RGD:11663263|RGD:11663340|RGD:11663994|RGD:14692947|RGD:28878248|RGD:28878536|RGD:28878540|RGD:28878548|RGD:28878893|RGD:28878898|RGD:28880208|RGD:28880212|RGD:28880216|RGD:28880523|RGD:28880542|RGD:28880880|RGD:28881173|RGD:28881457|RGD:28883914|RGD:28884462|RGD:28884466|RGD:28885095|RGD:28885100|RGD:28885104|RGD:28885372|RGD:28885971|RGD:28886296|RGD:28886936|RGD:28889075|RGD:28889373|RGD:28889954|RGD:28890189|RGD:28890197|RGD:28890409|RGD:28890942|RGD:28891204|RGD:28891215|RGD:28891719|RGD:28892018|RGD:28892022|RGD:28892027|RGD:28892028|RGD:28893954|RGD:28893962|RGD:28894684|RGD:28894928|RGD:28894931|RGD:28895168|RGD:4057022028554872ClinVar Annotator: match by term: Age related macular degeneration 1 | ClinVar Annotator: match by more ...ClinVar 
HMCN1Humanage related macular degeneration 1  IAGPRGD:288917258554872ClinVar Annotator: match by term: Age related macular degeneration 1ClinVarPMID:25133751|PMID:25741868|PMID:28492532
HMCN1Humanage related macular degeneration 1  IAGPRGD:288785448554872ClinVar Annotator: match by term: Age related macular degeneration 1ClinVarPMID:17576681|PMID:25741868|PMID:28492532|PMID:9536098
HMCN1Humanage related macular degeneration 1  IAGPRGD:13445673|RGD:14692948|RGD:150337684|RGD:15105653|RGD:15112628|RGD:15122465|RGD:15155667|RGD:15155672|RGD:15158468|RGD:15159320|RGD:15166950|RGD:151718919|RGD:151724229|RGD:151725193|RGD:151729458|RGD:151731898|RGD:151733719|RGD:151734899|RGD:151735083|RGD:151743370|RGD:151752866|RGD:151754870|RGD:151766533|RGD:151766595|RGD:15176896|RGD:151769027|RGD:151771570|RGD:151775504|RGD:15178095|RGD:151785336|RGD:151799799|RGD:151826591|RGD:151830177|RGD:151840848|RGD:151844984|RGD:151864988|RGD:151873940|RGD:151875814|RGD:151879464|RGD:151881964|RGD:15192163|RGD:15195076|RGD:152068327|RGD:152138774|RGD:152162050|RGD:155901006|RGD:155914196|RGD:155916626|RGD:155926088|RGD:155937849|RGD:155944213|RGD:155956481|RGD:155960001|RGD:155988209|RGD:156008352|RGD:156026144|RGD:156027489|RGD:156030911|RGD:156045998|RGD:156058105|RGD:156072606|RGD:156093054|RGD:156102825|RGD:156105380|RGD:156115588|RGD:156118001|RGD:156129408|RGD:156136060|RGD:156145418|RGD:156155705|RGD:156170980|RGD:156193113|RGD:156193833|RGD:156201356|RGD:156201942|RGD:156238279|RGD:156244222|RGD:156251829|RGD:156276733|RGD:156289547|RGD:156308610|RGD:156310782|RGD:156316611|RGD:156330957|RGD:156331498|RGD:156333608|RGD:156350202|RGD:156356722|RGD:156374650|RGD:156385039|RGD:156407516|RGD:156434564|RGD:156436897|RGD:156446720|RGD:28878902|RGD:28878917|RGD:28879620|RGD:28879910|RGD:28880529|RGD:28880533|RGD:28880885|RGD:28881162|RGD:28881168|RGD:28883253|RGD:28883554|RGD:28883562|RGD:28883908|RGD:28884193|RGD:28884471|RGD:28884475|RGD:28884787|RGD:28885680|RGD:28885683|RGD:28886930|RGD:28889066|RGD:28889070|RGD:28889366|RGD:28889370|RGD:28889669|RGD:28889945|RGD:28890678|RGD:28890683|RGD:28890946|RGD:288912088554872ClinVar Annotator: match by term: Age related macular degeneration 1 | ClinVar Annotator: match by more ...ClinVarPMID:25741868|PMID:28492532
HMCN1Humanage related macular degeneration 1  IAGPRGD:288951608554872ClinVar Annotator: match by term: Age related macular degeneration 1ClinVarPMID:25741868|PMID:27007659|PMID:28492532
HMCN1Humanage related macular degeneration 1  IAGPRGD:1517597658554872ClinVar Annotator: match by term: HMCN1-related conditionClinVarPMID:17576681|PMID:28492532|PMID:9536098
HMCN1Humanage related macular degeneration 1  IAGPRGD:28891446|RGD:28891448|RGD:28891715|RGD:28891721|RGD:28893959|RGD:28894446|RGD:28895165|RGD:28895172|RGD:28895657|RGD:28895661|RGD:28895663|RGD:28895858|RGD:28896358|RGD:28896362|RGD:8643118|RGD:8643119|RGD:8643121|RGD:8646953|RGD:8646954|RGD:8646957|RGD:96886938554872ClinVar Annotator: match by term: Age related macular degeneration 1 | ClinVar Annotator: match by more ...ClinVarPMID:25741868|PMID:28492532
HMCN1Humanage related macular degeneration 1  IAGPRGD:85956708554872ClinVar Annotator: match by term: MACULOPATHY, AGE-RELATED, 1ClinVarPMID:14570714|PMID:17216616|PMID:28492532|PMID:9715689
HMCN1Humanage related macular degeneration 1  IAGPRGD:288862938554872ClinVar Annotator: match by term: Age related macular degeneration 1ClinVarPMID:25338956|PMID:28492532
HMCN1Humanage related macular degeneration 1  