Lnnr5 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Lnnr5 (Liver neoplastic nodule remodeling QTL 5) Rattus norvegicus

Symbol: Lnnr5
Name: Liver neoplastic nodule remodeling QTL 5
RGD ID: 738026
Previously known as: Hcrem5
Trait: liver integrity trait   (VT:0010547)    
Measurement Type: liver remodeling tumorous lesion number   (CMO:0001461)    
LOD Score: 3.29
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21359,874,408 - 85,581,182RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01365,008,245 - 91,629,354RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01369,987,122 - 96,143,898RGDRnor5.0
RGSC_v3.41362,072,299 - 94,306,205RGDRGSC3.4
RGSC_v3.11362,086,380 - 94,320,616RGD
Cross Type: intercross
Strains Crossed: COP F344/NRrrc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP  (IEA)
F344/NRrrc  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Polygenic control of hepatocarcinogenesis in Copenhagen xF344 rats De Miglio MR, etal., Int J Cancer 2004 Aug 10;111(1):9-16.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
40945853LOC120096400small nucleolar RNA SNORA17136015142760151558Rat
41182485LOC120096405small nucleolar RNA SNORA17136032876360328895Rat
1592348Dram2-ps1DNA damage regulated autophagy modulator 2, pseudogene 1136041456560415364Rat
41401987LOC120096367U6 spliceosomal RNA136054177860541876Rat
9418531LOC103693673phosphoenolpyruvate carboxykinase [GTP], mitochondrial pseudogene136060900260610979Rat
41220427LOC120096436small nucleolar RNA U3136064539960645487Rat
41089389LOC120096178uncharacterized LOC120096178136095664060957991Rat
11389558LOC108352618endogenous retrovirus group K member 113 Gag polyprotein-like136113043561134600Rat
1592306Rpl29-ps13ribosomal protein L29, pseudogene 13136122183861223353Rat
2324512Smad2-ps2SMAD family member 2, pseudogene 2136138061361382079Rat
41193295LOC120096448U6 spliceosomal RNA136140368061403786Rat
41232549LOC120096420small nucleolar RNA SNORA17136144256361442671Rat
40929865LOC120096464U6 spliceosomal RNA136174148761741592Rat
67366Pla2g4aphospholipase A2 group 4A136187781862022261Rat
41297106Tmem208-ps1transmembrane protein 208, pseudogene 1136215434362155350Rat
6491293Ptgs2osprostaglandin-endoperoxide synthase 2, opposite strand136216000262163710Rat
620349Ptgs2prostaglandin-endoperoxide synthase 2136216393662172193Rat
41145416Moxl-ps1monooxygenase like, pseudogene 1136222634162229836Rat
3277Pdcphosducin136229728162371754Rat
1307830Odr4odr-4 GPCR localization factor homolog136236910962424287Rat
1310664Tprtranslocated promoter region, nuclear basket protein136242431262487502Rat
1308976Prg4proteoglycan 4136248725762504657Rat
1564772Hmcn1hemicentin 1136261546163084524Rat
41377638LOC120096425small nucleolar RNA U13136290295462903058Rat
41058689LOC120096437U4 spliceosomal RNA136316528463165394Rat
1589909Gapdh-ps93Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 93136324705363250921Rat
40993432LOC120096450U6 spliceosomal RNA136335918863359294Rat
1306290Ivns1abpinfluenza virus NS1A binding protein136342704063446701Rat
1308695Swt1SWT1 RNA endoribonuclease homolog136345249463509982Rat
1307890Trmt1ltRNA methyltransferase 1-like136351009763543268Rat
1305491Rnf2ring finger protein 2136355396463584047Rat
71088Niban1niban apoptosis regulator 1136367424063827748Rat
1561496Edem3ER degradation enhancing alpha-mannosidase like protein 3136385828263920538Rat
11419406Rpl23al9ribosomal protein L23A like 9136389499663895471Rat
41062024LOC120096277uncharacterized LOC120096277136395152963957170Rat
1309104C13h1orf21similar to human chromosome 1 open reading frame 21136398258764199676Rat
11508071LOC108352552uncharacterized LOC108352552136415925864169444Rat
41316423LOC120096366U6 spliceosomal RNA136424129164241348Rat
40997506LOC120096278uncharacterized LOC120096278136428266564287061Rat
11379461LOC108352553uncharacterized LOC108352553136432864964402638Rat
1308584Tsen15tRNA splicing endonuclease subunit 15136449021664505591Rat
1304702Colgalt2collagen beta(1-O)galactosyltransferase 2136452364164628295Rat
1308947Ralgdsl1ral guanine nucleotide dissociation stimulator like 1136463448964904170Rat
7657602LOC102551528uncharacterized LOC102551528136467371864682656Rat
1560256Apobec4apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4136488701964895053Rat
1311791Arpc5actin related protein 2/3 complex, subunit 5136490450464913413Rat
1587499Rpl15-ps10ribosomal protein L15, pseudogene 10136495126164952106Rat
1309424Ncf2neutrophil cytosolic factor 2136495562264986144Rat
1310761Smg7SMG7 nonsense mediated mRNA decay factor136498614565050698Rat
1586370Ppid-ps22peptidylprolyl isomerase D, pseudogene 22136507127565072221Rat
6500808Rpl15-ps5ribosomal protein L15, pseudogene 5136508136565082179Rat
1586357Rps2-ps37ribosomal protein S2, pseudogene 37136510007265100981Rat
1307331Nmnat2nicotinamide nucleotide adenylyltransferase 2136510595065277350Rat
41162937LOC120096279uncharacterized LOC120096279136513564165145949Rat
621053Lamc2laminin subunit gamma 2136528466465344164Rat
621052Lamc1laminin subunit gamma 1136537437265501492Rat
1305609Shcbp1lSHC binding and spindle associated 1 like136556886365599155Rat
1308548Dhx9DExH-box helicase 9136560232265639098Rat
1549702NplN-acetylneuraminate pyruvate lyase136565509965697464Rat
2321674S100a11-ps1S100 calcium binding protein A11, pseudogene 1136575661265759510Rat
3571Rgs8regulator of G-protein signaling 8136580470365848955Rat
