Dnm3 (dynamin 3) - Rat Genome Database

Name: Dnm3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Dnm3 (dynamin 3) Rattus norvegicus

Analyze

Symbol:

Dnm3

Name:

dynamin 3

RGD ID:

727949

Description:

Enables G protein-coupled glutamate receptor binding activity; GTPase activity; and nitric-oxide synthase binding activity. A structural constituent of postsynapse. Involved in several processes, including filopodium assembly; postsynaptic neurotransmitter receptor internalization; and regulation of plasma membrane bounded cell projection organization. Located in several cellular components, including dendritic spine head; postsynaptic density; and synaptic cleft. Part of apical tubulobulbar complex and basal tubulobulbar complex. Is active in glutamatergic synapse and postsynaptic endocytic zone membrane. Orthologous to human DNM3 (dynamin 3); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; endocytosis pathway; Fc gamma receptor mediated signaling pathway; INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

dynamin, testicular; dynamin-2; dynamin-3; LOC171574; T-dynamin; testicular dynamin

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DNM3 (dynamin 3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Dnm3 (dynamin 3)	HGNC	NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Dnm3 (dynamin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DNM3 (dynamin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DNM3 (dynamin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dnm3 (dynamin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DNM3 (dynamin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DNM3 (dynamin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dnm3 (dynamin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DNM2 (dynamin 2)	HGNC	OrthoDB
Homo sapiens (human):	DNM1 (dynamin 1)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	DNM3 (dynamin 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Dnm3 (dynamin 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	dnm3a (dynamin 3a)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	dyn-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	shi	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	74,359,043 - 74,838,135 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	13	74,359,213 - 74,838,108 (-)	Ensembl
Rnor_6.0	13	79,906,711 - 80,379,967 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	79,910,382 - 80,379,929 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	84,796,219 - 85,272,032 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	77,688,376 - 78,165,178 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	13	77,702,567 - 78,179,370 (-)	NCBI
Celera	13	74,120,681 - 74,589,220 (-)	NCBI		Celera
Cytogenetic Map	13	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

1q24 Deletion Syndrome (ISO)

gastrointestinal stromal tumor (ISO)

Kidney Neoplasms (ISO)

parathyroid carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine (EXP)

3,4-methylenedioxymethamphetamine (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

carbon nanotube (ISO)

clobetasol (ISO)

cocaine (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

entinostat (ISO)

fenamidone (ISO)

gallic acid (ISO)

glyphosate (EXP)

hydrogen sulfide (ISO)

methapyrilene (ISO)

N-ethyl-N-nitrosourea (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel sulfate (ISO)

paraquat (EXP)

PCB138 (EXP)

pentanal (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

progesterone (ISO)

propanal (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endocytosis (IMP)

filopodium assembly (IDA)

negative regulation of dendritic spine morphogenesis (IDA)

positive regulation of filopodium assembly (IDA)

positive regulation of synaptic vesicle recycling (IMP)

postsynapse organization (IEA)

postsynaptic neurotransmitter receptor internalization (IMP)

receptor internalization (IBA)

regulation of dendritic spine morphogenesis (IMP)

sperm ejaculation (NAS)

synapse assembly (IDA)

synaptic vesicle budding from presynaptic endocytic zone membrane (ISO)

synaptic vesicle endocytosis (IBA,ISO)

Cellular Component

apical tubulobulbar complex (IDA)

axon (IDA)

basal tubulobulbar complex (IDA)

cytoplasm (IBA,IDA)

cytoplasmic vesicle (IEA)

cytosol (NAS)

dendritic spine (IDA)

dendritic spine head (IDA)

glutamatergic synapse (IDA,IMP)

Golgi apparatus (IDA)

membrane (IBA)

microtubule (IBA)

perinuclear region of cytoplasm (IDA)

photoreceptor inner segment (ISO)

plasma membrane (IBA,TAS)

postsynaptic density (IDA)

postsynaptic endocytic zone membrane (IDA,IMP)

presynapse (ISO)

synapse (IBA,IDA)

synaptic cleft (IDA)

Molecular Function

GTP binding (IEA)

GTPase activity (IBA,IMP,TAS)

identical protein binding (ISO)

microtubule binding (IBA)

nitric-oxide synthase binding (IDA)

protein binding (IPI,ISO)

structural constituent of postsynapse (IDA,IMP)

type 1 metabotropic glutamate receptor binding (IPI)

type 5 metabotropic glutamate receptor binding (IPI)

Molecular Pathway Annotations Click to see Annotation Detail View

clathrin-dependent synaptic vesicle endocytosis (ISO)

endocytosis pathway (IEA)

Fc gamma receptor mediated signaling pathway (IEA)

References

References - curated


1.	Cao H, etal., Mol Biol Cell. 1998 Sep;9(9):2595-609.
2.	Cook T, etal., J Neurochem 1996 Sep;67(3):927-31.
3.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Gray NW, etal., Curr Biol. 2003 Mar 18;13(6):510-5.
5.	Gray NW, etal., J Cell Sci. 2005 Mar 15;118(Pt 6):1279-90. Epub 2005 Mar 1.
6.	Hyndman KA, etal., Am J Physiol Renal Physiol. 2011 Apr 13.
7.	Ikeuchi Y, etal., Cell Rep. 2013 Sep 12;4(5):879-89. doi: 10.1016/j.celrep.2013.07.042. Epub 2013 Aug 29.
8.	Lu J, etal., Neuron. 2007 Sep 20;55(6):874-89.
9.	Meckler X, etal., Eur J Neurosci. 2006 Nov;24(9):2439-43.
10.	Nakata T, etal., J Cell Sci 1993 May;105 ( Pt 1):1-5.
11.	NCBI rat LocusLink and RefSeq merged data October 15, 2003
12.	Pipeline to import KEGG annotations from KEGG into RGD
13.	RGD automated data pipeline
14.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15.	RGD automated import pipeline for gene-chemical interactions
16.	Saheki Y and De Camilli P, Cold Spring Harb Perspect Biol. 2012 Sep 1;4(9):a005645. doi: 10.1101/cshperspect.a005645.
17.	Tanifuji S, etal., J Biol Chem. 2013 Jun 28;288(26):19050-9. doi: 10.1074/jbc.M112.445874. Epub 2013 May 16.
18.	Vaid KS, etal., J Cell Physiol. 2007 Mar;210(3):644-54.
19.	Zanner R, etal., J Cell Sci. 2004 May 1;117(Pt 11):2369-76.

Additional References at PubMed

PMID:10908605	PMID:12850060	PMID:14651853	PMID:14760703	PMID:16903783	PMID:19032944	PMID:21689597	PMID:21700703	PMID:23410488	PMID:23533145	PMID:23746204	PMID:26302298
PMID:32357304

Genomics

Comparative Map Data

Dnm3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	74,359,043 - 74,838,135 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	13	74,359,213 - 74,838,108 (-)	Ensembl
Rnor_6.0	13	79,906,711 - 80,379,967 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	79,910,382 - 80,379,929 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	84,796,219 - 85,272,032 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	77,688,376 - 78,165,178 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	13	77,702,567 - 78,179,370 (-)	NCBI
Celera	13	74,120,681 - 74,589,220 (-)	NCBI		Celera
Cytogenetic Map	13	q22	NCBI

DNM3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	171,817,887 - 172,418,466 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	171,841,495 - 172,418,466 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	171,810,638 - 172,387,606 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	170,077,261 - 170,648,480 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	168,542,294 - 169,113,513	NCBI
Celera	1	144,920,019 - 145,491,322 (+)	NCBI
Cytogenetic Map	1	q24.3	NCBI
HuRef	1	143,034,379 - 143,605,830 (+)	NCBI		HuRef
CHM1_1	1	173,232,859 - 173,803,974 (+)	NCBI		CHM1_1

Dnm3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	161,810,022 - 162,305,890 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	1	161,810,022 - 162,305,603 (-)	Ensembl
GRCm38	1	161,982,450 - 162,478,321 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	161,982,453 - 162,478,034 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	163,917,433 - 164,408,165 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	1	163,823,979 - 164,314,705 (-)	NCBI			mm8
Celera	1	164,442,411 - 164,918,051 (-)	NCBI		Celera
Cytogenetic Map	1	H2.1	NCBI

Dnm3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	12,345,693 - 12,881,269 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	12,345,483 - 12,881,182 (+)	NCBI	ChiLan1.0	ChiLan1.0

DNM3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	151,049,215 - 151,626,289 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	151,049,346 - 151,615,808 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	147,339,773 - 147,916,513 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

DNM3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	26,569,708 - 27,024,939 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	26,574,453 - 27,024,759 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	26,095,554 - 26,643,105 (-)	NCBI
ROS_Cfam_1.0	7	26,315,840 - 26,863,371 (-)	NCBI
ROS_Cfam_1.0 Ensembl	7	26,315,837 - 26,863,372 (-)	Ensembl
UMICH_Zoey_3.1	7	26,226,439 - 26,773,966 (-)	NCBI
UNSW_CanFamBas_1.0	7	26,297,008 - 26,844,657 (-)	NCBI
UU_Cfam_GSD_1.0	7	26,447,294 - 26,995,113 (-)	NCBI

Dnm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	97,125,192 - 97,564,504 (-)	NCBI
SpeTri2.0	NW_004936481	14,971,977 - 15,411,253 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNM3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	114,262,782 - 114,805,242 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	114,262,782 - 114,805,252 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	126,088,358 - 126,400,571 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DNM3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	56,735,877 - 57,285,557 (-)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1	25	56,735,877 - 57,285,557 (-)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	25	56,746,215 - 57,285,498 (-)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666055	58,341,839 - 58,908,030 (-)	NCBI	Vero_WHO_p1.0

Dnm3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624771	9,247,463 - 9,838,276 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D13Mit5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	74,741,916 - 74,742,160 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	80,285,619 - 80,285,862	NCBI	Rnor6.0
Rnor_5.0	13	85,176,659 - 85,176,902	UniSTS	Rnor5.0
RGSC_v3.4	13	78,070,513 - 78,070,756	UniSTS	RGSC3.4
RGSC_v3.4	13	78,070,512 - 78,070,756	RGD	RGSC3.4
RGSC_v3.1	13	78,084,701 - 78,084,944	RGD
Celera	13	74,492,227 - 74,492,470	UniSTS
RH 3.4 Map	13	460.4	UniSTS
RH 3.4 Map	13	460.4	RGD
RH 2.0 Map	13	528.0	RGD
SHRSP x BN Map	13	29.4998	RGD
FHH x ACI Map	13	30.36	RGD
Cytogenetic Map	13	q22	UniSTS

D13Mit3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	74,741,854 - 74,742,070 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	80,285,557 - 80,285,772	NCBI	Rnor6.0
Rnor_5.0	13	85,176,597 - 85,176,812	UniSTS	Rnor5.0
RGSC_v3.4	13	78,070,450 - 78,070,666	RGD	RGSC3.4
RGSC_v3.4	13	78,070,451 - 78,070,666	UniSTS	RGSC3.4
RGSC_v3.1	13	78,084,630 - 78,084,951	RGD
Celera	13	74,492,165 - 74,492,380	UniSTS
RH 3.4 Map	13	455.5	UniSTS
RH 3.4 Map	13	455.5	RGD
RH 2.0 Map	13	520.3	RGD
Cytogenetic Map	13	q22	UniSTS

BE116196

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	74,583,374 - 74,583,535 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	80,125,908 - 80,126,068	NCBI	Rnor6.0
Rnor_5.0	13	85,019,818 - 85,019,978	UniSTS	Rnor5.0
RGSC_v3.4	13	77,911,188 - 77,911,348	UniSTS	RGSC3.4
Celera	13	74,335,013 - 74,335,173	UniSTS
RH 3.4 Map	13	452.7	UniSTS
Cytogenetic Map	13	q22	UniSTS

AW534587

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	74,586,257 - 74,586,455 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	80,128,791 - 80,128,988	NCBI	Rnor6.0
Rnor_5.0	13	85,022,701 - 85,022,898	UniSTS	Rnor5.0
RGSC_v3.4	13	77,914,071 - 77,914,268	UniSTS	RGSC3.4
Celera	13	74,337,896 - 74,338,093	UniSTS
RH 3.4 Map	13	452.8	UniSTS
Cytogenetic Map	13	q22	UniSTS