IAGPRGD:10049282|RGD:10049283|RGD:11577412|RGD:11577479|RGD:11577488|RGD:11577652|RGD:11577676|RGD:11577685|RGD:11577702|RGD:11577736|RGD:11577767|RGD:11577904|RGD:11577939|RGD:11577968|RGD:11578008|RGD:11578017|RGD:11578023|RGD:11578095|RGD:11578118|RGD:11578125|RGD:11578182|RGD:11578213|RGD:11578369|RGD:11578459|RGD:11578544|RGD:11578709|RGD:11578715|RGD:11578725|RGD:11578852|RGD:11578915|RGD:11578982|RGD:11579017|RGD:11579103|RGD:11579150|RGD:11579170|RGD:11579242|RGD:11579304|RGD:11579349|RGD:11579382|RGD:11579491|RGD:11579506|RGD:11579543|RGD:11579611|RGD:11579675|RGD:11579699|RGD:11579706|RGD:11579771|RGD:11579842|RGD:11579939|RGD:11580037|RGD:11580044|RGD:11580067|RGD:11580206|RGD:11580237|RGD:11580238|RGD:11580338|RGD:11580350|RGD:11580393|RGD:11580407|RGD:11580422|RGD:11580466|RGD:11580488|RGD:11580497|RGD:11580533|RGD:11580549|RGD:11580553|RGD:11580625|RGD:11580632|RGD:11580712|RGD:11580724|RGD:11580727|RGD:11580740|RGD:11580747|RGD:11580788|RGD:11580811|RGD:11580846|RGD:11581005|RGD:11581006|RGD:11581086|RGD:11581099|RGD:11581145|RGD:11581162|RGD:11581266|RGD:11581275|RGD:11581278|RGD:11581308|RGD:11581312|RGD:11581372|RGD:11581374|RGD:11581413|RGD:11581463|RGD:11581471|RGD:11581493|RGD:11581507|RGD:11581510|RGD:11581543|RGD:11581546|RGD:11581557|RGD:11581587|RGD:11581616|RGD:11581626|RGD:11581646|RGD:11581683|RGD:11581729|RGD:11581741|RGD:11581779|RGD:11581782|RGD:11581794|RGD:11581857|RGD:11581891|RGD:11581916|RGD:11581922|RGD:11582009|RGD:11582034|RGD:11582108|RGD:11582115|RGD:11582139|RGD:11582154|RGD:11582166|RGD:11582176|RGD:11582187|RGD:11582192|RGD:11582193|RGD:11582209|RGD:11582214|RGD:11582312|RGD:11582332|RGD:11650156|RGD:11658131|RGD:1269139788554872ClinVar Annotator: match by term: Age related macular degeneration 1 | ClinVar Annotator: match by more ...ClinVarPMID:25741868|PMID:28492532
HMCN1Humangastrointestinal stromal tumor  IAGPRGD:1267343158554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
HMCN1Humanmacular degeneration  IAGPRGD:11577488|RGD:11578459|RGD:11579150|RGD:116581318554872ClinVar Annotator: match by term: Macular degenerationClinVarPMID:25741868|PMID:28492532
HMCN1Humanmacular degeneration  IAGPRGD:11580793|RGD:11580942|RGD:11648269|RGD:116592428554872ClinVar Annotator: match by term: Macular degenerationClinVarPMID:28492532
HMCN1Humanmacular degeneration  IAGPRGD:11589085|RGD:11647367|RGD:11652718|RGD:11656423|RGD:116638928554872ClinVar Annotator: match by term: Macular degenerationClinVar 
HMCN1Humanparathyroid carcinoma  IAGPRGD:1267343158554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
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HMCN1Humanage related macular degeneration 1  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
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HMCN1Humanage related macular degeneration 1  IAGP 7240710 OMIM 

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Original Reference(s)
HMCN1Human(+)-schisandrin B multiple interactionsISORGD:15647726480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of HMCN1 mRNA]CTDPMID:31150632
HMCN1Human1,2-dichloroethane decreases expressionISORGD:16186866480464ethylene dichloride results in decreased expression of HMCN1 mRNACTDPMID:28960355
HMCN1Human1,2-dimethylhydrazine decreases expressionISORGD:161868664804641,2-Dimethylhydrazine results in decreased expression of HMCN1 mRNACTDPMID:22206623
HMCN1Human1,3-dinitrobenzene decreases expressionISORGD:156477264804643-dinitrobenzene results in decreased expression of HMCN1 mRNACTDPMID:21983209
HMCN1Human17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of HMCN1 mRNA; [Raloxifene Hydrochloride co-treated more ...CTDPMID:21185374|PMID:30165855
HMCN1Human2,3',4,4',5-Pentachlorobiphenyl increases expressionISORGD:161868664804642,3',4,4',5-pentachlorobiphenyl results in increased expression of HMCN1 mRNACTDPMID:31388691
HMCN1Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:16186866480464Tetrachlorodibenzodioxin results in decreased expression of HMCN1 mRNACTDPMID:21889950
HMCN1Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:15647726480464Tetrachlorodibenzodioxin results in increased expression of HMCN1 mRNACTDPMID:32109520
HMCN1Human4,4'-sulfonyldiphenol increases expressionISORGD:16186866480464bisphenol S results in increased expression of HMCN1 mRNACTDPMID:30951980
HMCN1Human4,4'-sulfonyldiphenol multiple interactionsISORGD:16186866480464[bisphenol S co-treated with Tretinoin] results in decreased expression of HMCN1 mRNACTDPMID:30951980
HMCN1Humanacetamide increases expressionISORGD:15647726480464acetamide results in increased expression of HMCN1 mRNACTDPMID:31881176
HMCN1Humanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of HMCN1 geneCTDPMID:27153756
HMCN1Humanaflatoxin B1 increases methylationEXP 6480464Aflatoxin B1 results in increased methylation of HMCN1 intronCTDPMID:30157460
HMCN1Humanall-trans-retinoic acid multiple interactionsISORGD:16186866480464[bisphenol F co-treated with Tretinoin] results in decreased expression of HMCN1 mRNA; [bisphenol S co-treated more ...CTDPMID:30951980
HMCN1Humanalpha-Zearalanol multiple interactionsISORGD:15647726480464[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of HMCN1 mRNACTDPMID:35163327
HMCN1Humanaristolochic acid A decreases expressionEXP 6480464aristolochic acid I results in decreased expression of HMCN1 mRNACTDPMID:33212167
HMCN1Humanarsane decreases expressionISORGD:16186866480464Arsenic results in decreased expression of HMCN1 mRNACTDPMID:19654921
HMCN1Humanarsane multiple interactionsISORGD:16186866480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased secretion of HMCN1 more ...CTDPMID:37527016