1589741Rgs16regulator of G-protein signaling 16136588766865892862Rat
727933Rnaselribonuclease L136589499065910354Rat
1584051Rgsl1regulator of G-protein signaling like 1136591505265969846Rat
41086608LOC120096281heterogeneous nuclear ribonucleoprotein A3-like136594073265942250Rat
2710Glulglutamate-ammonia ligase136596905366035121Rat
735067Rgsl2hregulator of G-protein signaling like 2 homolog (mouse)136597369565974702Rat
1586783Teddm1btransmembrane epididymal protein 1B136600018866002536Rat
1593124Teddm1atransmembrane epididymal protein 1A136601744866018750Rat
41250377LOC120096282uncharacterized LOC120096282136612708666138232Rat
11417578Gng5-ps5G protein subunit gamma 5, pseudogene 5136618782366188322Rat
41032515LOC120096399small nucleolar RNA SNORA17136621940066219531Rat
41007714LOC120096284uncharacterized LOC120096284136622022266222911Rat
41188211Eif3m-ps1eukaryotic translation initiation factor 3, subunit M, pseudogene 1136622126266223067Rat
2322549Ccnb1ip1-ps3cyclin B1 interacting protein 1, pseudogene 3136631153466312300Rat
2323778Zfp648zinc finger protein 648136633709866344963Rat
2246Cacna1ecalcium voltage-gated channel subunit alpha1 E136657465967063443Rat
11511033LOC108352605ubiquitin-conjugating enzyme E2 G1 pseudogene136660363666607613Rat
7660382LOC10255266740S ribosomal protein S27-like136719741767197656Rat
7656010LOC102552819uncharacterized LOC102552819136725586867260117Rat
41265064LOC120096369U6 spliceosomal RNA136726326267263367Rat
69252Ier5immediate early response 5136727013467272226Rat
11442089LOC108352557uncharacterized LOC108352557136727525867284186Rat
1593291Mr1major histocompatibility complex, class I-related136729836267317985Rat
61915Stx6syntaxin 6136733232967378580Rat
1304622Kiaa1614KIAA1614 homolog136738891667427392Rat
1306554Xpr1xenotropic and polytropic retrovirus receptor 1136744120567585950Rat
7544266LOC102553685uncharacterized LOC102553685136762168967650996Rat
1561635Rps17l3ribosomal protein S17 like 3136768129567681991Rat
7606491LOC102547468uncharacterized LOC102547468136769957567702579Rat
1305030Acbd6acyl-CoA binding domain containing 6136772678667863392Rat
5128565LOC100526819deoxyuridine triphosphatase pseudogene136776429967765086Rat
1308044Lhx4LIM homeobox 4136787710967917219Rat
41042311LOC12009628660S ribosomal protein L37-like136789489667896073Rat
68957Qsox1quiescin sulfhydryl oxidase 1136794978067987434Rat
621162Cep350centrosomal protein 350136802332768164478Rat
41192305LOC120096287uncharacterized LOC120096287136803731568056961Rat
1561738Ifitm2-ps2interferon induced transmembrane protein 2, pseudogene 2136818713168187808Rat
628851Tor1aip1torsin 1A interacting protein 1136819668168226121Rat
735059Tor1aip2torsin 1A interacting protein 2136822522668256536Rat
1565760Fam163afamily with sequence similarity 163, member A136826286768341323Rat
41363484LOC120096289uncharacterized LOC120096289136829342868299278Rat
1598123Atp5f1c-ps3ATP synthase F1 subunit gamma, pseudogene 3136837544268377184Rat
1598107Eef1a1-ps15eukaryotic translation elongation factor 1 alpha 1, pseudogene 15136838982868391692Rat
1307078Tdrd5tudor domain containing 5136839418068447745Rat
620461Nphs2NPHS2 stomatin family member, podocin136844872068461312Rat
1566124Axdnd1axonemal dynein light chain domain containing 1136847195768544788Rat
621641Soat1sterol O-acyltransferase 1136855227468597529Rat
1590898Abl2ABL proto-oncogene 2, non-receptor tyrosine kinase136867370268770846Rat
41143873LOC120096449U6 spliceosomal RNA136868913868689244Rat
7677982Dclre1b-ps1DNA cross-link repair 1B, pseudogene 1136871882868720740Rat
1310101Tor3atorsin family 3, member A136876989368798738Rat
1311162Fam20bFAM20B, glycosaminoglycan xylosylkinase136880166368839979Rat
1592117Eno1l2enolase 1 like 2136890152168913658Rat
1311537Ralgps2Ral GEF with PH domain and SH3 binding motif 2136892467469104637Rat
1598128Angptl1angiopoietin-like 1136896318668981649Rat
1595460Tex35testis expressed 35136922047869232678Rat
7603387Clec20aC-type lectin domain containing 20A136923276969258134Rat
1307566Rasal2RAS protein activator like 2136927988269569161Rat
6488950Srsf6-ps2serine and arginine rich splicing factor 6, pseudogene 2136930786069311387Rat
15941772810025M15RiklRIKEN cDNA 2810025M15 gene like136956948569576111Rat
1304982Cryzl2crystallin zeta like 2136961260569655018Rat
621658Sec16bSEC16 homolog B, endoplasmic reticulum export factor136966575769727199Rat
40946709LOC120096393small nucleolar RNA SNORA48136978564869785786Rat
41187100LOC120096293uncharacterized LOC120096293136980137769886020Rat
708419Brinp2BMP/retinoic acid inducible neural specific 2137043100670532766Rat
727799Astn1astrotactin 1137053742370855440Rat
2325487Mir488microRNA 488137068306470683142Rat
1591785Pappa2pappalysin 2137087391871147874Rat
1596806Cdca4-ps1cell division cycle associated 4, pseudogene 1137111330571114442Rat
1304773Cop1COP1, E3 ubiquitin ligase137146716471561826Rat
9685080Mir1843bmicroRNA 1843b137155154871551609Rat
3886Tnrtenascin R137175171472172731Rat
2311260Kiaa0040KIAA0040 ortholog137227451972312103Rat
1306002Tnntenascin N137231916072386362Rat
41323203LOC120096295uncharacterized LOC120096295137238190372393438Rat
1309432Mrps14mitochondrial ribosomal protein S14137242916872434915Rat
1303146Cacybpcalcyclin binding protein137243748572447810Rat
1304620Rabgap1lRAB GTPase activating protein 1-like137246411473059845Rat