AA800783

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	74,379,993 - 74,380,135 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	79,923,151 - 79,923,292	NCBI	Rnor6.0
Rnor_5.0	13	84,817,022 - 84,817,163	UniSTS	Rnor5.0
RGSC_v3.4	13	77,700,644 - 77,700,785	UniSTS	RGSC3.4
Celera	13	74,132,732 - 74,132,873	UniSTS
RH 3.4 Map	13	470.3	UniSTS
Cytogenetic Map	13	q22	UniSTS

BQ200675

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	74,398,937 - 74,399,133 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	79,942,093 - 79,942,288	NCBI	Rnor6.0
Rnor_5.0	13	84,835,963 - 84,836,158	UniSTS	Rnor5.0
RGSC_v3.4	13	77,719,587 - 77,719,782	UniSTS	RGSC3.4
Celera	13	74,151,687 - 74,151,882	UniSTS
RH 3.4 Map	13	470.2	UniSTS
Cytogenetic Map	13	q22	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	31241331	93395974	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	32284471	77284471	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34535218	79535218	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	37262092	82262092	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	37415584	80753406	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	37415584	82415584	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	38433408	83433408	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39754544	84754544	Rat
12879444	Bp397	Blood pressure QTL 397			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45049404	90049404	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45514719	90514719	Rat
12879441	Bp396	Blood pressure QTL 396			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45699983	90699983	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	46088046	91088046	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	46197976	84753113	Rat
1641901	Alcrsp6	Alcohol response QTL 6			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	13	52362171	97362171	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	56056920	101056920	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	59492522	77046890	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	59874408	85581182	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	61825626	106807694	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	65103704	106807694	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	65103704	106807694	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	69060519	77046890	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	69060519	86800898	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	69060519	86800898	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	69060519	86800898	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	74023918	80753406	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	74023918	97213863	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	848
Count of miRNA genes:	172
Interacting mature miRNAs:	202
Transcripts:	ENSRNOT00000041058, ENSRNOT00000047799, ENSRNOT00000064219, ENSRNOT00000067653, ENSRNOT00000068490
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			7						62	1	7	11
Low	3	39	17	8	19	8	8	9	12	34	34		8
Below cutoff		4	29	29		29		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_138538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC144674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF201839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D14076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000067653 ⟹ ENSRNOP00000063767

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	74,367,731 - 74,838,108 (-)	Ensembl
Rnor_6.0 Ensembl	13	79,910,382 - 80,379,929 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000075938 ⟹ ENSRNOP00000068044

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	74,379,880 - 74,838,108 (-)	Ensembl
Rnor_6.0 Ensembl	13	79,923,000 - 80,379,929 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098479 ⟹ ENSRNOP00000085302

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	74,384,473 - 74,838,108 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102382 ⟹ ENSRNOP00000084111

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	74,359,213 - 74,838,108 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104847 ⟹ ENSRNOP00000088404

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	74,384,000 - 74,838,108 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106497 ⟹ ENSRNOP00000088872

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	74,379,843 - 74,572,337 (-)	Ensembl

RefSeq Acc Id:

NM_138538 ⟹ NP_612547

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	74,367,726 - 74,838,104 (-)	NCBI
Rnor_6.0	13	79,910,883 - 80,379,925 (-)	NCBI
Rnor_5.0	13	84,796,219 - 85,272,032 (-)	NCBI
RGSC_v3.4	13	77,688,376 - 78,165,178 (-)	RGD
Celera	13	74,120,681 - 74,589,220 (-)	RGD

Sequence:

show sequence

GACACGGTGCCGGGACTCAGCGGTGTGAGCCCCGCGCATAATAAACCGGACAAGTGCTGCGAGG
CCCGGGCTGCCTGCCAGGTCGCTGAGTCGCGCAGGGACCTGTGGGGCAGTTGGCCGCACAGGCA
AGATGGGGAACCGGGAGATGGAAGAACTGATCCCTCTGGTGAACCGTCTGCAGGACGCTTTCTC
GGCTCTGGGACAGAGCTGTCTGCTGGAGCTGCCACAGATCGCCGTGGTGGGCGGCCAGAGCGCC
GGCAAGAGCTCAGTGCTCGAGAACTTCGTGGGCAGGGACTTTCTTCCTCGAGGCTCGGGCATTG
TGACCAGACGACCTCTTGTACTCCAGCTTGTCACCTCTAAAGCAGAATATGCCGAGTTTCTACA
TTGCAAAGGAAAAAAATTTACAGATTTTGATGAAGTTCGCCACGAGATCGAAGCAGAAACGGAC
CGAGTAACAGGAATGAATAAAGGCATCTCCTCTGTACCCATTAACCTGCGAGTCTACTCTCCCC
ACGTGTTAAACCTAACGCTAATCGACCTACCTGGAATAACGAAAGTGCCCGTGGGAGACCAGCC
GCCAGATATTGAGTATCAGATCAGAGATATGATTATGCAGTTCATCACCAGGGAGAACTGTCTG
ATTTTGGCTGTCACACCAGCCAACACCGATCTTGCGAACTCAGATGCCCTGAAGCTAGCCAAAG
AAGTCGATCCTCAAGGCCTGAGGACCATTGGCGTTATCACCAAGCTGGATCTCATGGATGAAGG
GACGGATGCCAGGGATGTACTAGAGAACAAGCTGCTACCTCTCCGCAGGGGCTATGTGGGGGTG
GTCAACCGAAGCCAGAAGGACATAGATGGAAAGAAGGACATTAAGGCAGCTATGCTGGCAGAAA
GGAAATTTTTTCTCTCTCATCCAGCATATAGACACATTGCTGATCGGATGGGGACCCCACACCT
CCAGAAGGTCCTGAATCAGCAACTTACCAACCATATCCGAGATACCCTGCCCAACTTCAGGAAC
AAGCTACAGGGGCAGCTGCTCTCCATAGAACATGAAGTAGAAGCCTTCAAAAACTTCAAACCGG
AAGACCCCACAAGGAAGACCAAAGCACTGCTACAGATGGTCCAACAGTTCGCTGTGGACTTTGA
GAAGAGAATCGAAGGGTCGGGGGATCAAGTAGACACGTTAGAGCTCTCTGGCGGTGCTAAGATC
AATCGCATTTTCCACGAGCGCTTTCCTTTTGAGATAGTGAAGATGGAGTTCAATGAGAAAGAAC
TGAGAAGAGAAATAAGCTATGCAATCAAAAACATACACGGGATCAGGACAGGGTTGTTTACTCC
AGACATGGCGTTTGAGGCAATAGTCAAAAAACAGATAGTAAAACTGAAAGGGCCTTCTTTGAAG
AGTGTGGACCTGGTGATGCAGGAACTGATCAACACGGTGAAGAAGTGCACCAAGAGGCTGGCCA
ACTTCCCCAGACTTTGTGAAGAAACAGAAAGGATTGTTGCTAACCACATCCGTGAGCGAGAAGG
AAAGACCAAGGACCAGGTCCTGCTACTGATTGACATTCAAGTCTCTTACATTAACACCAACCAT
GAGGACTTCATCGGCTTTGCAAATGCTCAGCAGAGAAGCAGTCAGGTTCACAAGAAAAGCACAA
TTGGAAATCAGGGAACCAATCTTCCGCCTTCAAGGCAAATTGTGATTCGGAAGGGCTGGCTGAC
CGTCAGCAACATTGGCATCATGAAAGGAGGCTCGAAGGGCTACTGGTTTGTCCTCACGGCAGAA
AGCTTGTCCTGGTATAAAGACGATGAGGAGAAAGAAAAGAAGTATATGCTTCCACTGGACAACC
TGAAAGTCCGGGACGTGGAGAAAGGCTTCATGTCCAGCAAGCACGTCTTCGCACTCTTCAACAC
AGAACAAAGGAATGTCTACAAAGACTATCGTTCCCTGGAGCTGGCCTGTGATTCCCAGGAGGAT
GTGGACAGCTGGAAGGCGTCTCTGCTCAGAGCTGGCGTCTATCCAGACAAGTCTTTTACTGAAA
ATGATGAAAATGGACAAGCAGAAAACTTCTCCATGGACCCGCAGTTGGAGAGGCAAGTGGAGAC
TATTCGCAACCTCGTAGACTCCTACATGTCGATAATCAACAAATGCATCCGAGACCTAATTCCA
AAAACAATAATGCACCTTATGATCAATAATGTTAAAGACTTCATCAACTCTGAACTCCTAGCAC
AGCTCTACTCCTCTGAGGACCAGAACACACTAATGGAAGAATCCGTGGAGCAGGCTCAGCGCCG
GGATGAGATGCTCCGGATGTACCAAGCCCTGAAAGAAGCCCTCGCGATCATTGGCGACATCAAC
ACGGTCACTGTGTCCACCCCAGCCCCACCTCCAGTAGATGACTCCTGGCTCCAGCATTCCAGAA
GGTCACCTCCTCCAAGCCCCACCACCCAAAGAAGGCTGACTCTAAGTGCTCCCCTCCCGAGGCC
CGCATCTAGCCGTGGACCAGCTCCTGCCATTCCCTCTCCAGGCCCCCACTCTGGGGCTCCCCCA
GTCCCATTCCGTCCAGGCCCATTACCTCCTTTTCCCAACAGCAGTGACTCCTACGGAGCCCCTC
CACAGGTTCCATCCAGGCCCACAAGGGCACCCCCCAGTGTTCCAAGCCGGAGGCCACCCCCATC
ACCAACTCGCCCCACTATAATCCGTCCACTAGAGTCCTCACTGTTAGACTAAATGAAGTGTCCG
GCATGGCAATTAAATCACTAATGATTCATGCAAAAGCAGCATTCGGTTACCTTTGCAGCCAACC
ATGAGTAGTCGCATGTATGGACCTCCATAGGCAAGTAGCCAGTCCTACTAACATGTTCATCGCT
CATCTTCATTGCTCATGGTGGGTTAGACCTTAGGGTTTGACTCTGAAAACCTGCTCACCTGTAG
AGAGGCTTAATATGTTGTATTGACCGAGGTAGTTTTATAGAACAGTCCTATACTTTGGTACCAC
TTACCTGTCCAACAGATAGCAGAAATTGCTTTGGAAGAGTTTCTAGGCTGTCTACAGAGGAGCT
TACGAGGCTTCCGAACAGACAAGAGTGTGAGCTTGGAACCACACCGACTTCTCCCACATTCTGT
TTTGGGTGGCAGAAACTCTGCTGTCTGATATTAATGCCACCACTCAGTTCGCAGTTGCTTATTT
AGGCTTCTTTCCCTCCTTATTTCATAAGACTGCTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250141 ⟹ XP_006250203

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	74,363,532 - 74,838,134 (-)	NCBI
Rnor_6.0	13	79,906,711 - 80,379,966 (-)	NCBI
Rnor_5.0	13	84,796,219 - 85,272,032 (-)	NCBI