HMCN1Humanarsenic atom decreases expressionISORGD:16186866480464Arsenic results in decreased expression of HMCN1 mRNACTDPMID:19654921
HMCN1Humanarsenic atom multiple interactionsISORGD:16186866480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased secretion of HMCN1 more ...CTDPMID:37527016

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Biological Process

  
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HMCN1Humanactin cytoskeleton organization involved_inIMP 150520179 PMID:29488390UniProtPMID:29488390
HMCN1Humanbasement membrane organization involved_inISSUniProtKB:D3YXG0150520179 UniProtGO_REF:0000024
HMCN1Humanbasement membrane organization involved_inIEAUniProtKB:D3YXG0|ensembl:ENSMUSP00000074340150520179 EnsemblGO_REF:0000107
HMCN1Humancell division involved_inIEAUniProtKB-KW:KW-0132150520179 UniProtGO_REF:0000043
HMCN1Humanheterophilic cell-cell adhesion via plasma membrane cell adhesion molecules involved_inIBAMGI:1926483|MGI:1930171|PANTHER:PTN002760328|UniProtKB:Q15223150520179 GO_CentralGO_REF:0000033
HMCN1Humanhomophilic cell adhesion via plasma membrane adhesion molecules involved_inIBAMGI:1926483|MGI:1930171|PANTHER:PTN002760328|UniProtKB:Q15223150520179 GO_CentralGO_REF:0000033
HMCN1Humanresponse to bacterium acts_upstream_of_or_withinIEAUniProtKB:D3YXG0|ensembl:ENSMUSP00000074340150520179 EnsemblGO_REF:0000107
HMCN1Humanvisual perception involved_inIEAUniProtKB-KW:KW-0844150520179 UniProtGO_REF:0000043

Cellular Component
1 to 20 of 22 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HMCN1Humanadherens junction is_active_inIBAMGI:1926483|MGI:1930171|PANTHER:PTN002760328|UniProtKB:Q15223|UniProtKB:Q96NY8150520179 GO_CentralGO_REF:0000033
HMCN1Humananchoring junction located_inIEAUniProtKB-KW:KW-0965150520179 UniProtGO_REF:0000043
HMCN1Humananchoring junction located_inIEAUniProtKB-SubCell:SL-0038150520179 UniProtGO_REF:0000044
HMCN1Humanbasement membrane located_inIEAUniProtKB:D3YXG0|ensembl:ENSMUSP00000074340150520179 EnsemblGO_REF:0000107
HMCN1Humanbasement membrane located_inISSUniProtKB:D3YXG0150520179 UniProtGO_REF:0000024
HMCN1Humanbasement membrane located_inIEAUniProtKB-KW:KW-0084150520179 UniProtGO_REF:0000043
HMCN1Humanbasement membrane located_inIEAUniProtKB-SubCell:SL-0025150520179 UniProtGO_REF:0000044
HMCN1Humancell cortex located_inIEAUniProtKB:D3YXG0|ensembl:ENSMUSP00000074340150520179 EnsemblGO_REF:0000107
HMCN1Humancell junction located_inIEAUniProtKB:D3YXG0|ensembl:ENSMUSP00000074340150520179 EnsemblGO_REF:0000107
HMCN1Humancleavage furrow located_inIEAUniProtKB-SubCell:SL-0467150520179 UniProtGO_REF:0000044
HMCN1Humancollagen-containing extracellular matrix located_inTAS 150520179 PMID:22261194BHF-UCLPMID:22261194
HMCN1Humancollagen-containing extracellular matrix is_active_inIBAMGI:2685047|PANTHER:PTN001070049150520179 GO_CentralGO_REF:0000033
HMCN1Humancollagen-containing extracellular matrix located_inHDA 150520179 PMID:28344315BHF-UCLPMID:28344315
HMCN1Humancytoplasm located_inIEAUniProtKB:D3YXG0|ensembl:ENSMUSP00000074340150520179 EnsemblGO_REF:0000107
HMCN1Humancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
HMCN1Humancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
HMCN1Humancytoplasm located_inISSUniProtKB:D3YXG0150520179 UniProtGO_REF:0000024
HMCN1Humanextracellular exosome located_inHDA 150520179 PMID:23533145UniProtPMID:23533145
HMCN1Humanextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
HMCN1Humanextracellular region located_inIEAUniProtKB:D3YXG0|ensembl:ENSMUSP00000074340150520179 EnsemblGO_REF:0000107
1 to 20 of 22 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HMCN1Humancalcium ion binding enablesIEAInterPro:IPR001881|InterPro:IPR018097150520179 InterProGO_REF:0000002
HMCN1Humanextracellular matrix structural constituent enablesHDA 150520179 PMID:28344315BHF-UCLPMID:28344315
HMCN1Humanprotein binding enablesIPIUniProtKB:P0C7Q2150520179 PMID:19696174IntActPMID:19696174

1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HMCN1HumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:603075|PMID:9715689
HMCN1HumanChoroidal neovascularization  IAGP 8699517 HPOMIM:603075
HMCN1HumanFoveal hypopigmentation  IAGP 8699517 HPOMIM:603075
HMCN1HumanGeographic atrophy  IAGP 8699517 HPOMIM:603075|PMID:9715689
HMCN1HumanLate onset  IAGP 8699517 HPOMIM:603075|PMID:9715689
HMCN1HumanMacular degeneration  IAGP 8699517 HPOMIM:603075|PMID:15013873|PMID:9715689
HMCN1HumanMacular drusen  IAGP 8699517 HPOMIM:603075|PMID:9715689
HMCN1HumanMacular hemorrhage  IAGP 8699517 HPOMIM:603075
HMCN1HumanProgressive visual loss  IAGP 8699517 HPOMIM:603075|PMID:15013873
1 to 9 of 9 rows
1 to 16 of 16 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HMCN1HumanGastrointestinal stroma tumor  IAGPRGD:1267343158554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
HMCN1HumanMacular degeneration  IAGPRGD:115809428554872ClinVar Annotator: match by term: Macular degenerationClinVarPMID:28492532
HMCN1HumanMacular degeneration  IAGPRGD:116581318554872ClinVar Annotator: match by term: Macular degenerationClinVarPMID:25741868|PMID:28492532