41304642LOC120096380small nucleolar RNA SNORA67137256813872568277Rat
1587949Gpr52G protein-coupled receptor 52137280026572804989Rat
41324919LOC120096410small nucleolar RNA SNORA17137286767072867801Rat
2321320Rpl7l1-ps1ribosomal protein L7-like 1, pseudogene 1137307053173071358Rat
1563512Rc3h1ring finger and CCCH-type domains 1137317407573245762Rat
11505411Bola2l2bolA family member 2 like 2137320381173207963Rat
1307404Serpinc1serpin family C member 1137325720873271476Rat
1308731Zbtb37zinc finger and BTB domain containing 37137327192073303427Rat
621549Gas5growth arrest specific 5137330361173306932Rat
41271594LOC120096384small nucleolar RNA SNORD74137330382973303909Rat
40994115LOC120096422small nucleolar RNA SNORD75137330431473304375Rat
41224292LOC120096374small nucleolar RNA SNORD24137330452573304606Rat
41102469LOC120096385small nucleolar RNA SNORD44137330513773305197Rat
41128275Snord78small nucleolar RNA, C/D box 78137330543173305496Rat
41337361LOC120096376small nucleolar RNA SNORD79137330581073305894Rat
41364214LOC120096386small nucleolar RNA snR60/Z15/Z230/Z193/J17137330606073306140Rat
41251985LOC120096383small nucleolar RNA SNORD47137330647673306553Rat
41168241Snord81Small nucleolar RNA SNORD81137330670073306776Rat
1308286Dars2aspartyl-tRNA synthetase 2 (mitochondrial)137330872673336558Rat
1311868Cenplcentromere protein L137333723573352115Rat
9398754LOC10369211540S ribosomal protein S10 pseudogene137335874773359425Rat
1309490Klhl20kelch-like family member 20137336345173408293Rat
1565820Slc9c2solute carrier family 9, member C2 (putative)137342468373524244Rat
1311153Ankrd45ankyrin repeat domain 45137342476673450466Rat
2322986Cox7c-ps1Cytochrome c oxidase subunit 7C, pseudogene 1137343219073432909Rat
7711400Tex50testis expressed 50137343337573438787Rat
71005Prdx6peroxiredoxin 6137352874673539295Rat
7594218LOC102552207uncharacterized LOC102552207137353833873558780Rat
1588198Actg1-ps4actin, gamma 1, pseudogene 4137365431373656160Rat
11487222Qrsl1l1glutaminyl-tRNA amidotransferase subunit QRSL1 like 1137369160573692616Rat
619816Tnfsf4TNF superfamily member 4137372332973746809Rat
40955712LOC120096296uncharacterized LOC120096296137378340873796165Rat
9340199LOC103692000uncharacterized LOC103692000137378404473833312Rat
1305066Tnfsf18TNF superfamily member 18137383347873907249Rat
1592116Gapdh-ps108Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 108137395020873951423Rat
7559320LOC102553985uncharacterized LOC102553985137411812174123585Rat
3880FaslgFas ligand137415151974172760Rat
735185SucoSUN domain containing ossification factor137419280874257896Rat
9391883LOC103692015uncharacterized LOC103692015137429587674307920Rat
1309106C13h1orf105similar to human chromosome 1 open reading frame 105137431332074356322Rat
1311337Pigcphosphatidylinositol glycan anchor biosynthesis, class C137434361974346148Rat
727949Dnm3dynamin 3137435904374838135Rat
7718449LOC102554129uncharacterized LOC102554129137436896574441367Rat
40983846LOC120096413small nucleolar RNA SNORA17137453667874536749Rat
41160019LOC120096419small nucleolar RNA SNORA17137453705474537152Rat
2325378Mir199a2microRNA 199a-2137458295474583063Rat
2325548Mir214microRNA 214137458837474588481Rat
4888566Mir3120microRNA 3120137458837674588492Rat
41319216LOC120096458U6 spliceosomal RNA137476459874764696Rat
7537425LOC102554073uncharacterized LOC102554073137483792274841823Rat
7706115LOC102555077uncharacterized LOC102555077137485050174853120Rat
1311526Mettl13methyltransferase 13, eEF1A N-terminus and K55137488615174899937Rat
41165488LOC120096299uncharacterized LOC120096299137491488974916011Rat
1309753Vamp4vesicle-associated membrane protein 4137491987274942791Rat
620430Myocmyocilin137497673074987128Rat
1566064Prrc2cproline-rich coiled-coil 2C137500399575073701Rat
7598395LOC102555487uncharacterized LOC102555487137514960175157370Rat
628601Fmo4flavin containing dimethylaniline monoxygenase 4137515468375172874Rat
2622Fmo1flavin containing dimethylaniline monoxygenase 1137518218475214439Rat
628600Fmo2flavin containing dimethylaniline monoxygenase 2137522114975244377Rat
1594389Hsp90aa1-ps13heat shock protein 90 alpha family class A member 1, pseudogene 13137525157375254102Rat
1559491Fmo6flavin containing monooxygenase 6137525661775288167Rat
619761Fmo3flavin containing dimethylaniline monoxygenase 3137530936775334915Rat
1564745Mroh9maestro heat-like repeat family member 9137538780075443118Rat
40929598LOC120096402small nucleolar RNA SNORA17137540782675407928Rat
9112028LOC10369202040S ribosomal protein S8 pseudogene137559070675593669Rat
628884Prrx1paired related homeobox 1137560077775671896Rat
41312610LOC120096300uncharacterized LOC120096300137566651575684794Rat
1584663Cct6a-ps8chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 8137569179975693451Rat
1564990Gorabgolgin, RAB6-interacting137574567875762307Rat
1564106Ntmt2N-terminal Xaa-Pro-Lys N-methyltransferase 2137605068376093972Rat
1305191Kifap3kinesin-associated protein 3137612770276264654Rat
1308992Scyl3SCY1 like pseudokinase 3137627842876303038Rat
41306939LOC120096301uncharacterized LOC120096301137629502176297631Rat
1563470FirrmFIGNL1 interacting regulator of recombination and mitosis137630191476345842Rat
1306783Mettl18methyltransferase 18, RPL3 N3(tau)-histidine137634588876348798Rat
7603484LOC102555981uncharacterized LOC102555981137635116876367038Rat
1592115Ppid-ps19peptidylprolyl isomerase D, pseudogene 19137635887476365328Rat