Sequence:

show sequence

GAGCTGTCAGGAGCCTAGCAGCGGGTGGCAGGGATCGGACGACGGTGCCGGGACTCAGCGGTGT
GAGCCCCGCGCATCAACAAACCGGACAAGTGCTGCGAGGCCCGGGCTGCCTGCCAGGTCGCTGA
GTCGCGCAGGGACCTGTGGGGCAGTTGGCCGCACAGGCAAGATGGGGAACCGGGAGATGGAAGA
ACTGATCCCTCTGGTGAACCGTCTGCAGGACGCTTTCTCGGCTCTGGGACAGAGCTGTCTGCTG
GAGCTGCCACAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCAGTGCTCGAGAACT
TCGTGGGCAGGGACTTTCTTCCTCGAGGCTCGGGCATTGTGACCAGACGACCTCTTGTACTCCA
GCTTGTCACCTCTAAAGCAGAATATGCCGAGTTTCTACATTGCAAAGGAAAAAAATTTACAGAT
TTTGATGAAGTTCGCCACGAGATCGAAGCAGAAACGGACCGAGTAACAGGAATGAATAAAGGCA
TCTCCTCTGTACCCATTAACCTTCGAGTCTACTCTCCCCACGTGTTAAACCTAACGCTAATCGA
CCTACCTGGAATAACGAAAGTGCCCGTGGGAGACCAGCCGCCAGATATTGAGTATCAGATCAGA
GATATGATTATGCAGTTCATCACCAGGGAGAACTGTCTGATTTTGGCTGTCACACCAGCCAACA
CCGATCTTGCGAACTCAGATGCCCTGAAGCTAGCCAAAGAAGTCGATCCTCAAGGCCTGAGGAC
CATTGGCGTTATCACCAAGCTGGATCTCATGGATGAAGGGACGGATGCCAGGGATGTACTAGAG
AACAAGCTGCTACCTCTCCGCAGGGGCTATGTGGGGGTGGTCAACCGAAGCCAGAAGGACATAG
ATGGAAAGAAGGACATTAAGGCAGCTATGCTGGCAGAAAGGAAATTTTTTCTCTCTCATCCAGC
ATATAGACACATTGCTGATCGGATGGGGACCCCACACCTCCAGAAGGTCCTGAATCAGCAACTT
ACCAACCATATCCGAGATACCCTGCCCAACTTCAGGAACAAGCTACAGGGGCAGCTGCTCTCCA
TAGAACATGAAGTAGAAGCCTTCAAAAACTTCAAACCGGAAGACCCCACAAGGAAGACCAAAGC
ACTGCTACAGATGGTCCAACAGTTCGCTGTGGACTTTGAGAAGAGAATCGAAGGGTCGGGGGAT
CAAGTAGACACGTTAGAGCTCTCTGGCGGTGCTAAGATCAATCGCATTTTCCACGAACGCTTTC
CTTTTGAGATAGTGAAGATGGAGTTCAATGAGAAAGAACTGAGAAGAGAAATAAGCTATGCAAT
CAAAAACATACACGGGATCAGGACAGGGTTGTTTACTCCAGACATGGCGTTTGAGGCAATAGTC
AAAAAACAGATAGTAAAACTGAAAGGGCCTTCTTTGAAGAGTGTGGACCTGGTGATGCAGGAAC
TGATCAACACGGTGAAGAAGTGCACCAAGAGGCTGGCCAACTTCCCCAGACTTTGTGAAGAAAC
AGAAAGGATTGTTGCTAACCACATCCGTGAGCGAGAAGGAAAGACCAAGGACCAGGTCCTGCTA
CTGATTGACATTCAAGTCTCTTACATTAACACCAACCATGAGGACTTCATCGGCTTTGCAAATG
CTCAGCAGAGAAGCAGTCAGGTTCACAAGAAAAGCACAATTGGAAATCAGGTGATTCGGAAGGG
CTGGCTGACCGTCAGCAACATTGGCATCATGAAAGGAGGCTCGAAGGGCTACTGGTTTGTCCTC
ACGGCAGAAAGCTTGTCCTGGTATAAAGACGATGAGGAGAAAGAAAAGAAGTATATGCTTCCAC
TGGACAACCTGAAAGTCCGGGACGTGGAGAAAGGCTTCATGTCCAGCAAGCACGTCTTCGCACT
CTTCAACACAGAACAAAGGAATGTCTACAAAGACTATCGTTCCCTGGAGCTGGCCTGTGATTCC
CAGGAGGATGTGGACAGCTGGAAGGCGTCTCTGCTCAGAGCTGGCGTCTATCCAGACAAGTCTT
TTACTGAAAATGATGAAAATGGACAAGCAGAAAACTTCTCCATGGACCCGCAGTTGGAGAGGCA
AGTGGAGACTATTCGCAACCTCGTAGACTCCTACATGTCGATAATCAACAAATGCATCCGAGAC
CTAATTCCAAAAACAATAATGCACCTTATGATCAATAATGTTAAAGACTTCATCAACTCTGAAC
TCCTAGCACAGCTCTACTCCTCTGAGGACCAGAACACACTAATGGAAGAATCCGTGGAGCAGGC
TCAGCGCCGGGATGAGATGCTCCGGATGTACCAAGCCCTGAAAGAAGCCCTCGCGATCATTGGC
GACATCAACACGGTCACTGTGTCCACCCCAGCCCCACCTCCAGTAGATGACTCCTGGCTCCAGC
ATTCCAGAAGGTCACCTCCTCCAAGCCCCACCACCCAAAGAAGGCTGACTCTAAGTGCTCCCCT
CCCGAGGCCCGCATCTAGCCGTGGACCAGCTCCTGCCATTCCCTCTCCAGGCCCCCACTCTGGG
GCTCCCCCAGTCCCATTCCGTCCAGGCCCATTACCTCCTTTTCCCAACAGCAGTGACTCCTACG
GAGCCCCTCCACAGGTTCCATCCAGGCCCACAAGGGCACCCCCCAGTGTTCCAAGCCGGAGGCC
ACCCCCATCACCAACTCGCCCCACTATAATCCGTCCACTAGAGTCCTCACTGTTAGACTAAACG
AAGTGTCCGGCATGGCAATTAAATCACTAATGATTCATGCAAAAGCAGCATTCGGTTACCTTTG
CAGCCAACCATGAGTAGTCGCATGTATGGACCTCCATAGGCAAGTAGCCAGTCCTACTAACATG
TTCATCGCTCATCTTCATTGCTCATGGTGGGTTAGACCTTAGGGTTTGACTCTGAAAACCTGCT
CACCTGTAGAGAGGCTTAATATGTTGTATTGACCGAGGTAGTTTTATAGAACAGTCCTATACTT
TGGTACCACTTACCTGTCCAACAGATAGCAGAAATTGCTTTGGAAGAGTTTTCTAGGCTGTCTA
CAGAGGAGCTTACGAGGCTTCCGAACAGACACAAGAGTGTGAGCTTGGAACCACACCGACTTCT
CCCACATTCTGTTTTGGGTGGCAGAAACTCTGCTGTCTGATATTAATGCCACCACTCAGTCCGC
AGTTGCTTATTTAGGCTTCTTTCCCTCCTTATTTCATAAGACTGCTAAAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATGGCAAGGTTTTTAAATCAGGATTGCTTA
AATCGGGAGCCTTTCAGGAGCACGAGGCAGGCTGTAAAGGGAGCGTCTCCAGGGTTTGCTCCGG
GGAGCGTCTCCTGTGCATTTTGCTTCATGCTAGAAGCACAAGCAACATCAAGGCAAAGCTCGAG
GGATTTTTGGTGATCGGTGGATAGGTTTGCCTACTTTTAGAGTTCAAAGAAGCAAAAGTAAATT
GCCATTTCTAACAGTGTCTGGGGAAATATAATTTATTATCTTATTATTTACCTCTTTGTGGGCT
ATGATGAAGGAAGGTTGGCATTTCCAGTTGATTGGGGGAGGGGCATGGGTAACTAATTCCACTT
AGTTATTATGATTATTATTTTGGCTGGAGAAAAGTTAAGTGTATGCTAGCACATGATTTCTATG
GTTTACATATAAATGACCATAGAAGAATCCGTTTCAAAGTACTTTAATGTCTCTACCCATTCCA
GACTCTCTTAAATCTTGCAGCTTACCGTGGCACCATTGCGTGGAGAGTGTGGCCCCTGGTACGG
GAAGGCAATTCATCAGAGATGCCATGGTTTAGGAGCACAGCTCCTGGGTTTACAGACGCCTTGC
CACGGCTTGCTCCCGAAAAGCAGCCACACTGAGCTGCAGAAAAAGTTTGCAATTTCTAAGATCT
CTGAACTTCACGAGTGCAGCCTAGCCTACAGGTCATTAGTTCAGTCTTGAGGCTAAGTTTTGAA
CTACCTATGACCAGATGGTTAACAGAGCAAACAGCTAGAGGCCAAAAGGAATTCTGTCTGCTAA
CTGCACCCAGACTGCAGAGTGGGCTGTCACTGAATTGCAGCATCCCGAGACAGTATTCCATAAT
CAAAAATCAAATCAGGTCTTACTAACTACAGCATCTCCCAATGACGGCGGTCAACATGATTTGT
ATGTGACCTTCACTTTAATTTCCTGTGCAGTTTCTACCCAAAGCAAGGGGCTATAAAAAGTGTG
ATGTAAAGACGTTTAGCCATTATTTGAAAAAGTCTTCTTTTTTCTAAGTGAAAAATGTCACTGC
ATTGAATTTATTCTAATGGGTTAGATCCCACTTATAATTGGCAAAAGTTGGAGAACATGAGACG
TACAAAGGGGTGGTTTTCAACCTTTAAGTTACACAGAATTACCAATGCTCTAGGTTCTCTATAA
TTTTTCCCTGTTGAAAAAAAAAGTATTTGTGAATGGTACTCATGTAAGACATGCACATTGTCTT
TGAAAGGTATCCCAGCTAAATGGGAAAACGTTAGGCAAGCATTTATAATTGAACAACTCATAGA
CAATGAGGCTCTCCACAAAACCCTTCCTTTCAGCACTCCCTTTTGGCTTCTTCCTATGAGTTCT
CTAAAACAGGCAGCTAATGAACTAGATACTTCAGGGCTTGGCTTCGTTCTTCCTGTGGTTTTGC
ATCTTGCTATATTTCAAATTTTTCGTTCGTTGGAGGAAACTATTGCAGAAAACCACTGGTGTGT
TCTCAAATCAGCACAGGCCAATGTCAAGGAAAACTGGGGATTTGTCTCTCCAAACTTCTTCCCA
CTGATCCTAGACGGTAAACGATGGCGCTTGTCATCTTTAGCTTTTGCTTCTTGGTCCACAGATT
CCCTGTCCCAAATGTGTCCCTTTGTCAGGACAGTTTCGTCCTGCTGGCTACCGTGTTACATCTG
GTGGAAGCCAGAATCCCCTACTCTACCACCCCCCTCCCCAGAAGGCCAACCCTGGCACCTCAGA
ATAATTTCAGACGGCTGCGATTCAAAGGGTCTGCACTCTGCTAACAGGAAGCACCAACATGAGC
GAAGCCTGAAGTTTCACTGGAGTGTGCACCGTGCACATCAGGCCTGGTGATGGGAATGGAAGCT
CCAAGGGCCTCCTGCTTCCCACTCCGTTTCTGATCTCTCAGTCAGCCCTCCTGGTTGATGACCC
CAGTGTTGTCAGCACAACAGGTGTAGCTTTATCTTGTCTAGCATAATTAATAACTTTAAAAAGT
GCTTTCGGGATGTGAAAAGGTAACTGTACGTGTTTGATAAGCCAATGTTCCTGTCTCGTGCTAA
ACTCTGCATGCAGACTGGTTAACCGGAATAACCAGCCATCAGTGGACGGACCATGAAACAGTAT
TTAGAACAGATGTATTTCCAAAAAGCATCTACCAAGAATACCTTCTTGAATATTTGCCTTTAGT
GTGTCTTATTACACAGAAGAGCAGTGGGGTCTACTTATTGGCAATTTCTCTGTTTGTGCAGATA
CATACTCATTCTATCCAAAAGCGTAACGAACAGTTCCTGTGACGTCAGCATTCTAGATTTAGAG
TTAAGGAGTAGCCACATAGATTCGTTCGTGATTTCTTTAGACTGTAGCCATACTCTAAGCTATG
AAGTGGGACCTGACACCCGTATGTGACAAGTGTTTGCTGTCCAACTCGTTTTCTCTGCATGTCC
CTAAGAATACACTACATATACAGTGACCACGTGTTTCGTGTCCTTTTAAGTAAGTAGGTTCAAA
AGCACTTACTAAAATGCCATTAAGCATGATTGTGATTTTATGTACATCATATATATATGAATAT
AAATATCAGTGTAAACCTGTGCTCAGTATGTAAGAGTATGAATATATTTTTAACTGTGCTAATA
TGTATGTTGGGAAGACTTGCCATAACATGATTACGGTAGTTCATTTCTCATGACCTCCGTGAGA
AACAGAAGCTCTCCTAACTCATACTGTATATATTCTGAGGGGCACAAAGCTTACGATAACCCTG
ATGATCACCATACTTATAGCCATGACAAGGCAATGTCTACGGTCCTTTGTATTGAAACCCACAG
CACTGCTGCCTAAGAAGGCATTACTTTTGGGGTGATACTTTGATAAAAAAAAGTATAAGATTTG
GGAGCTTTTCTCCAGGGTCTCTAGTTAGAATGGTGTTATTTGGGAATTGTTGAGCTGACGCTTT
AAAAAAAAAAAAAAAGGTTAAATGAGATCTCTTTAGTAAAGGTTAAAAGAATACAGAGTCAGCA
AAACTATTAAAGCATGAGGGGGACAGGATACTCAATTCCTTGCAGGTATCTACTCTGTCAGGTA
AACCTTGTACATTTGGAAAACAGTACAATTACATCGATGGGACTCTCTGTAGGATGAGTGGCAA
AACCTAAACAGACCTCCTAACTGTCTTAATCCAGCAAGAGGTGACTGCATGTAAGACAGAAGCA
TGAGCGCTATCACTTCACCTCGCACTAACCTGTGGACTAGAGTTCCTGTGAGTGAAGCCAATTT
TAGAGAAATAACGGATAGTTCGCCAGATCCTTTAGTCTTTTCTAAAGAACTCAGCTTGTCTCCT
AGATAACAATAGGTCGTCTGTCTAGCTGATGTGTTTAAAATTACGTGGTGCTCTGTGTGTGAAA
TTTTAACAATATTTTTGAAGCATATATAGTATATGCATCGCTAGTTGTGTATATATGCATACAT
GTAATAATATCTGTATGTGTGGAGAGCAAGAGACAGGAACCTCAGAGAACCTCCTGTTTAAGGC
CTGTCAGCACTGGTACACTGGTGAGACTCCTCTTTCCACTGCTCAAGGACTACATGTGGCTCAA
CTCAAGGCATTCATTTCCTTATAACTTTTACCTTTAAGTCCCTTAAACTTTAACTCATAATGTT
TTCGATTTATACAAAAACCACTCCCGTCTTGTACTGACCGCTGCCAATCTGTGAAAACACCTCA
CAAACCAGAAACCCTACCACCATAGCCCTGTGTGTTTGATTTCATATACGCACTGCTTTTGTTC
CATGGGCTTGTACGTGTTCCTCCTCTCTCCCCGTTCTGAGTCAAACTTCATTTCGCTTTCGTGT
GAATGACTGAGTACATAGAAGTCAAACCTTGTTTTCTCCGTTGATTCTTTAACATGAACCAGAA
TACTTCCCACTGTCGTTTTTACCACTTTGGGGATTTCTTAATGCTGGATTAATATGGATTCTGT
GAATGGGATTTTTTTGAAGCAAATTCCTAAAAGCCTGTATCATCCTTGAAGGTCATGTACCTAT
TGTGAAAAAAAAAATGTGAAACTGTATTTCTGAACCTGAAATAAATGATTACATTTGAAGGAA