HMCN1HumanMacular degeneration  IAGPRGD:115791508554872ClinVar Annotator: match by term: Macular degenerationClinVarPMID:25741868|PMID:28492532
HMCN1HumanMacular degeneration  IAGPRGD:115774888554872ClinVar Annotator: match by term: Macular degenerationClinVarPMID:25741868|PMID:28492532
HMCN1HumanMacular degeneration  IAGPRGD:116482698554872ClinVar Annotator: match by term: Macular degenerationClinVarPMID:28492532
HMCN1HumanMacular degeneration  IAGPRGD:116592428554872ClinVar Annotator: match by term: Macular degenerationClinVarPMID:28492532
HMCN1HumanMacular degeneration  IAGPRGD:115807938554872ClinVar Annotator: match by term: Macular degenerationClinVarPMID:28492532
HMCN1HumanMacular degeneration  IAGPRGD:115784598554872ClinVar Annotator: match by term: Macular degenerationClinVarPMID:25741868|PMID:28492532
HMCN1HumanMacular degeneration  IAGPRGD:115890858554872ClinVar Annotator: match by term: Macular degenerationClinVar 
HMCN1HumanMacular degeneration  IAGPRGD:116473678554872ClinVar Annotator: match by term: Macular degenerationClinVar 
HMCN1HumanMacular degeneration  IAGPRGD:116564238554872ClinVar Annotator: match by term: Macular degenerationClinVar 
HMCN1HumanMacular degeneration  IAGPRGD:116527188554872ClinVar Annotator: match by term: Macular degenerationClinVar 
HMCN1HumanMacular degeneration  IAGPRGD:116638928554872ClinVar Annotator: match by term: Macular degenerationClinVar 
HMCN1HumanParathyroid carcinoma  IAGPRGD:1267343158554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
HMCN1HumanProstate cancer  IAGPRGD:96870978554872ClinVar Annotator: match by term: Prostatic cancerClinVarPMID:23265383
1 to 16 of 16 rows

#
Reference Title
Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:9715689   PMID:11222143   PMID:12388743   PMID:14570714   PMID:14702039   PMID:15370542   PMID:15467524   PMID:16710414   PMID:16885922   PMID:17057786   PMID:17157600   PMID:17216616  
PMID:17591627   PMID:19190085   PMID:19229767   PMID:19696174   PMID:19948975   PMID:20299368   PMID:21873635   PMID:22261194   PMID:22939629   PMID:22981695   PMID:23376485   PMID:23533145  
PMID:23534349   PMID:24604465   PMID:24912920   PMID:24951538   PMID:25332235   PMID:25338956   PMID:25963833   PMID:25986072   PMID:26344197   PMID:28344315   PMID:28977470   PMID:29488390  
PMID:29500156   PMID:30021884   PMID:30809309   PMID:31638245   PMID:32414224   PMID:34299191   PMID:35509820   PMID:35563538   PMID:35886066  



HMCN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381185,734,391 - 186,190,949 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1185,734,391 - 186,190,949 (+)EnsemblGRCh38hg38GRCh38
GRCh371185,703,523 - 186,160,081 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361183,970,306 - 184,426,708 (+)NCBINCBI36Build 36hg18NCBI36
Celera1158,814,385 - 159,270,786 (+)NCBICelera
Cytogenetic Map1q25.3-q31.1NCBI
HuRef1156,938,491 - 157,394,637 (+)NCBIHuRef
CHM1_11187,122,845 - 187,579,213 (+)NCBICHM1_1
T2T-CHM13v2.01185,089,079 - 185,545,614 (+)NCBIT2T-CHM13v2.0
Hmcn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,438,251 - 150,869,568 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1150,438,275 - 150,869,186 (-)EnsemblGRCm39 Ensembl
GRCm381150,562,500 - 150,993,652 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,562,524 - 150,993,435 (-)EnsemblGRCm38mm10GRCm38
MGSCv371150,488,170 - 150,802,827 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361152,635,966 - 152,755,653 (-)NCBIMGSCv36mm8
Celera1153,006,498 - 153,437,575 (-)NCBICelera
Cytogenetic Map1G1NCBI
cM Map163.84NCBI
Hmcn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81365,165,532 - 65,634,681 (-)NCBIGRCr8
mRatBN7.21362,615,461 - 63,084,524 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1362,615,461 - 63,084,524 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1365,251,755 - 65,716,143 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01366,522,976 - 66,980,354 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01363,789,725 - 64,243,174 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01367,799,791 - 68,360,664 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1367,799,791 - 68,360,664 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01372,762,698 - 72,782,812 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01372,887,371 - 73,322,089 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41365,296,682 - 65,779,372 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1362,569,267 - 63,028,084 (-)NCBICelera
Cytogenetic Map13q21NCBI
Hmcn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540624,229,973 - 24,622,314 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540624,229,666 - 24,623,341 (+)NCBIChiLan1.0ChiLan1.0