1598005Ak2-ps2adenylate kinase 2, pseudogene 2137639204276392929Rat
3654Seleselectin E137640284176412741Rat
1561908Cops8-ps2COP9 signalosome subunit 8, pseudogene 1137641372176414261Rat
3655Sellselectin L137641696976436444Rat
3656Selpselectin P137647622976511846Rat
1589758F5coagulation factor V137651350976583106Rat
1308611Slc19a2solute carrier family 19 member 2137660197576616175Rat
1309708Ccdc181coiled-coil domain containing 181137662456776638224Rat
1562452Blzf1basic leucine zipper nuclear factor 1137664175776656977Rat
619880Nme7NME/NM23 family member 7137665730376786768Rat
2170Atp1b1ATPase Na+/K+ transporting subunit beta 1137678658076807096Rat
41056279LOC120096205uncharacterized LOC120096205137690473376910108Rat
41240085LOC120096206uncharacterized LOC120096206137692958176941817Rat
41216393LOC120096446U6 spliceosomal RNA137701156277011667Rat
1307176Dptdermatopontin137712322477151646Rat
7512173LOC102546371uncharacterized LOC102546371137713923677195397Rat
11372680LOC108352565uncharacterized LOC108352565137719186577214148Rat
41098812LOC120096432U2 spliceosomal RNA137724815277248300Rat
620452Xcl1X-C motif chemokine ligand 1137724868777252343Rat
41099898LOC120096302uncharacterized LOC120096302137729022177332714Rat
41169092LOC120096303uncharacterized LOC120096303137743839377441736Rat
1310145Tbx19T-box transcription factor 19137745084877484475Rat
1310623Sft2d2SFT2 domain containing 2137748477877504123Rat
1310442TiprlTOR signaling pathway regulator137752717677552026Rat
1563245Gpr161G protein-coupled receptor 161137757825777623661Rat
1561961Dcaf6DDB1 and CUL4 associated factor 6137762625777727645Rat
1563422Mpc2mitochondrial pyruvate carrier 2137772817677747664Rat
708450Adcy10adenylate cyclase 10137774775277833952Rat
1359140Mpzl1myelin protein zero-like 1137785246777889305Rat
11466947Trnap-agg14transfer RNA proline (anticodon AGG) 14137789506377895134Rat
11412620Trnap-cgg3transfer RNA proline (anticodon CGG) 3137789569577895766Rat
1304715Rcsd1RCSD domain containing 1137790189877964309Rat
11416577LOC10835264840S ribosomal protein S28 pseudogene137797181177973063Rat
40965556LOC120096304uncharacterized LOC120096304137798686477990913Rat
41363479LOC120096305uncharacterized LOC120096305137799537778003580Rat
1306804Creg1cellular repressor of E1A-stimulated genes 1137801981478032310Rat
2305Cd247Cd247 molecule137804330278118437Rat
621689Pou2f1POU class 2 homeobox 1137812061778263306Rat
1560598Styxl2serine/threonine/tyrosine interacting like 2137834936178378480Rat
1306711Gpa33glycoprotein A33137838114178414765Rat
1309333Maelmaelstrom spermatogenic transposon silencer137845707378496657Rat
2321223LOC100364335cold shock domain-containing protein E1-like137847756078481251Rat
1596420Ildr2immunoglobulin-like domain containing receptor 2137851877078580627Rat
41027467LOC120096307uncharacterized LOC120096307137855513978558494Rat
1306774Tada1transcriptional adaptor 1137863290878646863Rat
1308951Pogkpogo transposable element derived with KRAB domain137864744778663363Rat
41162129LOC120096308uncharacterized LOC120096308137866281478693735Rat
1559819Fmo13flavin-containing monooxygenase 13137872639878738178Rat
1595097Fmolflavin containing dimethylaniline monoxygenase like137878975978804900Rat
1595083Fmo9flavin containing monooxygenase 9137882008078841075Rat
11440287LOC108352566uncharacterized LOC108352566137906383679069731Rat
1564387Fam78bfamily with sequence similarity 78, member B137916239379250958Rat
41292405Rpl29-ps20ribosomal protein L29, pseudogene 20137925556679257575Rat
41094150LOC120096426small nucleolar RNA U13137929668479296791Rat
620742Uck2uridine-cytidine kinase 2137938080779438121Rat
1359178Tmco1transmembrane and coiled-coil domains 1137946022979483557Rat
68409Aldh9a1aldehyde dehydrogenase 9 family, member A1137950573879522539Rat
11494075Nop10l2NOP10 ribonucleoprotein like 2137950954679510189Rat
1306373Mgst3microsomal glutathione S-transferase 3137952654179547479Rat
6497316Ostf1-ps1osteoclast stimulating factor 1, pseudogene 1137954949279550765Rat
41290003LOC120096311uncharacterized LOC120096311137956446879595563Rat
1312014Lrrc52leucine rich repeat containing 52137959724479620640Rat
11416093LOC108352569uncharacterized LOC108352569137962049779662621Rat
7718804LOC102553924uncharacterized LOC102553924137970751279712787Rat
620046Rxrgretinoid X receptor gamma137974343079785173Rat
1304784Lmx1aLIM homeobox transcription factor 1 alpha137983461479978253Rat
1592612Pafah1b3-ps1platelet-activating factor acetylhydrolase 1b, catalytic subunit 3, pseudogene 1138009771880098682Rat
41208252LOC120096312uncharacterized LOC120096312138024878180254282Rat
1308213Pbx1PBX homeobox 1138027876680588563Rat
1598302Rpl7a-ps2ribosomal protein L7a, pseudogene 2138070067780701453Rat
41223721LOC120096430U2 spliceosomal RNA138101727081017344Rat
1591400Rpl7-ps4ribosomal protein L7, pseudogene 4138114052381143120Rat
9466182LOC103692065uncharacterized LOC103692065138123451881264218Rat
1307952Nuf2NUF2 component of NDC80 kinetochore complex138169367581722765Rat
2321067Timm23-ps7translocase of inner mitochondrial membrane 23, pseudogene 7138172285281799780Rat
3568Rgs5regulator of G-protein signaling 5138184825481885053Rat
3567Rgs4regulator of G-protein signaling 4138193677581943103Rat
1560672Ccdc190coiled-coil domain containing 190138214716182154863Rat
2837Hsd17b7hydroxysteroid (17-beta) dehydrogenase 7138217007982190018Rat