hide sequence

RefSeq Acc Id:

XM_006250142 ⟹ XP_006250204

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	74,379,843 - 74,838,134 (-)	NCBI
Rnor_6.0	13	79,923,000 - 80,379,966 (-)	NCBI
Rnor_5.0	13	84,796,219 - 85,272,032 (-)	NCBI

Sequence:

show sequence

GAGCTGTCAGGAGCCTAGCAGCGGGTGGCAGGGATCGGACGACGGTGCCGGGACTCAGCGGTGT
GAGCCCCGCGCATCAACAAACCGGACAAGTGCTGCGAGGCCCGGGCTGCCTGCCAGGTCGCTGA
GTCGCGCAGGGACCTGTGGGGCAGTTGGCCGCACAGGCAAGATGGGGAACCGGGAGATGGAAGA
ACTGATCCCTCTGGTGAACCGTCTGCAGGACGCTTTCTCGGCTCTGGGACAGAGCTGTCTGCTG
GAGCTGCCACAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCAGTGCTCGAGAACT
TCGTGGGCAGGGACTTTCTTCCTCGAGGCTCGGGCATTGTGACCAGACGACCTCTTGTACTCCA
GCTTGTCACCTCTAAAGCAGAATATGCCGAGTTTCTACATTGCAAAGGAAAAAAATTTACAGAT
TTTGATGAAGTTCGCCACGAGATCGAAGCAGAAACGGACCGAGTAACAGGAATGAATAAAGGCA
TCTCCTCTGTACCCATTAACCTTCGAGTCTACTCTCCCCACGTGTTAAACCTAACGCTAATCGA
CCTACCTGGAATAACGAAAGTGCCCGTGGGAGACCAGCCGCCAGATATTGAGTATCAGATCAGA
GATATGATTATGCAGTTCATCACCAGGGAGAACTGTCTGATTTTGGCTGTCACACCAGCCAACA
CCGATCTTGCGAACTCAGATGCCCTGAAGCTAGCCAAAGAAGTCGATCCTCAAGGCCTGAGGAC
CATTGGCGTTATCACCAAGCTGGATCTCATGGATGAAGGGACGGATGCCAGGGATGTACTAGAG
AACAAGCTGCTACCTCTCCGCAGGGGCTATGTGGGGGTGGTCAACCGAAGCCAGAAGGACATAG
ATGGAAAGAAGGACATTAAGGCAGCTATGCTGGCAGAAAGGAAATTTTTTCTCTCTCATCCAGC
ATATAGACACATTGCTGATCGGATGGGGACCCCACACCTCCAGAAGGTCCTGAATCAGCAACTT
ACCAACCATATCCGAGATACCCTGCCCAACTTCAGGAACAAGCTACAGGGGCAGCTGCTCTCCA
TAGAACATGAAGTAGAAGCCTTCAAAAACTTCAAACCGGAAGACCCCACAAGGAAGACCAAAGC
ACTGCTACAGATGGTCCAACAGTTCGCTGTGGACTTTGAGAAGAGAATCGAAGGGTCGGGGGAT
CAAGTAGACACGTTAGAGCTCTCTGGCGGTGCTAAGATCAATCGCATTTTCCACGAACGCTTTC
CTTTTGAGATAGTGAAGATGGAGTTCAATGAGAAAGAACTGAGAAGAGAAATAAGCTATGCAAT
CAAAAACATACACGGGATCAGGACAGGGTTGTTTACTCCAGACATGGCGTTTGAGGCAATAGTC
AAAAAACAGATAGTAAAACTGAAAGGGCCTTCTTTGAAGAGTGTGGACCTGGTGATGCAGGAAC
TGATCAACACGGTGAAGAAGTGCACCAAGAGGCTGGCCAACTTCCCCAGACTTTGTGAAGAAAC
AGAAAGGATTGTTGCTAACCACATCCGTGAGCGAGAAGGAAAGACCAAGGACCAGGTCCTGCTA
CTGATTGACATTCAAGTCTCTTACATTAACACCAACCATGAGGACTTCATCGGCTTTGCAAATG
CTCAGCAGAGAAGCAGTCAGGTTCACAAGAAAAGCACAATTGGAAATCAGGTGATTCGGAAGGG
CTGGCTGACCGTCAGCAACATTGGCATCATGAAAGGAGGCTCGAAGGGCTACTGGTTTGTCCTC
ACGGCAGAAAGCTTGTCCTGGTATAAAGACGATGAGGAGAAAGAAAAGAAGTATATGCTTCCAC
TGGACAACCTGAAAGTCCGGGACGTGGAGAAAGGCTTCATGTCCAGCAAGCACGTCTTCGCACT
CTTCAACACAGAACAAAGGAATGTCTACAAAGACTATCGTTCCCTGGAGCTGGCCTGTGATTCC
CAGGAGGATGTGGACAGCTGGAAGGCGTCTCTGCTCAGAGCTGGCGTCTATCCAGACAAGTCTT
TTACTGAAAATGATGAAAATGGACAAGCAGAAAACTTCTCCATGGACCCGCAGTTGGAGAGGCA
AGTGGAGACTATTCGCAACCTCGTAGACTCCTACATGTCGATAATCAACAAATGCATCCGAGAC
CTAATTCCAAAAACAATAATGCACCTTATGATCAATAATGTTAAAGACTTCATCAACTCTGAAC
TCCTAGCACAGCTCTACTCCTCTGAGGACCAGAACACACTAATGGAAGAATCCGTGGAGCAGGC
TCAGCGCCGGGATGAGATGCTCCGGATGTACCAAGCCCTGAAAGAAGCCCTCGCGATCATTGGC
GACATCAACACGGTCACTGTGTCCACCCCAGCCCCACCTCCAGTAGATGACTCCTGGCTCCAGC
ATTCCAGAAGGTCACCTCCTCCAAGCCCCACCACCCAAAGAAGGCTGACTCTAAGTGCTCCCCT
CCCGAGGCCCGCATCTAGCCGTGGACCAGCTCCTGCCATTCCCTCTCCAGGCCCCCACTCTGGG
GCTCCCCCAGTCCCATTCCGTCCAGGCCCATTACCTCCTTTTCCCAACAGCAGTGACTCCTACG
GAGCCCCTCCACAGGTTCCATCCAGGCCCACAAGGGCACCCCCCAGTGTTCCAAGGTTTGGTGC
TGTGAAGGAGGAAGCTGTTGAGCCTTGAAGTCGCTGGGCTCAGAGTTCATGGAAACTGAGCAGC
CCGTGTGACTAGCCTGGGTGTCACTCCCTGCGGTCACCCACGGAAACATCCTGACTTACCCTCT
CCTCTCCTGACAGCCCTCTCAAACTGTGGTGTCTTTAGCAGCCGAGTGTCACTGGGACAAACGG
TGAAATCACCTTGTGATTTGTGATGTCAGCTGCTGCGAGCACTCTGTTTCTCCTGACTAGCCAG
CCCTCCTTAAAGAAAAAATAAAAACCATACTCAGACA

hide sequence

RefSeq Acc Id:

XM_017598662 ⟹ XP_017454151

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	74,363,532 - 74,838,134 (-)	NCBI
Rnor_6.0	13	79,906,711 - 80,379,966 (-)	NCBI

Sequence:

show sequence

GAGCTGTCAGGAGCCTAGCAGCGGGTGGCAGGGATCGGACGACGGTGCCGGGACTCAGCGGTGT
GAGCCCCGCGCATCAACAAACCGGACAAGTGCTGCGAGGCCCGGGCTGCCTGCCAGGTCGCTGA
GTCGCGCAGGGACCTGTGGGGCAGTTGGCCGCACAGGCAAGATGGGGAACCGGGAGATGGAAGA
ACTGATCCCTCTGGTGAACCGTCTGCAGGACGCTTTCTCGGCTCTGGGACAGAGCTGTCTGCTG
GAGCTGCCACAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCAGTGCTCGAGAACT
TCGTGGGCAGGGACTTTCTTCCTCGAGGCTCGGGCATTGTGACCAGACGACCTCTTGTACTCCA
GCTTGTCACCTCTAAAGCAGAATATGCCGAGTTTCTACATTGCAAAGGAAAAAAATTTACAGAT
TTTGATGAAGTTCGCCACGAGATCGAAGCAGAAACGGACCGAGTAACAGGAATGAATAAAGGCA
TCTCCTCTGTACCCATTAACCTTCGAGTCTACTCTCCCCACGTGTTAAACCTAACGCTAATCGA
CCTACCTGGAATAACGAAAGTGCCCGTGGGAGACCAGCCGCCAGATATTGAGTATCAGATCAGA
GATATGATTATGCAGTTCATCACCAGGGAGAACTGTCTGATTTTGGCTGTCACACCAGCCAACA
CCGATCTTGCGAACTCAGATGCCCTGAAGCTAGCCAAAGAAGTCGATCCTCAAGGCCTGAGGAC
CATTGGCGTTATCACCAAGCTGGATCTCATGGATGAAGGGACGGATGCCAGGGATGTACTAGAG
AACAAGCTGCTACCTCTCCGCAGGGGCTATGTGGGGGTGGTCAACCGAAGCCAGAAGGACATAG
ATGGAAAGAAGGACATTAAGGCAGCTATGCTGGCAGAAAGGAAATTTTTTCTCTCTCATCCAGC
ATATAGACACATTGCTGATCGGATGGGGACCCCACACCTCCAGAAGGTCCTGAATCAGCAACTT
ACCAACCATATCCGAGATACCCTGCCCAACTTCAGGAACAAGCTACAGGGGCAGCTGCTCTCCA
TAGAACATGAAGTAGAAGCCTTCAAAAACTTCAAACCGGAAGACCCCACAAGGAAGACCAAAGC
ACTGCTACAGATGGTCCAACAGTTCGCTGTGGACTTTGAGAAGAGAATCGAAGGGTCGGGGGAT
CAAGTAGACACGTTAGAGCTCTCTGGCGGTGCTAAGATCAATCGCATTTTCCACGAACGCTTTC
CTTTTGAGATAGTGAAGATGGAGTTCAATGAGAAAGAACTGAGAAGAGAAATAAGCTATGCAAT
CAAAAACATACACGGGATCAGGACAGGGTTGTTTACTCCAGACATGGCGTTTGAGGCAATAGTC
AAAAAACAGATAGTAAAACTGAAAGGGCCTTCTTTGAAGAGTGTGGACCTGGTGATGCAGGAAC
TGATCAACACGGTGAAGAAGTGCACCAAGAGGCTGGCCAACTTCCCCAGACTTTGTGAAGAAAC
AGAAAGGATTGTTGCTAACCACATCCGTGAGCGAGAAGGAAAGACCAAGGACCAGGTCCTGCTA
CTGATTGACATTCAAGTCTCTTACATTAACACCAACCATGAGGACTTCATCGGCTTTGCAAATG
CTCAGCAGAGAAGCAGTCAGGTTCACAAGAAAAGCACAATTGGAAATCAGGGAACCAATCTTCC
GCCTTCAAGGCAAATTGTGATTCGGAAGGGCTGGCTGACCGTCAGCAACATTGGCATCATGAAA
GGAGGCTCGAAGGGCTACTGGTTTGTCCTCACGGCAGAAAGCTTGTCCTGGTATAAAGACGATG
AGGAGAAAGAAAAGAAGTATATGCTTCCACTGGACAACCTGAAAGTCCGGGACGTGGAGAAAGG
CTTCATGTCCAGCAAGCACGTCTTCGCACTCTTCAACACAGAACAAAGGAATGTCTACAAAGAC
TATCGTTCCCTGGAGCTGGCCTGTGATTCCCAGGAGGATGTGGACAGCTGGAAGGCGTCTCTGC
TCAGAGCTGGCGTCTATCCAGACAAGTCTTTTGGGAGCAACAAAACTGAAAATGATGAAAATGG
ACAAGCAGAAAACTTCTCCATGGACCCGCAGTTGGAGAGGCAAGTGGAGACTATTCGCAACCTC
GTAGACTCCTACATGTCGATAATCAACAAATGCATCCGAGACCTAATTCCAAAAACAATAATGC
ACCTTATGATCAATAATGTTAAAGACTTCATCAACTCTGAACTCCTAGCACAGCTCTACTCCTC
TGAGGACCAGAACACACTAATGGAAGAATCCGTGGAGCAGGCTCAGCGCCGGGATGAGATGCTC
CGGATGTACCAAGCCCTGAAAGAAGCCCTCGCGATCATTGGCGACATCAACACGGTCACTGTGT
CCACCCCAGCCCCACCTCCAGTAGATGACTCCTGGCTCCAGCATTCCAGAAGGTCACCTCCTCC
AAGCCCCACCACCCAAAGAAGGCTGACTCTAAGTGCTCCCCTCCCGAGGCCCGCATCTAGCCGT
GGACCAGCTCCTGCCATTCCCTCTCCAGGCCCCCACTCTGGGGCTCCCCCAGTCCCATTCCGTC
CAGGCCCATTACCTCCTTTTCCCAACAGCAGTGACTCCTACGGAGCCCCTCCACAGGTTCCATC
CAGGCCCACAAGGGCACCCCCCAGTGTTCCAAGCCGGAGGCCACCCCCATCACCAACTCGCCCC
ACTATAATCCGTCCACTAGAGTCCTCACTGTTAGACTAAACGAAGTGTCCGGCATGGCAATTAA
ATCACTAATGATTCATGCAAAAGCAGCATTCGGTTACCTTTGCAGCCAACCATGAGTAGTCGCA
TGTATGGACCTCCATAGGCAAGTAGCCAGTCCTACTAACATGTTCATCGCTCATCTTCATTGCT
CATGGTGGGTTAGACCTTAGGGTTTGACTCTGAAAACCTGCTCACCTGTAGAGAGGCTTAATAT
GTTGTATTGACCGAGGTAGTTTTATAGAACAGTCCTATACTTTGGTACCACTTACCTGTCCAAC
AGATAGCAGAAATTGCTTTGGAAGAGTTTTCTAGGCTGTCTACAGAGGAGCTTACGAGGCTTCC
GAACAGACACAAGAGTGTGAGCTTGGAACCACACCGACTTCTCCCACATTCTGTTTTGGGTGGC
AGAAACTCTGCTGTCTGATATTAATGCCACCACTCAGTCCGCAGTTGCTTATTTAGGCTTCTTT
CCCTCCTTATTTCATAAGACTGCTAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATGGCAAGGTTTTTAAATCAGGATTGCTTAAATCGGGAGCCTTTCAGGAGCA
CGAGGCAGGCTGTAAAGGGAGCGTCTCCAGGGTTTGCTCCGGGGAGCGTCTCCTGTGCATTTTG
CTTCATGCTAGAAGCACAAGCAACATCAAGGCAAAGCTCGAGGGATTTTTGGTGATCGGTGGAT
AGGTTTGCCTACTTTTAGAGTTCAAAGAAGCAAAAGTAAATTGCCATTTCTAACAGTGTCTGGG
GAAATATAATTTATTATCTTATTATTTACCTCTTTGTGGGCTATGATGAAGGAAGGTTGGCATT
TCCAGTTGATTGGGGGAGGGGCATGGGTAACTAATTCCACTTAGTTATTATGATTATTATTTTG
GCTGGAGAAAAGTTAAGTGTATGCTAGCACATGATTTCTATGGTTTACATATAAATGACCATAG
AAGAATCCGTTTCAAAGTACTTTAATGTCTCTACCCATTCCAGACTCTCTTAAATCTTGCAGCT
TACCGTGGCACCATTGCGTGGAGAGTGTGGCCCCTGGTACGGGAAGGCAATTCATCAGAGATGC
CATGGTTTAGGAGCACAGCTCCTGGGTTTACAGACGCCTTGCCACGGCTTGCTCCCGAAAAGCA
GCCACACTGAGCTGCAGAAAAAGTTTGCAATTTCTAAGATCTCTGAACTTCACGAGTGCAGCCT
AGCCTACAGGTCATTAGTTCAGTCTTGAGGCTAAGTTTTGAACTACCTATGACCAGATGGTTAA
CAGAGCAAACAGCTAGAGGCCAAAAGGAATTCTGTCTGCTAACTGCACCCAGACTGCAGAGTGG
GCTGTCACTGAATTGCAGCATCCCGAGACAGTATTCCATAATCAAAAATCAAATCAGGTCTTAC
TAACTACAGCATCTCCCAATGACGGCGGTCAACATGATTTGTATGTGACCTTCACTTTAATTTC
CTGTGCAGTTTCTACCCAAAGCAAGGGGCTATAAAAAGTGTGATGTAAAGACGTTTAGCCATTA
TTTGAAAAAGTCTTCTTTTTTCTAAGTGAAAAATGTCACTGCATTGAATTTATTCTAATGGGTT
AGATCCCACTTATAATTGGCAAAAGTTGGAGAACATGAGACGTACAAAGGGGTGGTTTTCAACC
TTTAAGTTACACAGAATTACCAATGCTCTAGGTTCTCTATAATTTTTCCCTGTTGAAAAAAAAA
GTATTTGTGAATGGTACTCATGTAAGACATGCACATTGTCTTTGAAAGGTATCCCAGCTAAATG
GGAAAACGTTAGGCAAGCATTTATAATTGAACAACTCATAGACAATGAGGCTCTCCACAAAACC
CTTCCTTTCAGCACTCCCTTTTGGCTTCTTCCTATGAGTTCTCTAAAACAGGCAGCTAATGAAC
TAGATACTTCAGGGCTTGGCTTCGTTCTTCCTGTGGTTTTGCATCTTGCTATATTTCAAATTTT
TCGTTCGTTGGAGGAAACTATTGCAGAAAACCACTGGTGTGTTCTCAAATCAGCACAGGCCAAT
GTCAAGGAAAACTGGGGATTTGTCTCTCCAAACTTCTTCCCACTGATCCTAGACGGTAAACGAT
GGCGCTTGTCATCTTTAGCTTTTGCTTCTTGGTCCACAGATTCCCTGTCCCAAATGTGTCCCTT
TGTCAGGACAGTTTCGTCCTGCTGGCTACCGTGTTACATCTGGTGGAAGCCAGAATCCCCTACT
CTACCACCCCCCTCCCCAGAAGGCCAACCCTGGCACCTCAGAATAATTTCAGACGGCTGCGATT
CAAAGGGTCTGCACTCTGCTAACAGGAAGCACCAACATGAGCGAAGCCTGAAGTTTCACTGGAG
TGTGCACCGTGCACATCAGGCCTGGTGATGGGAATGGAAGCTCCAAGGGCCTCCTGCTTCCCAC
TCCGTTTCTGATCTCTCAGTCAGCCCTCCTGGTTGATGACCCCAGTGTTGTCAGCACAACAGGT
GTAGCTTTATCTTGTCTAGCATAATTAATAACTTTAAAAAGTGCTTTCGGGATGTGAAAAGGTA
ACTGTACGTGTTTGATAAGCCAATGTTCCTGTCTCGTGCTAAACTCTGCATGCAGACTGGTTAA
CCGGAATAACCAGCCATCAGTGGACGGACCATGAAACAGTATTTAGAACAGATGTATTTCCAAA
AAGCATCTACCAAGAATACCTTCTTGAATATTTGCCTTTAGTGTGTCTTATTACACAGAAGAGC
AGTGGGGTCTACTTATTGGCAATTTCTCTGTTTGTGCAGATACATACTCATTCTATCCAAAAGC
GTAACGAACAGTTCCTGTGACGTCAGCATTCTAGATTTAGAGTTAAGGAGTAGCCACATAGATT
CGTTCGTGATTTCTTTAGACTGTAGCCATACTCTAAGCTATGAAGTGGGACCTGACACCCGTAT
GTGACAAGTGTTTGCTGTCCAACTCGTTTTCTCTGCATGTCCCTAAGAATACACTACATATACA
GTGACCACGTGTTTCGTGTCCTTTTAAGTAAGTAGGTTCAAAAGCACTTACTAAAATGCCATTA
AGCATGATTGTGATTTTATGTACATCATATATATATGAATATAAATATCAGTGTAAACCTGTGC
TCAGTATGTAAGAGTATGAATATATTTTTAACTGTGCTAATATGTATGTTGGGAAGACTTGCCA
TAACATGATTACGGTAGTTCATTTCTCATGACCTCCGTGAGAAACAGAAGCTCTCCTAACTCAT
ACTGTATATATTCTGAGGGGCACAAAGCTTACGATAACCCTGATGATCACCATACTTATAGCCA
TGACAAGGCAATGTCTACGGTCCTTTGTATTGAAACCCACAGCACTGCTGCCTAAGAAGGCATT
ACTTTTGGGGTGATACTTTGATAAAAAAAAGTATAAGATTTGGGAGCTTTTCTCCAGGGTCTCT
AGTTAGAATGGTGTTATTTGGGAATTGTTGAGCTGACGCTTTAAAAAAAAAAAAAAAGGTTAAA
TGAGATCTCTTTAGTAAAGGTTAAAAGAATACAGAGTCAGCAAAACTATTAAAGCATGAGGGGG
ACAGGATACTCAATTCCTTGCAGGTATCTACTCTGTCAGGTAAACCTTGTACATTTGGAAAACA
GTACAATTACATCGATGGGACTCTCTGTAGGATGAGTGGCAAAACCTAAACAGACCTCCTAACT
GTCTTAATCCAGCAAGAGGTGACTGCATGTAAGACAGAAGCATGAGCGCTATCACTTCACCTCG
CACTAACCTGTGGACTAGAGTTCCTGTGAGTGAAGCCAATTTTAGAGAAATAACGGATAGTTCG
CCAGATCCTTTAGTCTTTTCTAAAGAACTCAGCTTGTCTCCTAGATAACAATAGGTCGTCTGTC
TAGCTGATGTGTTTAAAATTACGTGGTGCTCTGTGTGTGAAATTTTAACAATATTTTTGAAGCA
TATATAGTATATGCATCGCTAGTTGTGTATATATGCATACATGTAATAATATCTGTATGTGTGG
AGAGCAAGAGACAGGAACCTCAGAGAACCTCCTGTTTAAGGCCTGTCAGCACTGGTACACTGGT
GAGACTCCTCTTTCCACTGCTCAAGGACTACATGTGGCTCAACTCAAGGCATTCATTTCCTTAT
AACTTTTACCTTTAAGTCCCTTAAACTTTAACTCATAATGTTTTCGATTTATACAAAAACCACT
CCCGTCTTGTACTGACCGCTGCCAATCTGTGAAAACACCTCACAAACCAGAAACCCTACCACCA
TAGCCCTGTGTGTTTGATTTCATATACGCACTGCTTTTGTTCCATGGGCTTGTACGTGTTCCTC
CTCTCTCCCCGTTCTGAGTCAAACTTCATTTCGCTTTCGTGTGAATGACTGAGTACATAGAAGT
CAAACCTTGTTTTCTCCGTTGATTCTTTAACATGAACCAGAATACTTCCCACTGTCGTTTTTAC
CACTTTGGGGATTTCTTAATGCTGGATTAATATGGATTCTGTGAATGGGATTTTTTTGAAGCAA
ATTCCTAAAAGCCTGTATCATCCTTGAAGGTCATGTACCTATTGTGAAAAAAAAAATGTGAAAC
TGTATTTCTGAACCTGAAATAAATGATTACATTTGAAGGAA