HMCN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2163,529,719 - 63,992,614 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1163,211,135 - 63,673,640 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,254,948 - 161,717,526 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,407,909 - 165,870,219 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,522,384 - 165,869,148 (+)Ensemblpanpan1.1panPan2
HMCN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1718,798,802 - 19,254,847 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl718,798,796 - 19,253,786 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha718,318,234 - 18,776,558 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0718,532,233 - 18,990,765 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl718,532,242 - 18,990,049 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1718,440,588 - 18,897,706 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0718,548,519 - 19,007,053 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0718,679,642 - 19,137,567 (+)NCBIUU_Cfam_GSD_1.0
Hmcn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934486,365,905 - 86,743,041 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364814,213,631 - 4,589,464 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364814,212,713 - 4,494,469 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMCN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9126,850,313 - 127,342,685 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19126,850,208 - 127,342,696 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29139,722,309 - 139,770,641 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HMCN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12543,230,265 - 43,677,315 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2543,231,328 - 43,554,097 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605544,419,653 - 44,876,647 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hmcn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248147,424,937 - 7,730,917 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248147,423,844 - 7,844,890 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in HMCN1
2981 total Variants

1 to 10 of 3407 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_031935.3(HMCN1):c.13231-4A>G single nucleotide variant Age related macular degeneration 1 [RCV000305069]|HMCN1-related disorder [RCV003949976]|not provided [RCV002059394] Chr1:186132324 [GRCh38]
Chr1:186101456 [GRCh37]
Chr1:1q31.1
likely benign|uncertain significance
NM_031935.3(HMCN1):c.16034A>G (p.Gln5345Arg) single nucleotide variant Age related macular degeneration 1 [RCV001102262]|MACULAR DEGENERATION, AGE-RELATED, 1, SUSCEPTIBILITY TO [RCV000002289]|not provided [RCV001851577] Chr1:186178506 [GRCh38]
Chr1:186147638 [GRCh37]
Chr1:1q31.1
risk factor|likely benign|uncertain significance
NM_031935.2(HMCN1):c.268+5217A>G single nucleotide variant Lung cancer [RCV000090107] Chr1:185740264 [GRCh38]
Chr1:185709396 [GRCh37]
Chr1:1q25.3
uncertain significance
NM_031935.2(HMCN1):c.268+38163T>C single nucleotide variant Lung cancer [RCV000090108] Chr1:185773210 [GRCh38]
Chr1:185742342 [GRCh37]
Chr1:1q25.3
uncertain significance
NM_031935.2(HMCN1):c.2212+1572A>G single nucleotide variant Lung cancer [RCV000090112] Chr1:185967487 [GRCh38]
Chr1:185936619 [GRCh37]
Chr1:1q31.1
uncertain significance
NM_031935.2(HMCN1):c.8485+92G>C single nucleotide variant Lung cancer [RCV000090113] Chr1:186076714 [GRCh38]
Chr1:186045846 [GRCh37]
Chr1:1q31.1
uncertain significance
GRCh38/hg38 1q25.1-31.1(chr1:175035040-186042595)x1 copy number loss See cases [RCV000051221] Chr1:175035040..186042595 [GRCh38]
Chr1:175004176..186011727 [GRCh37]
Chr1:173270799..184278350 [NCBI36]
Chr1:1q25.1-31.1
pathogenic
GRCh38/hg38 1q25.2-32.1(chr1:179032905-199724897)x1 copy number loss See cases [RCV000053948] Chr1:179032905..199724897 [GRCh38]
Chr1:179002040..199694025 [GRCh37]
Chr1:177268663..197960648 [NCBI36]
Chr1:1q25.2-32.1
pathogenic
GRCh38/hg38 1q25.3-31.1(chr1:182137726-186931125)x1 copy number loss See cases [RCV000053949] Chr1:182137726..186931125 [GRCh38]
Chr1:182106861..186900257 [GRCh37]
Chr1:180373484..185166880 [NCBI36]
Chr1:1q25.3-31.1
pathogenic
NM_031935.2(HMCN1):c.6099T>G (p.Cys2033Trp) single nucleotide variant Malignant melanoma [RCV000064382] Chr1:186039798 [GRCh38]
Chr1:186008930 [GRCh37]
Chr1:184275553 [NCBI36]
Chr1:1q31.1
not provided
1 to 10 of 3407 rows

Predicted Target Of
Summary Value
Count of predictions:972
Count of miRNA genes:472
Interacting mature miRNAs:514
Transcripts:ENST00000271588, ENST00000367492, ENST00000414277, ENST00000475585, ENST00000485744, ENST00000493413
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 20 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597076118GWAS1172192_Hlate-onset Alzheimers disease QTL GWAS1172192 (human)0.000001late-onset Alzheimers disease1185780742185780743Human
597326650GWAS1422724_HFEV/FVC ratio QTL GWAS1422724 (human)6e-27FEV/FVC ratioforced expiratory volume to forced vital capacity ratio (CMO:0000241)1186144720186144721Human
597162966GWAS1259040_Hglycerate measurement QTL GWAS1259040 (human)0.000001glycerate measurement1185813553185813554Human