619855Ddr2discoidin domain receptor tyrosine kinase 2138219362382318229Rat
1561967Uap1UDP-N-acetylglucosamine pyrophosphorylase 1138234294682377558Rat
7568040LOC102549303uncharacterized LOC102549303138237765282378893Rat
2968Uhmk1U2AF homology motif kinase 1138239664682416292Rat
329845493LOC130014439uncharacterized LOC130014439138241637582427262Rat
1559938Smsl1spermine synthase like 1138243550082436942Rat
1589042Sh2d1b2SH2 domain containing 1B2138243741882461511Rat
1563935Sh2d1bSH2 domain containing 1B138248507682519401Rat
2320873C13h1orf226similar to human chromosome 1 open reading frame 226138253058982538676Rat
1565283Spata46spermatogenesis associated 46138254118382544808Rat
620106Nos1apnitric oxide synthase 1 adaptor protein138254779982820999Rat
41309715LOC120096313uncharacterized LOC120096313138263815382642859Rat
7749071LOC102550090uncharacterized LOC102550090138282110282823901Rat
1309257Olfml2bolfactomedin-like 2B138286941482906607Rat
1305471Atf6activating transcription factor 6138292757983106381Rat
41361058LOC120096368U6 spliceosomal RNA138307324083073344Rat
6491355LOC10091172840S ribosomal protein S27-like138308281783083112Rat
2318303LOC100362384ferritin light chain 1-like138311728083118226Rat
1589757Dnmt3b-ps2DNA methyltransferase 3B, pseudogene 2138311969683121858Rat
68375Dusp12dual specificity phosphatase 12138312219283131800Rat
41325170LOC120096314uncharacterized LOC120096314138313422883139869Rat
1563018FcrlbFc receptor-like B138314868583157157Rat
1306176FcrlaFc receptor-like A138316045383170170Rat
40978283LOC120096461U1 spliceosomal RNA138317561783175780Rat
631331Fcgr2bFc gamma receptor 2B138319125383207778Rat
1303067Fcgr3aFc gamma receptor 3A138324990583259921Rat
11462796Trnan-guu12transfer RNA asparagine (anticodon GUU) 12138326399683264069Rat
11386729Trnad-guc6transfer RNA aspartic acid (anticodon GUC) 6138326745483267525Rat
11426647Trnag-ucc4transfer RNA glycine (anticodon UCC) 4138326839183268462Rat
11519000Trnal-cag1transfer RNA leucine (anticodon CAG) 1138326898783269069Rat
1586661Hspa6l-ps1heat shock protein family A (Hsp70) member 6 like, pseudogene 1138327317683274317Rat
11448281Trnag-gcc3transfer RNA glycine (anticodon GCC) 3138327528383275353Rat
71069Fcgr2aFc gamma receptor 2A138328078283297535Rat
11506265Trnad-guc10transfer RNA aspartic acid (anticodon GUC) 10138329635683296427Rat
11469353Trnal-cag4transfer RNA leucine (anticodon CAG) 4138329701183297093Rat
1594388Fcgr2al1Fc gamma receptor 2A like 1138330287483315744Rat
11518338Trnad-guc11transfer RNA aspartic acid (anticodon GUC) 11138331617283316243Rat
11416840Trnal-cag5transfer RNA leucine (anticodon CAG) 5138331682683316908Rat
9127992Fcgr2a-ps1Fc gamma receptor 2A, pseudogene 1138332284083331714Rat
11518817Trnae-cuc6transfer RNA glutamic acid (anticodon CUC) 6138333736983337440Rat
11454395Trnag-ucc5transfer RNA glycine (anticodon UCC) 5138333787483337945Rat
11413703Trnad-guc7transfer RNA aspartic acid (anticodon GUC) 7138333841283338483Rat
11438814Trnal-cag2transfer RNA leucine (anticodon CAG) 2138333905983339141Rat
41338342Trnag-gcc14transfer RNA glycine (anticodon GCC) 14138334004783340117Rat
41246266Trnae-cuc12transfer RNA glutamic acid (anticodon CUC) 12138334636983346440Rat
11428758Trnag-ucc8transfer RNA glycine (anticodon UCC) 8138334688083346951Rat
41163880Trnad-guc15transfer RNA aspartic acid (anticodon GUC) 15138334741883347489Rat
41325826Trnal-cag12transfer RNA leucine (anticodon CAG) 12138334806583348147Rat
11395224Trnag-gcc6transfer RNA glycine (anticodon GCC) 6138334902583349095Rat
41362358Trnae-cuc13transfer RNA glutamic acid (anticodon CUC) 13138335533783355408Rat
41004142Trnag-ucctransfer RNA glycine (anticodon UCC)138335584883355919Rat
41007678Trnad-guctransfer RNA aspartic acid (anticodon GUC)138335638683356457Rat
41237828Trnad-guc17transfer RNA aspartic acid (anticodon GUC) 17138335638683356457Rat
41382661Trnal-cag14transfer RNA leucine (anticodon CAG) 14138335703383357115Rat
40984440Trnag-gcctransfer RNA glycine (anticodon GCC)138335798983358059Rat
40938478Trnae-cuctransfer RNA glutamic acid (anticodon CUC)138336428083364351Rat
41279699Trnae-cuc10transfer RNA glutamic acid (anticodon CUC) 10138336428083364351Rat
41213261Trnag-ucc9transfer RNA glycine (anticodon UCC) 9138336479183364862Rat
41381727Trnad-guc16transfer RNA aspartic acid (anticodon GUC) 16138336532983365400Rat
41104094Trnal-cagtransfer RNA leucine (anticodon CAG)138336597683366058Rat
41007014Trnag-gcc12transfer RNA glycine (anticodon GCC) 12138336693683367006Rat
41123084Trnae-cuc11transfer RNA glutamic acid (anticodon CUC) 11138337317683373247Rat
41228731Trnad-guc18transfer RNA aspartic acid (anticodon GUC) 18138337419883374269Rat
40938478Trnae-cuctransfer RNA glutamic acid (anticodon CUC)138346801183468081Rat
41274182Trnag-ucc10transfer RNA glycine (anticodon UCC) 10138346851583468586Rat
41231494Trnad-guc14transfer RNA aspartic acid (anticodon GUC) 14138346905583469126Rat
41306063Trnal-cag11transfer RNA leucine (anticodon CAG) 11138346970483469786Rat
40984440Trnag-gcctransfer RNA glycine (anticodon GCC)138347066283470732Rat
41352249Trnag-gcc13transfer RNA glycine (anticodon GCC) 13138347066283470732Rat
11518817Trnae-cuc6transfer RNA glutamic acid (anticodon CUC) 6138347712283477193Rat
11454395Trnag-ucc5transfer RNA glycine (anticodon UCC) 5138347762583477696Rat