hide sequence

RefSeq Acc Id:

XM_017598663 ⟹ XP_017454152

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	74,363,532 - 74,838,134 (-)	NCBI
Rnor_6.0	13	79,906,711 - 80,379,966 (-)	NCBI

Sequence:

show sequence

GAGCTGTCAGGAGCCTAGCAGCGGGTGGCAGGGATCGGACGACGGTGCCGGGACTCAGCGGTGT
GAGCCCCGCGCATCAACAAACCGGACAAGTGCTGCGAGGCCCGGGCTGCCTGCCAGGTCGCTGA
GTCGCGCAGGGACCTGTGGGGCAGTTGGCCGCACAGGCAAGATGGGGAACCGGGAGATGGAAGA
ACTGATCCCTCTGGTGAACCGTCTGCAGGACGCTTTCTCGGCTCTGGGACAGAGCTGTCTGCTG
GAGCTGCCACAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCAGTGCTCGAGAACT
TCGTGGGCAGGGACTTTCTTCCTCGAGGCTCGGGCATTGTGACCAGACGACCTCTTGTACTCCA
GCTTGTCACCTCTAAAGCAGAATATGCCGAGTTTCTACATTGCAAAGGAAAAAAATTTACAGAT
TTTGATGAAGTTCGCCACGAGATCGAAGCAGAAACGGACCGAGTAACAGGAATGAATAAAGGCA
TCTCCTCTGTACCCATTAACCTTCGAGTCTACTCTCCCCACGTGTTAAACCTAACGCTAATCGA
CCTACCTGGAATAACGAAAGTGCCCGTGGGAGACCAGCCGCCAGATATTGAGTATCAGATCAGA
GATATGATTATGCAGTTCATCACCAGGGAGAACTGTCTGATTTTGGCTGTCACACCAGCCAACA
CCGATCTTGCGAACTCAGATGCCCTGAAGCTAGCCAAAGAAGTCGATCCTCAAGGCCTGAGGAC
CATTGGCGTTATCACCAAGCTGGATCTCATGGATGAAGGGACGGATGCCAGGGATGTACTAGAG
AACAAGCTGCTACCTCTCCGCAGGGGCTATGTGGGGGTGGTCAACCGAAGCCAGAAGGACATAG
ATGGAAAGAAGGACATTAAGGCAGCTATGCTGGCAGAAAGGAAATTTTTTCTCTCTCATCCAGC
ATATAGACACATTGCTGATCGGATGGGGACCCCACACCTCCAGAAGGTCCTGAATCAGCAACTT
ACCAACCATATCCGAGATACCCTGCCCAACTTCAGGAACAAGCTACAGGGGCAGCTGCTCTCCA
TAGAACATGAAGTAGAAGCCTTCAAAAACTTCAAACCGGAAGACCCCACAAGGAAGACCAAAGC
ACTGCTACAGATGGTCCAACAGTTCGCTGTGGACTTTGAGAAGAGAATCGAAGGGTCGGGGGAT
CAAGTAGACACGTTAGAGCTCTCTGGCGGTGCTAAGATCAATCGCATTTTCCACGAACGCTTTC
CTTTTGAGATAGTGAAGATGGAGTTCAATGAGAAAGAACTGAGAAGAGAAATAAGCTATGCAAT
CAAAAACATACACGGGATCAGGACAGGGTTGTTTACTCCAGACATGGCGTTTGAGGCAATAGTC
AAAAAACAGATAGTAAAACTGAAAGGGCCTTCTTTGAAGAGTGTGGACCTGGTGATGCAGGAAC
TGATCAACACGGTGAAGAAGTGCACCAAGAGGCTGGCCAACTTCCCCAGACTTTGTGAAGAAAC
AGAAAGGATTGTTGCTAACCACATCCGTGAGCGAGAAGGAAAGACCAAGGACCAGGTCCTGCTA
CTGATTGACATTCAAGTCTCTTACATTAACACCAACCATGAGGACTTCATCGGCTTTGCAAATG
CTCAGCAGAGAAGCAGTCAGGTTCACAAGAAAAGCACAATTGGAAATCAGGTGATTCGGAAGGG
CTGGCTGACCGTCAGCAACATTGGCATCATGAAAGGAGGCTCGAAGGGCTACTGGTTTGTCCTC
ACGGCAGAAAGCTTGTCCTGGTATAAAGACGATGAGGAGAAAGAAAAGAAGTATATGCTTCCAC
TGGACAACCTGAAAGTCCGGGACGTGGAGAAAGGCTTCATGTCCAGCAAGCACGTCTTCGCACT
CTTCAACACAGAACAAAGGAATGTCTACAAAGACTATCGTTCCCTGGAGCTGGCCTGTGATTCC
CAGGAGGATGTGGACAGCTGGAAGGCGTCTCTGCTCAGAGCTGGCGTCTATCCAGACAAGTCTT
TTGGGAGCAACAAAACTGAAAATGATGAAAATGGACAAGCAGAAAACTTCTCCATGGACCCGCA
GTTGGAGAGGCAAGTGGAGACTATTCGCAACCTCGTAGACTCCTACATGTCGATAATCAACAAA
TGCATCCGAGACCTAATTCCAAAAACAATAATGCACCTTATGATCAATAATGTTAAAGACTTCA
TCAACTCTGAACTCCTAGCACAGCTCTACTCCTCTGAGGACCAGAACACACTAATGGAAGAATC
CGTGGAGCAGGCTCAGCGCCGGGATGAGATGCTCCGGATGTACCAAGCCCTGAAAGAAGCCCTC
GCGATCATTGGCGACATCAACACGGTCACTGTGTCCACCCCAGCCCCACCTCCAGTAGATGACT
CCTGGCTCCAGCATTCCAGAAGGTCACCTCCTCCAAGCCCCACCACCCAAAGAAGGCTGACTCT
AAGTGCTCCCCTCCCGAGGCCCGCATCTAGCCGTGGACCAGCTCCTGCCATTCCCTCTCCAGGC
CCCCACTCTGGGGCTCCCCCAGTCCCATTCCGTCCAGGCCCATTACCTCCTTTTCCCAACAGCA
GTGACTCCTACGGAGCCCCTCCACAGGTTCCATCCAGGCCCACAAGGGCACCCCCCAGTGTTCC
AAGCCGGAGGCCACCCCCATCACCAACTCGCCCCACTATAATCCGTCCACTAGAGTCCTCACTG
TTAGACTAAACGAAGTGTCCGGCATGGCAATTAAATCACTAATGATTCATGCAAAAGCAGCATT
CGGTTACCTTTGCAGCCAACCATGAGTAGTCGCATGTATGGACCTCCATAGGCAAGTAGCCAGT
CCTACTAACATGTTCATCGCTCATCTTCATTGCTCATGGTGGGTTAGACCTTAGGGTTTGACTC
TGAAAACCTGCTCACCTGTAGAGAGGCTTAATATGTTGTATTGACCGAGGTAGTTTTATAGAAC
AGTCCTATACTTTGGTACCACTTACCTGTCCAACAGATAGCAGAAATTGCTTTGGAAGAGTTTT
CTAGGCTGTCTACAGAGGAGCTTACGAGGCTTCCGAACAGACACAAGAGTGTGAGCTTGGAACC
ACACCGACTTCTCCCACATTCTGTTTTGGGTGGCAGAAACTCTGCTGTCTGATATTAATGCCAC
CACTCAGTCCGCAGTTGCTTATTTAGGCTTCTTTCCCTCCTTATTTCATAAGACTGCTAAAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATGGCAAGGTTTTTAAAT
CAGGATTGCTTAAATCGGGAGCCTTTCAGGAGCACGAGGCAGGCTGTAAAGGGAGCGTCTCCAG
GGTTTGCTCCGGGGAGCGTCTCCTGTGCATTTTGCTTCATGCTAGAAGCACAAGCAACATCAAG
GCAAAGCTCGAGGGATTTTTGGTGATCGGTGGATAGGTTTGCCTACTTTTAGAGTTCAAAGAAG
CAAAAGTAAATTGCCATTTCTAACAGTGTCTGGGGAAATATAATTTATTATCTTATTATTTACC
TCTTTGTGGGCTATGATGAAGGAAGGTTGGCATTTCCAGTTGATTGGGGGAGGGGCATGGGTAA
CTAATTCCACTTAGTTATTATGATTATTATTTTGGCTGGAGAAAAGTTAAGTGTATGCTAGCAC
ATGATTTCTATGGTTTACATATAAATGACCATAGAAGAATCCGTTTCAAAGTACTTTAATGTCT
CTACCCATTCCAGACTCTCTTAAATCTTGCAGCTTACCGTGGCACCATTGCGTGGAGAGTGTGG
CCCCTGGTACGGGAAGGCAATTCATCAGAGATGCCATGGTTTAGGAGCACAGCTCCTGGGTTTA
CAGACGCCTTGCCACGGCTTGCTCCCGAAAAGCAGCCACACTGAGCTGCAGAAAAAGTTTGCAA
TTTCTAAGATCTCTGAACTTCACGAGTGCAGCCTAGCCTACAGGTCATTAGTTCAGTCTTGAGG
CTAAGTTTTGAACTACCTATGACCAGATGGTTAACAGAGCAAACAGCTAGAGGCCAAAAGGAAT
TCTGTCTGCTAACTGCACCCAGACTGCAGAGTGGGCTGTCACTGAATTGCAGCATCCCGAGACA
GTATTCCATAATCAAAAATCAAATCAGGTCTTACTAACTACAGCATCTCCCAATGACGGCGGTC
AACATGATTTGTATGTGACCTTCACTTTAATTTCCTGTGCAGTTTCTACCCAAAGCAAGGGGCT
ATAAAAAGTGTGATGTAAAGACGTTTAGCCATTATTTGAAAAAGTCTTCTTTTTTCTAAGTGAA
AAATGTCACTGCATTGAATTTATTCTAATGGGTTAGATCCCACTTATAATTGGCAAAAGTTGGA
GAACATGAGACGTACAAAGGGGTGGTTTTCAACCTTTAAGTTACACAGAATTACCAATGCTCTA
GGTTCTCTATAATTTTTCCCTGTTGAAAAAAAAAGTATTTGTGAATGGTACTCATGTAAGACAT
GCACATTGTCTTTGAAAGGTATCCCAGCTAAATGGGAAAACGTTAGGCAAGCATTTATAATTGA
ACAACTCATAGACAATGAGGCTCTCCACAAAACCCTTCCTTTCAGCACTCCCTTTTGGCTTCTT
CCTATGAGTTCTCTAAAACAGGCAGCTAATGAACTAGATACTTCAGGGCTTGGCTTCGTTCTTC
CTGTGGTTTTGCATCTTGCTATATTTCAAATTTTTCGTTCGTTGGAGGAAACTATTGCAGAAAA
CCACTGGTGTGTTCTCAAATCAGCACAGGCCAATGTCAAGGAAAACTGGGGATTTGTCTCTCCA
AACTTCTTCCCACTGATCCTAGACGGTAAACGATGGCGCTTGTCATCTTTAGCTTTTGCTTCTT
GGTCCACAGATTCCCTGTCCCAAATGTGTCCCTTTGTCAGGACAGTTTCGTCCTGCTGGCTACC
GTGTTACATCTGGTGGAAGCCAGAATCCCCTACTCTACCACCCCCCTCCCCAGAAGGCCAACCC
TGGCACCTCAGAATAATTTCAGACGGCTGCGATTCAAAGGGTCTGCACTCTGCTAACAGGAAGC
ACCAACATGAGCGAAGCCTGAAGTTTCACTGGAGTGTGCACCGTGCACATCAGGCCTGGTGATG
GGAATGGAAGCTCCAAGGGCCTCCTGCTTCCCACTCCGTTTCTGATCTCTCAGTCAGCCCTCCT
GGTTGATGACCCCAGTGTTGTCAGCACAACAGGTGTAGCTTTATCTTGTCTAGCATAATTAATA
ACTTTAAAAAGTGCTTTCGGGATGTGAAAAGGTAACTGTACGTGTTTGATAAGCCAATGTTCCT
GTCTCGTGCTAAACTCTGCATGCAGACTGGTTAACCGGAATAACCAGCCATCAGTGGACGGACC
ATGAAACAGTATTTAGAACAGATGTATTTCCAAAAAGCATCTACCAAGAATACCTTCTTGAATA
TTTGCCTTTAGTGTGTCTTATTACACAGAAGAGCAGTGGGGTCTACTTATTGGCAATTTCTCTG
TTTGTGCAGATACATACTCATTCTATCCAAAAGCGTAACGAACAGTTCCTGTGACGTCAGCATT
CTAGATTTAGAGTTAAGGAGTAGCCACATAGATTCGTTCGTGATTTCTTTAGACTGTAGCCATA
CTCTAAGCTATGAAGTGGGACCTGACACCCGTATGTGACAAGTGTTTGCTGTCCAACTCGTTTT
CTCTGCATGTCCCTAAGAATACACTACATATACAGTGACCACGTGTTTCGTGTCCTTTTAAGTA
AGTAGGTTCAAAAGCACTTACTAAAATGCCATTAAGCATGATTGTGATTTTATGTACATCATAT
ATATATGAATATAAATATCAGTGTAAACCTGTGCTCAGTATGTAAGAGTATGAATATATTTTTA
ACTGTGCTAATATGTATGTTGGGAAGACTTGCCATAACATGATTACGGTAGTTCATTTCTCATG
ACCTCCGTGAGAAACAGAAGCTCTCCTAACTCATACTGTATATATTCTGAGGGGCACAAAGCTT
ACGATAACCCTGATGATCACCATACTTATAGCCATGACAAGGCAATGTCTACGGTCCTTTGTAT
TGAAACCCACAGCACTGCTGCCTAAGAAGGCATTACTTTTGGGGTGATACTTTGATAAAAAAAA
GTATAAGATTTGGGAGCTTTTCTCCAGGGTCTCTAGTTAGAATGGTGTTATTTGGGAATTGTTG
AGCTGACGCTTTAAAAAAAAAAAAAAAGGTTAAATGAGATCTCTTTAGTAAAGGTTAAAAGAAT
ACAGAGTCAGCAAAACTATTAAAGCATGAGGGGGACAGGATACTCAATTCCTTGCAGGTATCTA
CTCTGTCAGGTAAACCTTGTACATTTGGAAAACAGTACAATTACATCGATGGGACTCTCTGTAG
GATGAGTGGCAAAACCTAAACAGACCTCCTAACTGTCTTAATCCAGCAAGAGGTGACTGCATGT
AAGACAGAAGCATGAGCGCTATCACTTCACCTCGCACTAACCTGTGGACTAGAGTTCCTGTGAG
TGAAGCCAATTTTAGAGAAATAACGGATAGTTCGCCAGATCCTTTAGTCTTTTCTAAAGAACTC
AGCTTGTCTCCTAGATAACAATAGGTCGTCTGTCTAGCTGATGTGTTTAAAATTACGTGGTGCT
CTGTGTGTGAAATTTTAACAATATTTTTGAAGCATATATAGTATATGCATCGCTAGTTGTGTAT
ATATGCATACATGTAATAATATCTGTATGTGTGGAGAGCAAGAGACAGGAACCTCAGAGAACCT
CCTGTTTAAGGCCTGTCAGCACTGGTACACTGGTGAGACTCCTCTTTCCACTGCTCAAGGACTA
CATGTGGCTCAACTCAAGGCATTCATTTCCTTATAACTTTTACCTTTAAGTCCCTTAAACTTTA
ACTCATAATGTTTTCGATTTATACAAAAACCACTCCCGTCTTGTACTGACCGCTGCCAATCTGT
GAAAACACCTCACAAACCAGAAACCCTACCACCATAGCCCTGTGTGTTTGATTTCATATACGCA
CTGCTTTTGTTCCATGGGCTTGTACGTGTTCCTCCTCTCTCCCCGTTCTGAGTCAAACTTCATT
TCGCTTTCGTGTGAATGACTGAGTACATAGAAGTCAAACCTTGTTTTCTCCGTTGATTCTTTAA
CATGAACCAGAATACTTCCCACTGTCGTTTTTACCACTTTGGGGATTTCTTAATGCTGGATTAA
TATGGATTCTGTGAATGGGATTTTTTTGAAGCAAATTCCTAAAAGCCTGTATCATCCTTGAAGG
TCATGTACCTATTGTGAAAAAAAAAATGTGAAACTGTATTTCTGAACCTGAAATAAATGATTAC
ATTTGAAGGAA