597326459GWAS1422533_HFEV/FVC ratio QTL GWAS1422533 (human)2e-12FEV/FVC ratioforced expiratory volume to forced vital capacity ratio (CMO:0000241)1185956670185956671Human
597141141GWAS1237215_Hchronic obstructive pulmonary disease QTL GWAS1237215 (human)1e-09lung integrity trait (VT:0010906)1186158260186158261Human
597332377GWAS1428451_HS-6-hydroxywarfarin measurement QTL GWAS1428451 (human)0.000007S-6-hydroxywarfarin measurement1186076294186076295Human
597061170GWAS1157244_HFEV/FVC ratio QTL GWAS1157244 (human)3e-09FEV/FVC ratioforced expiratory volume to forced vital capacity ratio (CMO:0000241)1186033958186033959Human
597061171GWAS1157245_HFEV/FVC ratio QTL GWAS1157245 (human)3e-23FEV/FVC ratioforced expiratory volume to forced vital capacity ratio (CMO:0000241)1186144720186144721Human
597159984GWAS1256058_Hchenodeoxycholate measurement QTL GWAS1256058 (human)0.000003chenodeoxycholate measurement1186180103186180104Human
407059051GWAS708027_Hvital capacity QTL GWAS708027 (human)2e-13vital capacity1186121238186121239Human

1 to 10 of 20 rows
D1S191  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,821,622 - 185,821,860UniSTSGRCh37
GRCh371185,821,687 - 185,821,851UniSTSGRCh37
Build 361184,088,310 - 184,088,474RGDNCBI36
Celera1158,932,389 - 158,932,551RGD
Celera1158,932,324 - 158,932,560UniSTS
Cytogenetic Map1q25.3-q31.1UniSTS
HuRef1157,056,450 - 157,056,612UniSTS
HuRef1157,056,385 - 157,056,621UniSTS
Marshfield Genetic Map1200.96RGD
Genethon Genetic Map1205.1UniSTS
TNG Radiation Hybrid Map187987.0UniSTS
deCODE Assembly Map1186.76UniSTS
GeneMap99-GB4 RH Map1639.32UniSTS
Whitehead-RH Map1797.5UniSTS
Whitehead-YAC Contig Map1 UniSTS
NCBI RH Map11584.2UniSTS
D1S413  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371198,620,404 - 198,620,651UniSTSGRCh37
GRCh371198,620,398 - 198,620,667UniSTSGRCh37
Build 361196,887,027 - 196,887,274RGDNCBI36
Celera1171,742,954 - 171,743,223UniSTS
Celera1171,742,960 - 171,743,207RGD
Cytogenetic Map1q25.3-q31.1UniSTS
Cytogenetic Map1q31-q32UniSTS
HuRef1169,787,631 - 169,787,898UniSTS
HuRef1169,787,637 - 169,787,882UniSTS
Marshfield Genetic Map1212.44UniSTS
Marshfield Genetic Map1212.44RGD
Genethon Genetic Map1216.5UniSTS
deCODE Assembly Map1194.98UniSTS
GeneMap99-GB4 RH Map1660.6UniSTS
Whitehead-YAC Contig Map1 UniSTS
NCBI RH Map11646.2UniSTS
GeneMap99-G3 RH Map17650.0UniSTS
D1S444  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,756,247 - 185,756,423UniSTSGRCh37
Build 361184,022,870 - 184,023,046RGDNCBI36
Celera1158,866,949 - 158,867,125RGD
Cytogenetic Map1q25.3-q31.1UniSTS
HuRef1156,991,054 - 156,991,230UniSTS
Marshfield Genetic Map1200.96RGD
Marshfield Genetic Map1200.96UniSTS
Genethon Genetic Map1205.1UniSTS
deCODE Assembly Map1186.75UniSTS
Whitehead-RH Map1797.5UniSTS
Whitehead-YAC Contig Map1 UniSTS
D1S2848  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,834,665 - 185,834,785UniSTSGRCh37
Build 361184,101,288 - 184,101,408RGDNCBI36
Celera1158,945,361 - 158,945,479RGD
Cytogenetic Map1q25.3-q31.1UniSTS
HuRef1157,069,422 - 157,069,540UniSTS
Marshfield Genetic Map1200.96RGD
Marshfield Genetic Map1200.96UniSTS
Genethon Genetic Map1205.1UniSTS
TNG Radiation Hybrid Map188011.0UniSTS
deCODE Assembly Map1186.76UniSTS
Whitehead-YAC Contig Map1 UniSTS
D1S254  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,779,705 - 185,779,906UniSTSGRCh37
Build 361184,046,328 - 184,046,529RGDNCBI36
Celera1158,890,406 - 158,890,607RGD
Cytogenetic Map1q25.3-q31.1UniSTS
HuRef1157,014,468 - 157,014,669UniSTS
Marshfield Genetic Map1200.96UniSTS
Marshfield Genetic Map1200.96RGD
Genethon Genetic Map1205.1UniSTS
deCODE Assembly Map1186.76UniSTS
Whitehead-RH Map1797.5UniSTS
Whitehead-YAC Contig Map1 UniSTS
NCBI RH Map11573.4UniSTS
D1S1194  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,989,319 - 185,989,435UniSTSGRCh37
Celera1159,100,006 - 159,100,122UniSTS
Cytogenetic Map1q25.3-q31.1UniSTS
HuRef1157,224,075 - 157,224,191UniSTS
Marshfield Genetic Map1200.96RGD
Marshfield Genetic Map1200.96UniSTS
deCODE Assembly Map1186.76UniSTS
D1S466  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371182,303,632 - 182,303,800UniSTSGRCh37
GRCh371182,303,599 - 182,303,809UniSTSGRCh37
Build 361180,570,255 - 180,570,423RGDNCBI36
Celera8130,236,304 - 130,237,600UniSTS
Celera1155,414,746 - 155,414,910RGD
Celera1155,414,713 - 155,414,919UniSTS
Cytogenetic Map1q25.3-q31.1UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map8q24UniSTS
HuRef1153,538,876 - 153,539,074UniSTS
HuRef1153,538,909 - 153,539,065UniSTS
HuRef350,367,626 - 50,368,054UniSTS
Marshfield Genetic Map1198.3UniSTS
Marshfield Genetic Map1198.3RGD
Genethon Genetic Map1203.0UniSTS
TNG Radiation Hybrid Map186222.0UniSTS
deCODE Assembly Map1183.53UniSTS
GeneMap99-GB4 RH Map1634.34UniSTS
Whitehead-RH Map1792.5UniSTS
Whitehead-YAC Contig Map1 UniSTS
NCBI RH Map11563.6UniSTS
GeneMap99-G3 RH Map17137.0UniSTS
D1S2165  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,964,348 - 185,964,497UniSTSGRCh37