11413703Trnad-guc7transfer RNA aspartic acid (anticodon GUC) 7138347816383478234Rat
41261179Trnal-cag10transfer RNA leucine (anticodon CAG) 10138347881183478893Rat
11457523Trnag-gcc4transfer RNA glycine (anticodon GCC) 4138347978283479852Rat
11400800Trnae-cuc7transfer RNA glutamic acid (anticodon CUC) 7138348618283486253Rat
11357429Trnag-ucc6transfer RNA glycine (anticodon UCC) 6138348668583486756Rat
41007678Trnad-guctransfer RNA aspartic acid (anticodon GUC)138348722383487294Rat
41219038Trnal-cag15transfer RNA leucine (anticodon CAG) 15138348787183487953Rat
11457523Trnag-gcc4transfer RNA glycine (anticodon GCC) 4138348881883488888Rat
11357429Trnag-ucc6transfer RNA glycine (anticodon UCC) 6138349574383495814Rat
11413331Trnad-guc8transfer RNA aspartic acid (anticodon GUC) 8138349636483496435Rat
11363202Trnag-gcc5transfer RNA glycine (anticodon GCC) 5138349969783499767Rat
2313878Znrd1-ps1zinc ribbon domain containing 1, pseudogene 1138351089583511537Rat
11387238Trnal-cag3transfer RNA leucine (anticodon CAG) 3138351451883514600Rat
11454394Trnad-guc9transfer RNA aspartic acid (anticodon GUC) 9138351507183515142Rat
11498207Trnag-ucc7transfer RNA glycine (anticodon UCC) 7138351557183515642Rat
11398805Trnae-cuc8transfer RNA glutamic acid (anticodon CUC) 8138351590383515974Rat
11388196Trnav-cac3transfer RNA valine (anticodon CAC) 3138352375883523830Rat
1562658Cfap126cilia and flagella associated protein 126138352665783542552Rat
4145546LOC100526655ribosomal protein L29 pseudogene138353173983532345Rat
1359454Sdhcsuccinate dehydrogenase complex subunit C138354465283565560Rat
3109Mpzmyelin protein zero138357081183576680Rat
1593809Pcp4l1Purkinje cell protein 4-like 1138358899283612631Rat
621400Nr1i3nuclear receptor subfamily 1, group I, member 3138363294083638193Rat
1562006Tomm40ltranslocase of outer mitochondrial membrane 40 like138363669283641654Rat
2131Apoa2apolipoprotein A2138364446083646358Rat
2599Fcer1gFc epsilon receptor Ig138364944783654248Rat
1307109Ndufs2NADH:ubiquinone oxidoreductase core subunit S2138365440283671474Rat
621242Adamts4ADAM metallopeptidase with thrombospondin type 1 motif, 4138367055683680045Rat
1359221B4galt3beta-1,4-galactosyltransferase 3138369137883697448Rat
1310543Ppoxprotoporphyrinogen oxidase138369766183701998Rat
1588822Usp21ubiquitin specific peptidase 21138370267283709215Rat
1303313Ufc1ubiquitin-fold modifier conjugating enzyme 1138370932983719762Rat
7700680Gng5-ps1G protein subunit gamma 5, pseudogene 1138372562883727878Rat
620050Dedddeath effector domain-containing138375587483769982Rat
727821Nit1nitrilase 1138376988883773324Rat
1591406Pfdn2prefoldin subunit 2138377230183791367Rat
1561025Klhdc9kelch domain containing 9138379039083794080Rat
1559826Nectin4nectin cell adhesion molecule 4138380258983821711Rat
1561419Arhgap30Rho GTPase activating protein 30138382229083843634Rat
620974Usf1upstream transcription factor 1138384523083854875Rat
2323815Tstd1thiosulfate sulfurtransferase like domain containing 1138385342183854875Rat
621842F11rF11 receptor138387379783897388Rat
2323611Ptmal5prothymosin alpha like 5138392072383922032Rat
41231914LOC120096440U5 spliceosomal RNA138393188183931996Rat
1561048Itln1intelectin 1138393223483958243Rat
1587602Mif-ps9macrophage migration inhibitory factor, pseudogene 9138396310983963614Rat
41389617LOC120093159natural killer cell receptor 2B4-like138397913484002215Rat
11402621LOC10835257260S ribosomal protein L31 pseudogene138400006884000983Rat
68400Cd244l1CD244 molecule like 1138401888784036612Rat
9330179Cd244CD244 molecule138405133984082864Rat
1308341Ly9lymphocyte antigen 9138407934584100783Rat
7671987LOC102549964uncharacterized LOC102549964138411882084129028Rat
1560190Slamf7SLAM family member 7138413565684154528Rat
9329753LOC103692286uncharacterized LOC103692286138415460084184860Rat
620620Cd48Cd48 molecule138418488484209144Rat
1560634Slamf1signaling lymphocytic activation molecule family member 1138427031684305497Rat
9431477LOC103692288uncharacterized LOC103692288138428700284325493Rat
1564553Cd84CD84 molecule138432758084367153Rat
1561848Slamf6SLAM family member 6138438456184405300Rat
1585268Rps15-ps16ribosomal protein S15, pseudogene 16138442131284421729Rat
1309442Vangl2VANGL planar cell polarity protein 2138446273184489404Rat
1310261Nhlh1nescient helix loop helix 1138451734784522548Rat
631418Ncstnnicastrin138453044284546454Rat
1310525CopaCOPI coat complex subunit alpha138454648384586879Rat
1306913Pex19peroxisomal biogenesis factor 19138459227784608793Rat
1308513Dcaf8DDB1 and CUL4 associated factor 8138460983884667025Rat
1306055Pea15proliferation and apoptosis adaptor protein 15138465781584667437Rat
1586677Casq1calsequestrin 1138467064884680339Rat
61952Atp1a4ATPase Na+/K+ transporting subunit alpha 4138468376684719790Rat
2168Atp1a2ATPase Na+/K+ transporting subunit alpha 2138472959784754544Rat
1311500Igsf8immunoglobulin superfamily, member 8138477034884781534Rat
621440Kcnj9potassium inwardly-rectifying channel, subfamily J, member 9138478082684787928Rat
61822Kcnj10potassium inwardly-rectifying channel, subfamily J, member 10138480202684835383Rat
71041Pigmphosphatidylinositol glycan anchor biosynthesis, class M138483832984842026Rat
9205262LOC103692291uncharacterized LOC103692291138487114684872631Rat
11355415LOC108352575uncharacterized LOC108352575138490018384924193Rat
11418586LOC108353436uncharacterized LOC108353436138492426084925715Rat