hide sequence

RefSeq Acc Id:

XM_017598664 ⟹ XP_017454153

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	74,379,843 - 74,838,134 (-)	NCBI
Rnor_6.0	13	79,923,000 - 80,379,967 (-)	NCBI

Sequence:

show sequence

TGAGCTGTCAGGAGCCTAGCAGCGGGTGGCAGGGATCGGACGACGGTGCCGGGACTCAGCGGTG
TGAGCCCCGCGCATCAACAAACCGGACAAGTGCTGCGAGGCCCGGGCTGCCTGCCAGGTCGCTG
AGTCGCGCAGGGACCTGTGGGGCAGTTGGCCGCACAGGCAAGATGGGGAACCGGGAGATGGAAG
AACTGATCCCTCTGGTGAACCGTCTGCAGGACGCTTTCTCGGCTCTGGGACAGAGCTGTCTGCT
GGAGCTGCCACAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCAGTGCTCGAGAAC
TTCGTGGGCAGGGACTTTCTTCCTCGAGGCTCGGGCATTGTGACCAGACGACCTCTTGTACTCC
AGCTTGTCACCTCTAAAGCAGAATATGCCGAGTTTCTACATTGCAAAGGAAAAAAATTTACAGA
TTTTGATGAAGTTCGCCACGAGATCGAAGCAGAAACGGACCGAGTAACAGGAATGAATAAAGGC
ATCTCCTCTGTACCCATTAACCTTCGAGTCTACTCTCCCCACGTGTTAAACCTAACGCTAATCG
ACCTACCTGGAATAACGAAAGTGCCCGTGGGAGACCAGCCGCCAGATATTGAGTATCAGATCAG
AGATATGATTATGCAGTTCATCACCAGGGAGAACTGTCTGATTTTGGCTGTCACACCAGCCAAC
ACCGATCTTGCGAACTCAGATGCCCTGAAGCTAGCCAAAGAAGTCGATCCTCAAGGCCTGAGGA
CCATTGGCGTTATCACCAAGCTGGATCTCATGGATGAAGGGACGGATGCCAGGGATGTACTAGA
GAACAAGCTGCTACCTCTCCGCAGGGGCTATGTGGGGGTGGTCAACCGAAGCCAGAAGGACATA
GATGGAAAGAAGGACATTAAGGCAGCTATGCTGGCAGAAAGGAAATTTTTTCTCTCTCATCCAG
CATATAGACACATTGCTGATCGGATGGGGACCCCACACCTCCAGAAGGTCCTGAATCAGCAACT
TACCAACCATATCCGAGATACCCTGCCCAACTTCAGGAACAAGCTACAGGGGCAGCTGCTCTCC
ATAGAACATGAAGTAGAAGCCTTCAAAAACTTCAAACCGGAAGACCCCACAAGGAAGACCAAAG
CACTGCTACAGATGGTCCAACAGTTCGCTGTGGACTTTGAGAAGAGAATCGAAGGGTCGGGGGA
TCAAGTAGACACGTTAGAGCTCTCTGGCGGTGCTAAGATCAATCGCATTTTCCACGAACGCTTT
CCTTTTGAGATAGTGAAGATGGAGTTCAATGAGAAAGAACTGAGAAGAGAAATAAGCTATGCAA
TCAAAAACATACACGGGATCAGGACAGGGTTGTTTACTCCAGACATGGCGTTTGAGGCAATAGT
CAAAAAACAGATAGTAAAACTGAAAGGGCCTTCTTTGAAGAGTGTGGACCTGGTGATGCAGGAA
CTGATCAACACGGTGAAGAAGTGCACCAAGAGGCTGGCCAACTTCCCCAGACTTTGTGAAGAAA
CAGAAAGGATTGTTGCTAACCACATCCGTGAGCGAGAAGGAAAGACCAAGGACCAGGTCCTGCT
ACTGATTGACATTCAAGTCTCTTACATTAACACCAACCATGAGGACTTCATCGGCTTTGCAAAT
GCTCAGCAGAGAAGCAGTCAGGTTCACAAGAAAAGCACAATTGGAAATCAGGGAACCAATCTTC
CGCCTTCAAGGCAAATTGTGATTCGGAAGGGCTGGCTGACCGTCAGCAACATTGGCATCATGAA
AGGAGGCTCGAAGGGCTACTGGTTTGTCCTCACGGCAGAAAGCTTGTCCTGGTATAAAGACGAT
GAGGAGAAAGAAAAGAAGTATATGCTTCCACTGGACAACCTGAAAGTCCGGGACGTGGAGAAAG
GCTTCATGTCCAGCAAGCACGTCTTCGCACTCTTCAACACAGAACAAAGGAATGTCTACAAAGA
CTATCGTTCCCTGGAGCTGGCCTGTGATTCCCAGGAGGATGTGGACAGCTGGAAGGCGTCTCTG
CTCAGAGCTGGCGTCTATCCAGACAAGTCTTTTGGGAGCAACAAAACTGAAAATGATGAAAATG
GACAAGCAGAAAACTTCTCCATGGACCCGCAGTTGGAGAGGCAAGTGGAGACTATTCGCAACCT
CGTAGACTCCTACATGTCGATAATCAACAAATGCATCCGAGACCTAATTCCAAAAACAATAATG
CACCTTATGATCAATAATGTTAAAGACTTCATCAACTCTGAACTCCTAGCACAGCTCTACTCCT
CTGAGGACCAGAACACACTAATGGAAGAATCCGTGGAGCAGGCTCAGCGCCGGGATGAGATGCT
CCGGATGTACCAAGCCCTGAAAGAAGCCCTCGCGATCATTGGCGACATCAACACGGTCACTGTG
TCCACCCCAGCCCCACCTCCAGTAGATGACTCCTGGCTCCAGCATTCCAGAAGGTCACCTCCTC
CAAGCCCCACCACCCAAAGAAGGCTGACTCTAAGTGCTCCCCTCCCGAGGCCCGCATCTAGCCG
TGGACCAGCTCCTGCCATTCCCTCTCCAGGCCCCCACTCTGGGGCTCCCCCAGTCCCATTCCGT
CCAGGCCCATTACCTCCTTTTCCCAACAGCAGTGACTCCTACGGAGCCCCTCCACAGGTTCCAT
CCAGGCCCACAAGGGCACCCCCCAGTGTTCCAAGGTTTGGTGCTGTGAAGGAGGAAGCTGTTGA
GCCTTGAAGTCGCTGGGCTCAGAGTTCATGGAAACTGAGCAGCCCGTGTGACTAGCCTGGGTGT
CACTCCCTGCGGTCACCCACGGAAACATCCTGACTTACCCTCTCCTCTCCTGACAGCCCTCTCA
AACTGTGGTGTCTTTAGCAGCCGAGTGTCACTGGGACAAACGGTGAAATCACCTTGTGATTTGT
GATGTCAGCTGCTGCGAGCACTCTGTTTCTCCTGACTAGCCAGCCCTCCTTAAAGAAAAAATAA
AAACCATACTCAGACA

hide sequence

RefSeq Acc Id:

XM_039090311 ⟹ XP_038946239

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	74,359,043 - 74,838,135 (-)	NCBI

RefSeq Acc Id:

XM_039090312 ⟹ XP_038946240

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	74,501,053 - 74,838,133 (-)	NCBI

RefSeq Acc Id:

XM_039090313 ⟹ XP_038946241

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	74,597,237 - 74,838,133 (-)	NCBI

RefSeq Acc Id:

XM_039090316 ⟹ XP_038946244

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	74,597,237 - 74,838,131 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_612547	(Get FASTA)	NCBI Sequence Viewer
	XP_006250203	(Get FASTA)	NCBI Sequence Viewer
	XP_006250204	(Get FASTA)	NCBI Sequence Viewer
	XP_017454151	(Get FASTA)	NCBI Sequence Viewer
	XP_017454152	(Get FASTA)	NCBI Sequence Viewer
	XP_017454153	(Get FASTA)	NCBI Sequence Viewer
	XP_038946239	(Get FASTA)	NCBI Sequence Viewer
	XP_038946240	(Get FASTA)	NCBI Sequence Viewer
	XP_038946241	(Get FASTA)	NCBI Sequence Viewer
	XP_038946244	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF07848	(Get FASTA)	NCBI Sequence Viewer
	BAA03161	(Get FASTA)	NCBI Sequence Viewer
	EDM09406	(Get FASTA)	NCBI Sequence Viewer
	EDM09407	(Get FASTA)	NCBI Sequence Viewer
	EDM09408	(Get FASTA)	NCBI Sequence Viewer
	Q08877	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_612547 ⟸ NM_138538

- UniProtKB:

Q08877 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGNREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV
TRRPLVLQLVTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLRVYSPH
VLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKE
VDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDIKAAMLAER
KFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAFKNFKPE
DPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFHERFPFEIVKMEFNEKEL
RREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKLKGPSLKSVDLVMQELINTVKKCTKRLAN
FPRLCEETERIVANHIREREGKTKDQVLLLIDIQVSYINTNHEDFIGFANAQQRSSQVHKKSTI
GNQGTNLPPSRQIVIRKGWLTVSNIGIMKGGSKGYWFVLTAESLSWYKDDEEKEKKYMLPLDNL
KVRDVEKGFMSSKHVFALFNTEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFTEN
DENGQAENFSMDPQLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQ
LYSSEDQNTLMEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQHSRR
SPPPSPTTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDSYGAPP
QVPSRPTRAPPSVPSRRPPPSPTRPTIIRPLESSLLD

hide sequence

RefSeq Acc Id:	XP_006250203 ⟸ XM_006250141
- Peptide Label:	isoform X5
- UniProtKB:	Q08877 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGNREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV TRRPLVLQLVTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLRVYSPH VLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKE VDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDIKAAMLAER KFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAFKNFKPE DPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFHERFPFEIVKMEFNEKEL RREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKLKGPSLKSVDLVMQELINTVKKCTKRLAN FPRLCEETERIVANHIREREGKTKDQVLLLIDIQVSYINTNHEDFIGFANAQQRSSQVHKKSTI GNQVIRKGWLTVSNIGIMKGGSKGYWFVLTAESLSWYKDDEEKEKKYMLPLDNLKVRDVEKGFM SSKHVFALFNTEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFTENDENGQAENFS MDPQLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTL MEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQHSRRSPPPSPTTQR RLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDSYGAPPQVPSRPTRAP PSVPSRRPPPSPTRPTIIRPLESSLLD hide sequence

RefSeq Acc Id:	XP_006250204 ⟸ XM_006250142
- Peptide Label:	isoform X6
- UniProtKB:	Q08877 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGNREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV TRRPLVLQLVTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLRVYSPH VLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKE VDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDIKAAMLAER KFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAFKNFKPE DPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFHERFPFEIVKMEFNEKEL RREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKLKGPSLKSVDLVMQELINTVKKCTKRLAN FPRLCEETERIVANHIREREGKTKDQVLLLIDIQVSYINTNHEDFIGFANAQQRSSQVHKKSTI GNQVIRKGWLTVSNIGIMKGGSKGYWFVLTAESLSWYKDDEEKEKKYMLPLDNLKVRDVEKGFM SSKHVFALFNTEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFTENDENGQAENFS MDPQLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTL MEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQHSRRSPPPSPTTQR RLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDSYGAPPQVPSRPTRAP PSVPRFGAVKEEAVEP hide sequence

RefSeq Acc Id:

XP_017454152 ⟸ XM_017598663

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGNREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV
TRRPLVLQLVTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLRVYSPH
VLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKE
VDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDIKAAMLAER
KFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAFKNFKPE
DPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFHERFPFEIVKMEFNEKEL
RREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKLKGPSLKSVDLVMQELINTVKKCTKRLAN
FPRLCEETERIVANHIREREGKTKDQVLLLIDIQVSYINTNHEDFIGFANAQQRSSQVHKKSTI
GNQVIRKGWLTVSNIGIMKGGSKGYWFVLTAESLSWYKDDEEKEKKYMLPLDNLKVRDVEKGFM
SSKHVFALFNTEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFGSNKTENDENGQA
ENFSMDPQLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSED
QNTLMEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQHSRRSPPPSP
TTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDSYGAPPQVPSRP
TRAPPSVPSRRPPPSPTRPTIIRPLESSLLD

hide sequence

RefSeq Acc Id:

XP_017454151 ⟸ XM_017598662

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGNREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV
TRRPLVLQLVTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLRVYSPH
VLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKE
VDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDIKAAMLAER
KFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAFKNFKPE
DPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFHERFPFEIVKMEFNEKEL
RREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKLKGPSLKSVDLVMQELINTVKKCTKRLAN
FPRLCEETERIVANHIREREGKTKDQVLLLIDIQVSYINTNHEDFIGFANAQQRSSQVHKKSTI
GNQGTNLPPSRQIVIRKGWLTVSNIGIMKGGSKGYWFVLTAESLSWYKDDEEKEKKYMLPLDNL
KVRDVEKGFMSSKHVFALFNTEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFGSN
KTENDENGQAENFSMDPQLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSE
LLAQLYSSEDQNTLMEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQ
HSRRSPPPSPTTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDSY
GAPPQVPSRPTRAPPSVPSRRPPPSPTRPTIIRPLESSLLD

hide sequence

RefSeq Acc Id:

XP_017454153 ⟸ XM_017598664

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGNREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV
TRRPLVLQLVTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLRVYSPH
VLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKE
VDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDIKAAMLAER
KFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAFKNFKPE
DPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFHERFPFEIVKMEFNEKEL
RREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKLKGPSLKSVDLVMQELINTVKKCTKRLAN
FPRLCEETERIVANHIREREGKTKDQVLLLIDIQVSYINTNHEDFIGFANAQQRSSQVHKKSTI
GNQGTNLPPSRQIVIRKGWLTVSNIGIMKGGSKGYWFVLTAESLSWYKDDEEKEKKYMLPLDNL
KVRDVEKGFMSSKHVFALFNTEQRNVYKDYRSLELACDSQEDVDSWKASLLRAGVYPDKSFGSN
KTENDENGQAENFSMDPQLERQVETIRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSE
LLAQLYSSEDQNTLMEESVEQAQRRDEMLRMYQALKEALAIIGDINTVTVSTPAPPPVDDSWLQ
HSRRSPPPSPTTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDSY
GAPPQVPSRPTRAPPSVPRFGAVKEEAVEP

hide sequence

RefSeq Acc Id:

ENSRNOP00000063767 ⟸ ENSRNOT00000067653

RefSeq Acc Id:

ENSRNOP00000068044 ⟸ ENSRNOT00000075938

RefSeq Acc Id:	XP_038946239 ⟸ XM_039090311
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038946240 ⟸ XM_039090312
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038946241 ⟸ XM_039090313
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038946244 ⟸ XM_039090316
- Peptide Label:	isoform X8

RefSeq Acc Id:

ENSRNOP00000088404 ⟸ ENSRNOT00000104847

RefSeq Acc Id:

ENSRNOP00000085302 ⟸ ENSRNOT00000098479

RefSeq Acc Id:

ENSRNOP00000084111 ⟸ ENSRNOT00000102382

RefSeq Acc Id:

ENSRNOP00000088872 ⟸ ENSRNOT00000106497

Protein Domains

Dynamin-type G GED PH

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698940

Promoter ID:

EPDNEW_R9464

Type:

single initiation site

Name:

Dnm3_1

Description:

dynamin 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	80,379,968 - 80,380,028	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:727949	AgrOrtholog
Ensembl Genes	ENSRNOG00000026490	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000063767	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000068044	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000088404	ENTREZGENE
Ensembl Transcript	ENSRNOT00000067653	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000075938	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000104847	ENTREZGENE
Gene3D-CATH	2.30.29.30	UniProtKB/Swiss-Prot
	3.40.50.300	UniProtKB/Swiss-Prot
InterPro	Dynamin_central	UniProtKB/Swiss-Prot
	Dynamin_GTPase	UniProtKB/Swiss-Prot
	Dynamin_GTPase_CS	UniProtKB/Swiss-Prot
	Dynamin_SF	UniProtKB/Swiss-Prot
	G_DYNAMIN_dom	UniProtKB/Swiss-Prot
	GED	UniProtKB/Swiss-Prot
	GED_dom	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	PH-like_dom_sf	UniProtKB/Swiss-Prot
	PH_domain	UniProtKB/Swiss-Prot
KEGG Report	rno:171574	UniProtKB/Swiss-Prot
NCBI Gene	171574	ENTREZGENE
PANTHER	PTHR11566	UniProtKB/Swiss-Prot
Pfam	Dynamin_M	UniProtKB/Swiss-Prot
	Dynamin_N	UniProtKB/Swiss-Prot
	GED	UniProtKB/Swiss-Prot
	PF00169	UniProtKB/Swiss-Prot
PhenoGen	Dnm3	PhenoGen
PRINTS	DYNAMIN	UniProtKB/Swiss-Prot
PROSITE	G_DYNAMIN_1	UniProtKB/Swiss-Prot
	G_DYNAMIN_2	UniProtKB/Swiss-Prot
	GED	UniProtKB/Swiss-Prot
	PH_DOMAIN	UniProtKB/Swiss-Prot
SMART	DYNc	UniProtKB/Swiss-Prot
	GED	UniProtKB/Swiss-Prot
	SM00233	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	DYN3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q9QXL9	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-07-08	Dnm3	dynamin 3	LOC171574	testicular dynamin	Symbol and Name updated	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in seminferous tubules of testis, in Sertoli cells	1299610

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)