Build 361184,230,971 - 184,231,120RGDNCBI36
Celera1159,075,034 - 159,075,183RGD
Cytogenetic Map1q25.3-q31.1UniSTS
HuRef1157,199,105 - 157,199,254UniSTS
Whitehead-RH Map1797.4UniSTS
Whitehead-YAC Contig Map1 UniSTS
SHGC-3550  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,756,216 - 185,756,331UniSTSGRCh37
Build 361184,022,839 - 184,022,954RGDNCBI36
Celera1158,866,918 - 158,867,033RGD
Cytogenetic Map1q25.3-q31.1UniSTS
HuRef1156,991,023 - 156,991,138UniSTS
SHGC-1041  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,779,686 - 185,779,854UniSTSGRCh37
Build 361184,046,309 - 184,046,477RGDNCBI36
Celera1158,890,387 - 158,890,555RGD
Cytogenetic Map1q25.3-q31.1UniSTS
HuRef1157,014,449 - 157,014,617UniSTS
TNG Radiation Hybrid Map187973.0UniSTS
SHGC-106463  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,890,148 - 185,890,476UniSTSGRCh37
Build 361184,156,771 - 184,157,099RGDNCBI36
Celera1159,000,838 - 159,001,166RGD
Cytogenetic Map1q25.3-q31.1UniSTS
HuRef1157,124,903 - 157,125,231UniSTS
TNG Radiation Hybrid Map188041.0UniSTS
SHGC-106819  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371186,094,488 - 186,094,784UniSTSGRCh37
Build 361184,361,111 - 184,361,407RGDNCBI36
Celera1159,205,172 - 159,205,468RGD
Cytogenetic Map1q25.3-q31.1UniSTS
HuRef1157,329,131 - 157,329,429UniSTS
TNG Radiation Hybrid Map189134.0UniSTS
SHGC-58126  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,790,753 - 185,790,953UniSTSGRCh37
Build 361184,057,376 - 184,057,576RGDNCBI36
Celera1158,901,454 - 158,901,654RGD
Cytogenetic Map1q25.3-q31.1UniSTS
HuRef1157,025,516 - 157,025,716UniSTS
TNG Radiation Hybrid Map187976.0UniSTS
AL009939  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371185,928,120 - 185,928,255UniSTSGRCh37
Build 361184,194,743 - 184,194,878RGDNCBI36
Celera1159,038,811 - 159,038,946RGD
Cytogenetic Map1q25.3-q31.1UniSTS
HuRef1157,162,876 - 157,163,011UniSTS
D1S191  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q25.3-q31.1UniSTS
Marshfield Genetic Map1200.96UniSTS
Genethon Genetic Map1205.1UniSTS
TNG Radiation Hybrid Map187994.0UniSTS
deCODE Assembly Map1186.76UniSTS
Whitehead-RH Map1797.5UniSTS
Whitehead-YAC Contig Map1 UniSTS
NCBI RH Map11573.4UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2384 2788 2244 4945 1720 2297 5 618 1437 460 2266 6738 5959 51 3704 828 1713 1569 172 1


1 to 30 of 32 rows
RefSeq Transcripts NG_011841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011510038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011510041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017002437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047431608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054339010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF156100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ306906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL118512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL121996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL133515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL133553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL135796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL135797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL391824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX928748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS161060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 32 rows

Ensembl Acc Id: ENST00000271588   ⟹   ENSP00000271588
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,734,391 - 186,190,949 (+)Ensembl
Ensembl Acc Id: ENST00000414277   ⟹   ENSP00000406205
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1186,171,387 - 186,189,665 (+)Ensembl
Ensembl Acc Id: ENST00000475585
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1186,153,826 - 186,172,118 (+)Ensembl
Ensembl Acc Id: ENST00000485744
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,957,069 - 185,993,437 (+)Ensembl
Ensembl Acc Id: ENST00000493413
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1185,963,808 - 185,978,145 (+)Ensembl
RefSeq Acc Id: NM_031935   ⟹   NP_114141
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,734,391 - 186,190,949 (+)NCBI
GRCh371185,703,683 - 186,160,085 (+)ENTREZGENE
Build 361183,970,306 - 184,426,708 (+)NCBI Archive
HuRef1156,938,491 - 157,394,637 (+)ENTREZGENE
CHM1_11187,122,845 - 187,579,213 (+)NCBI
T2T-CHM13v2.01185,089,079 - 185,545,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011510038   ⟹   XP_011508340
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,734,391 - 186,190,949 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011510041   ⟹   XP_011508343
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,734,391 - 186,088,270 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017002437   ⟹   XP_016857926
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,962,586 - 186,190,949 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024450118   ⟹   XP_024305886
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,734,391 - 186,095,422 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047431608   ⟹   XP_047287564
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,995,112 - 186,190,949 (+)NCBI
RefSeq Acc Id: XM_054339006   ⟹   XP_054194981
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01185,089,079 - 185,545,614 (+)NCBI
RefSeq Acc Id: XM_054339007   ⟹   XP_054194982
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01185,317,254 - 185,545,614 (+)NCBI
RefSeq Acc Id: XM_054339008   ⟹   XP_054194983
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01185,349,786 - 185,545,614 (+)NCBI
RefSeq Acc Id: XM_054339009   ⟹   XP_054194984
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01185,089,079 - 185,450,095 (+)NCBI
RefSeq Acc Id: XM_054339010   ⟹   XP_054194985
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01185,089,079 - 185,442,943 (+)NCBI
1 to 5 of 13 rows
1 to 5 of 13 rows
RefSeq Acc Id: NP_114141   ⟸   NM_031935
- Peptide Label: precursor
- UniProtKB: Q96DN8 (UniProtKB/Swiss-Prot),   Q96DN3 (UniProtKB/Swiss-Prot),   Q5TYR7 (UniProtKB/Swiss-Prot),   A6NGE3 (UniProtKB/Swiss-Prot),   Q96SC3 (UniProtKB/Swiss-Prot),   Q96RW7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011508343   ⟸   XM_011510041
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011508340   ⟸   XM_011510038
- Peptide Label: isoform X1
- UniProtKB: Q96RW7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016857926   ⟸   XM_017002437
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_024305886   ⟸   XM_024450118
- Peptide Label: isoform X4
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-Q96RW7-F1-model_v2 AlphaFold Q96RW7 1-1400 view protein structure
AF-Q96RW7-F2-model_v2 AlphaFold Q96RW7 201-1600 view protein structure
AF-Q96RW7-F3-model_v2 AlphaFold Q96RW7 401-1800 view protein structure
AF-Q96RW7-F4-model_v2 AlphaFold Q96RW7 601-2000 view protein structure
AF-Q96RW7-F5-model_v2 AlphaFold Q96RW7 801-2200 view protein structure
AF-Q96RW7-F6-model_v2 AlphaFold Q96RW7 1001-2400 view protein structure
AF-Q96RW7-F7-model_v2 AlphaFold Q96RW7 1201-2600 view protein structure
AF-Q96RW7-F8-model_v2 AlphaFold Q96RW7 1401-2800 view protein structure
AF-Q96RW7-F9-model_v2 AlphaFold Q96RW7 1601-3000 view protein structure
AF-Q96RW7-F10-model_v2 AlphaFold Q96RW7 1801-3200 view protein structure
AF-Q96RW7-F11-model_v2 AlphaFold Q96RW7 2001-3400 view protein structure
AF-Q96RW7-F12-model_v2 AlphaFold Q96RW7 2201-3600 view protein structure
AF-Q96RW7-F13-model_v2 AlphaFold Q96RW7 2401-3800 view protein structure
AF-Q96RW7-F14-model_v2 AlphaFold Q96RW7 2601-4000 view protein structure
AF-Q96RW7-F15-model_v2 AlphaFold Q96RW7 2801-4200 view protein structure
AF-Q96RW7-F16-model_v2 AlphaFold Q96RW7 3001-4400 view protein structure
AF-Q96RW7-F17-model_v2 AlphaFold Q96RW7 3201-4600 view protein structure
AF-Q96RW7-F18-model_v2 AlphaFold Q96RW7 3401-4800 view protein structure
AF-Q96RW7-F19-model_v2 AlphaFold Q96RW7 3601-5000 view protein structure
AF-Q96RW7-F20-model_v2 AlphaFold Q96RW7 3801-5200 view protein structure
AF-Q96RW7-F21-model_v2 AlphaFold Q96RW7 4001-5400 view protein structure
AF-Q96RW7-F22-model_v2 AlphaFold Q96RW7 4201-5600 view protein structure
AF-Q96RW7-F23-model_v2 AlphaFold Q96RW7 4401-5635 view protein structure

RGD ID:6858396
Promoter ID:EPDNEW_H2363
Type:initiation region
Name:HMCN1_1
Description:hemicentin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381185,734,438 - 185,734,498EPDNEW


1 to 40 of 76 rows
Database
Acc Id
Source(s)
COSMIC HMCN1 COSMIC
Ensembl Genes ENSG00000143341 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000271588 ENTREZGENE
  ENST00000271588.9 UniProtKB/Swiss-Prot
Gene3D-CATH 2.20.100.10 UniProtKB/Swiss-Prot
  2.40.155.10 UniProtKB/Swiss-Prot
  2.60.40.10 UniProtKB/Swiss-Prot
  3.40.50.410 UniProtKB/Swiss-Prot
  Laminin UniProtKB/Swiss-Prot
GTEx ENSG00000143341 GTEx
HGNC ID HGNC:19194 ENTREZGENE
Human Proteome Map HMCN1 Human Proteome Map
InterPro cEGF UniProtKB/Swiss-Prot
  Cell_Adh-Cytoskel_Orgn UniProtKB/Swiss-Prot
  EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/Swiss-Prot
  EGF_Ca-bd_CS UniProtKB/Swiss-Prot
  G2_nidogen/fibulin_G2F UniProtKB/Swiss-Prot
  GFP UniProtKB/Swiss-Prot
  Growth_fac_rcpt_cys_sf UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Ig_V-set UniProtKB/Swiss-Prot
  NOTCH1_EGF-like UniProtKB/Swiss-Prot
  TSP1_rpt UniProtKB/Swiss-Prot
  TSP1_rpt_sf UniProtKB/Swiss-Prot
  vWFA_dom_sf UniProtKB/Swiss-Prot
KEGG Report hsa:83872 UniProtKB/Swiss-Prot
NCBI Gene 83872 ENTREZGENE
OMIM 608548 OMIM
PANTHER CONTACTIN 5 UniProtKB/Swiss-Prot
  HEMICENTIN-2-RELATED UniProtKB/Swiss-Prot
Pfam cEGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
  G2F UniProtKB/Swiss-Prot
1 to 40 of 76 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-23 HMCN1  hemicentin 1  ARMD1  age-related macular degeneration 1 (senile macular degeneration)  Data merged from RGD:1346634 737654 PROVISIONAL