1305945Slamf9SLAM family member 9138494189684944749Rat
1304566Igsf9immunoglobulin superfamily, member 9138494864384965616Rat
1310840Tagln2transgelin 2138496698084973973Rat
1561559Cfap45cilia and flagella associated protein 45138498947485012880Rat
41061811LOC120096318uncharacterized LOC120096318138500516185018197Rat
1562464Vsig8V-set and immunoglobulin domain containing 8138502317785031364Rat
1306263Slamf8SLAM family member 8138504772985057571Rat
1563939Fcrl6Fc receptor-like 6138506270985072308Rat
1309202Dusp23dual specificity phosphatase 23138509789985100054Rat
2411CrpC-reactive protein138513538485175178Rat
11428601LOC10835262160S ribosomal protein L6 pseudogene138523853785250025Rat
11376557Rps29-ps16ribosomal protein S29, pseudogene 16138528463885284949Rat
1334438Or10as1-ps1olfactory receptor family 10 subfamily AS member 1, pseudogene 1138535825685359000Rat
68322Apcsamyloid P component, serum138537321985374195Rat
40960097LOC120096401small nucleolar RNA SNORA17138541292985413048Rat
11393231LOC108352577uncharacterized LOC108352577138542401185436529Rat
1333702Or10j5olfactory receptor family 10 subfamily J member 5138543065585431584Rat
1332837Or10at1-ps1olfactory receptor family 10 subfamily AT member 1, pseudogene 1138553163685532241Rat
1334126Olr1578-psolfactory receptor pseudogene 1578138554676985547308Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10204D13Arb11215138475327784753511Ratregion
10205D13Mgh17399138475311384753510Ratregion
11115D13Mgh7418136202237462022792Ratregion
33796D13Mit3222137474185474742070Ratregion
34534D13Mgh5140136105793861058078Ratregion
34540D13Mgh14238138475531884755556Ratregion
33604D13Mit5251137474191674742160Ratregion
33733D13Mit2226135987440859874610Ratregion
36033D13Rat29162136490158664901750Ratregion
36197D13Rat42169137143707171437240Ratregion
37240D13Rat63103137704678777046890Ratregion
37554D13Rat57150138075325680753406Ratregion
35392D13Rat28185136545068665450871Ratregion
36920D13Rat46224137402391874024211Ratregion
36920D13Rat46224137402398774024211Ratregion
37844D13Rat85140136906051969060785Ratregion
37844D13Rat85140136906064969060785Ratregion
37886D13Rat67225136417800064178213Ratregion
36506D13Rat32108137486211774862225Ratregion
36727D13Rat31163136394622063946383Ratregion
36779D13Rat43131137278878572788916Ratregion
34769D13Rat33171137847270778472868Ratregion
35607D13Rat44139136836319368363334Ratregion
39942D13Rat137249136626377066263995Ratregion
39950D13Rat133115138300588983006034Ratregion
38058D13Rat99206136457144964571657Ratregion
38170D13Rat61205136517047665170683Ratregion
40476D13Rat155146137189223171892377Ratregion
40568D13Rat152137138558107385581182Ratregion
40656D13Rat131147137731293377313088Ratregion
38396D13Rat77224136093329860933518Ratregion
38582D13Rat56228138169065581690878Ratregion
38662D13Rat102123136504398065044107Ratregion
38968D13Rat69207137117426571174472Ratregion
38990D13Rat58249136826957668269837Ratregion
39544D13Rat138224136703781067038022Ratregion
41967D13Arb10228136105793161058159Ratregion
41970D13Arb13127138473106684731198Ratregion
42995D13Rat151205136182562661825824Ratregion
42998D13Rat181228136343229863432517Ratregion
43000D13Rat182227136332902363329242Ratregion
43001D13Rat183212137752353677523740Ratregion
43002D13Rat184227137927434979274584Ratregion
43004D13Rat185205138383241983832611Ratregion
42382D13Rat196246136523036065230582Ratregion
40754D13Rat130201136916318869163391Ratregion
41008D13Rat129342136640769766408058Ratregion
41112D13Rat132228137829113278291378Ratregion
41900D13Rat190141138015760680157741Ratregion
44552D9Wox21136137174568471745742Ratregion
45055D13Got43211136485477164854979Ratregion
45056D13Got42154136341081363410964Ratregion
45058D13Got41245136233172262331967Ratregion
45059D13Got48182136762913167629313Ratregion
45062D13Got55173137647835976478532Ratregion
45064D13Got51124136953576169535887Ratregion
45067D13Got111192137558793975588131Ratregion
45068D13Got52125137236924072369364Ratregion
45069D13Got53161137348495073485113Ratregion
45070D13Got61235137769764277697877Ratregion
45071D13Got57252137641583476416086Ratregion
45072D13Got56280137712785877128138Ratregion
45073D13Got66160138004374280043904Ratregion
45075D13Got60125137749626777496394Ratregion
45076D13Got58198137627400076274198Ratregion
45077D13Got63211137796034577960556Ratregion
45079D13Wox8111138473078884730899Ratregion
45081D13Got72254138473752984737783Ratregion
45086D13Got71148138329094583291091Ratregion
45089D13Got70117138353044983530566Ratregion
625774D13Got45269136670682566707096Ratregion
625775D13Got68166138021699380217157Ratregion
60043D13Got40127136412360864123735Ratregion
60044D13Got44207136573458265734789Ratregion
60045D13Got46185136703775967037944Ratregion
60048D13Got50133136881268668812819Ratregion
60049D13Got59177138259800782598186Ratregion
60050D13Got62224138173064481730867Ratregion
60051D13Got65198138178908981789292Ratregion
60052D13Got67152138173508181735233Ratregion
62439D13Uia3236136564197465642207Ratregion
66505D13Mco2274136201766562017934Ratregion
66513D13Mco6350138501485385015182Ratregion
66515D13Mco7203137668814976688352Ratregion
66516D13Mco8190136092898860929179Ratregion
66721D13Mco23165136622671166226876Ratregion
66724D13Mco24400136105580161056408Ratregion
66727D13Mco25110136202545362025557Ratregion
1631857D13Uwm9193137207760172077794Ratregion
1632068D13Got241122137965372579653847Ratregion
1627547D13Sunn1771211136442974164429952Ratregion
1627549D13Sunn1115211136093326360933474Ratregion
1627555D13Sunn1164257136123468361234940Ratregion
1638531D13Got269145138059976780599912Ratregion
1635055D13Wox19173138475723584757410Ratregion
1635235D13Wox23203136584637765846580Ratregion
1635571D13Got238226136632697966327298Ratregion
1635571D13Got238226136632707266327298Ratregion
1635734D13Got252190137766289277663077Ratregion
1636454D13Got234268136266337262663638Ratregion
1636872D13Got266257136957175569572007Ratregion
1637270D13M1Mit110104137990120279901306Ratregion
1637629D13Got23392137575828875758375Ratregion
1637645D13Wox25148137680490776805053Ratregion
7206022Olfr16733138543084585431578Ratregion
7193088AA892455111136825366468253775Ratregion
7193105AW53157297136749733367497430Ratregion
7192475Ptgs2585136216841562169644Ratregion
7191290D13Arb10228136105793161058159Ratregion
7206446Glul999136603346866034467Ratregion
5036087Atp1a2126138473271484732985Ratregion
5036127Crp152138516286385163015Ratregion
5038968RH127436216138483489584835111Ratregion
5036284W53272109138370325783703366Ratregion
5039228RH127586215136491301464913227Ratregion
5039228RH127586215136491301464913229Ratregion
5039038RH127477187138453055284530739Ratregion
5039072RH127496191136382744763827638Ratregion
5036753AU049094130138424181584241946Ratregion
5036897AU049551233136626269266262925Ratregion
5037219AW10749681137330906273309143Ratregion
5035520LAMC2450136529945865299908Ratregion
5033989RH140936180137488650874886688Ratregion
5025996RH130509187138219366182193848Ratregion
5026084RH130849202137630261976302821Ratregion
5026098RH130903191138188584181886032Ratregion
5031498AU048126153137688856376888716Ratregion
5028759RH142220167138193702481937191Ratregion
5028801RH142379167137156126071561427Ratregion
5028885RH142695144138256023782560381Ratregion
5028959RH142977110138254784582547955Ratregion
5029025RH143231114136344457563444689Ratregion
5034438AI511465168136326445263264620Ratregion
5034476BE118958202138378443383784635Ratregion
5026548RH132632202138465860084658802Ratregion
5026746RH133375206137419302874193234Ratregion
5029239RH144043170136247662262476792Ratregion
5034702AA818930216136603458466034799Ratregion
5026832RH133702183138193870181938885Ratregion
5032201AF069985114138376992983770043Ratregion
5032243AI852300119137858035378580472Ratregion
5035060RH71332190136660680966606999Ratregion
5035070D7S2869105138413787484137979Ratregion
5026928RH134073180136769591667696096Ratregion
5027022RH134433187136855402068554207Ratregion
5029629BE101794153136517901865179171Ratregion
5027201AI17322291137658079176580882Ratregion
5027203AW495251123138219928782199410Ratregion
5027205AW125175116138369705683697172Ratregion
5029821BF387596197136584475965844956Ratregion
5029877BE097200156136776644767766603Ratregion
5029889BE097448192138239758782397779Ratregion
5032663RH134836205136468235564682560Ratregion
5032691RH134941181138319182383192004Ratregion
5030059AW531572151136749740867497559Ratregion
5032739RH135123185136819584968196020Ratregion
5032827RH135448201137681178476811985Ratregion
5035224BQ201960174136757789467578068Ratregion
5035268BM391802207137766415177664358Ratregion
5027579AI644422140138483793684838076Ratregion
5030095BE110240185136657551666575701Ratregion
5030301AA87546191136560254265602633Ratregion
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Position Markers

Flank 1: (D13Mit2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21359,874,408 - 59,874,610 (+)MAPPER
Rnor_6.01365,008,245 - 65,008,446NCBI
Rnor_5.01369,987,122 - 69,987,323UniSTS
RGSC_v3.41362,072,299 - 62,072,501RGD
RGSC_v3.41362,072,300 - 62,072,501UniSTS
RGSC_v3.11362,086,380 - 62,086,581RGD
Celera1359,880,598 - 59,880,797UniSTS
RH 3.4 Map13268.6UniSTS
RH 3.4 Map13268.6RGD
RH 2.0 Map13430.8RGD
SHRSP x BN Map1322.6498RGD
FHH x ACI Map1321.56RGD
Cytogenetic Map13 RGD
Peak: (D13Rat32)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21374,862,117 - 74,862,225 (+)MAPPER
Rnor_6.01380,403,559 - 80,403,666NCBI
Rnor_5.01385,295,639 - 85,295,746UniSTS
RGSC_v3.41378,189,125 - 78,189,379RGD
RGSC_v3.41378,189,257 - 78,189,364UniSTS
RGSC_v3.11378,203,445 - 78,203,552RGD
Celera1374,612,920 - 74,613,027UniSTS
RH 3.4 Map13468.2UniSTS
RH 3.4 Map13468.2RGD
RH 2.0 Map13507.8RGD
SHRSP x BN Map1330.5998RGD
FHH x ACI Map1330.36RGD
Flank 2: (D13Rat152)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21385,581,073 - 85,581,182 (+)MAPPER
Rnor_6.01391,629,246 - 91,629,354NCBI
Rnor_5.01396,143,790 - 96,143,898UniSTS
Celera1385,185,751 - 85,185,859UniSTS
SHRSP x BN Map1340.7799RGD
SHRSP x BN Map1340.7799UniSTS
FHH x ACI Map1341.62RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134372077062022792Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)136906051977046890Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
1302791Stl29Serum triglyceride level QTL 293.30.0011blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)138473078886800898Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
2303028Bp329Blood pressure QTL 329arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135849787273485113Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)135949252277046890Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)137486211785581182Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)137402391880753406Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Lnnr5

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross