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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - CTD | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Kidney Neoplasms | ISO | RGD:1354127 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:28321044 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsMolecular Pathway AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway AnnotationsReferences - curated| 1. | Cao H, etal., Mol Biol Cell. 1998 Sep;9(9):2595-609. |
| 2. | Cook T, etal., J Neurochem 1996 Sep;67(3):927-31. |
| 3. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 4. | Gray NW, etal., Curr Biol. 2003 Mar 18;13(6):510-5. |
| 5. | Gray NW, etal., J Cell Sci. 2005 Mar 15;118(Pt 6):1279-90. Epub 2005 Mar 1. |
| 6. | Hyndman KA, etal., Am J Physiol Renal Physiol. 2011 Apr 13. |
| 7. | Ikeuchi Y, etal., Cell Rep. 2013 Sep 12;4(5):879-89. doi: 10.1016/j.celrep.2013.07.042. Epub 2013 Aug 29. |
| 8. | Lu J, etal., Neuron. 2007 Sep 20;55(6):874-89. |
| 9. | Meckler X, etal., Eur J Neurosci. 2006 Nov;24(9):2439-43. |
| 10. | Nakata T, etal., J Cell Sci 1993 May;105 ( Pt 1):1-5. |
| 11. | NCBI rat LocusLink and RefSeq merged data October 15, 2003 |
| 12. | Pipeline to import KEGG annotations from KEGG into RGD |
| 13. | RGD automated data pipeline |
| 14. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 15. | RGD automated import pipeline for gene-chemical interactions |
| 16. | Saheki Y and De Camilli P, Cold Spring Harb Perspect Biol. 2012 Sep 1;4(9):a005645. doi: 10.1101/cshperspect.a005645. |
| 17. | Tanifuji S, etal., J Biol Chem. 2013 Jun 28;288(26):19050-9. doi: 10.1074/jbc.M112.445874. Epub 2013 May 16. |
| 18. | Vaid KS, etal., J Cell Physiol. 2007 Mar;210(3):644-54. |
| 19. | Zanner R, etal., J Cell Sci. 2004 May 1;117(Pt 11):2369-76. |
References - uncurated| PubMed | 10908605 12850060 14651853 14760703 16903783 19032944 21689597 21700703 23410488 23533145 23746204 26302298 |
Comparative Map Data| Dnm3 (Rattus norvegicus - Norway rat) |
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| DNM3 (Homo sapiens - human) |
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| Dnm3 (Mus musculus - house mouse) |
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| Dnm3 (Chinchilla lanigera - long-tailed chinchilla) |
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| DNM3 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| DNM3 (Canis lupus familiaris - dog) |
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| Dnm3 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| DNM3 (Sus scrofa - pig) |
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| DNM3 (Chlorocebus sabaeus - African green monkey) |
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| Dnm3 (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Position Markers| D13Mit5 |
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| D13Mit3 |
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| BE116196 |
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| AW534587 |
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| AA800783 |
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| BQ200675 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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RNA-SEQ Expression| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 7 | 62 | 1 | 7 | 11 | ||||||||
| Low | 3 | 39 | 17 | 8 | 19 | 8 | 8 | 9 | 12 | 34 | 34 | 8 | |
| Below cutoff | 4 | 29 | 29 | 29 | 2 |
Nucleotide Sequences| RefSeq Transcripts | NM_138538 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006250141 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006250142 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598662 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598663 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017598664 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07021591 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07021592 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07021593 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07021594 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07021595 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07021596 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07072339 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076347 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076348 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076349 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076350 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076351 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076352 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076353 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076354 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076355 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076356 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076357 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076358 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076359 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076360 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076361 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076362 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076363 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076364 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076365 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076366 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076367 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01076368 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC144674 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AF201839 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473958 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| D14076 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | ENSRNOT00000067653 ⟹ ENSRNOP00000063767 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000075938 ⟹ ENSRNOP00000068044 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_138538 ⟹ NP_612547 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
GACACGGTGCCGGGACTCAGCGGTGTGAGCCCCGCGCATAATAAACCGGACAAGTGCTGCGAGGhide sequence |
| RefSeq Acc Id: | XM_006250141 ⟹ XP_006250203 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GAGCTGTCAGGAGCCTAGCAGCGGGTGGCAGGGATCGGACGACGGTGCCGGGACTCAGCGGTGThide sequence |
| RefSeq Acc Id: | XM_006250142 ⟹ XP_006250204 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GAGCTGTCAGGAGCCTAGCAGCGGGTGGCAGGGATCGGACGACGGTGCCGGGACTCAGCGGTGThide sequence |
| RefSeq Acc Id: | XM_017598662 ⟹ XP_017454151 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GAGCTGTCAGGAGCCTAGCAGCGGGTGGCAGGGATCGGACGACGGTGCCGGGACTCAGCGGTGThide sequence |
| RefSeq Acc Id: | XM_017598663 ⟹ XP_017454152 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GAGCTGTCAGGAGCCTAGCAGCGGGTGGCAGGGATCGGACGACGGTGCCGGGACTCAGCGGTGThide sequence |
| RefSeq Acc Id: | XM_017598664 ⟹ XP_017454153 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TGAGCTGTCAGGAGCCTAGCAGCGGGTGGCAGGGATCGGACGACGGTGCCGGGACTCAGCGGTGhide sequence |
Protein Sequences| Protein RefSeqs | NP_612547 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006250203 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006250204 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454151 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454152 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454153 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAF07848 | (Get FASTA) | NCBI Sequence Viewer |
| BAA03161 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM09406 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM09407 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM09408 | (Get FASTA) | NCBI Sequence Viewer | |
| Q08877 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | NP_612547 ⟸ NM_138538 |
| - UniProtKB: | Q08877 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MGNREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVhide sequence |
| RefSeq Acc Id: | XP_006250203 ⟸ XM_006250141 |
| - Peptide Label: | isoform X4 |
| - UniProtKB: | Q08877 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MGNREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVhide sequence |
| RefSeq Acc Id: | XP_006250204 ⟸ XM_006250142 |
| - Peptide Label: | isoform X5 |
| - UniProtKB: | Q08877 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MGNREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVhide sequence |
| RefSeq Acc Id: | XP_017454152 ⟸ XM_017598663 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MGNREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVhide sequence |
| RefSeq Acc Id: | XP_017454151 ⟸ XM_017598662 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MGNREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVhide sequence |
| RefSeq Acc Id: | XP_017454153 ⟸ XM_017598664 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MGNREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVhide sequence |
| RefSeq Acc Id: | ENSRNOP00000063767 ⟸ ENSRNOT00000067653 |
| RefSeq Acc Id: | ENSRNOP00000068044 ⟸ ENSRNOT00000075938 |
TranscriptomePromoters| RGD ID: | 13698944 | ||||||||
| Promoter ID: | EPDNEW_R9463 | ||||||||
| Type: | multiple initiation site | ||||||||
| Name: | AABR07021591_1 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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| RGD ID: | 13698940 | ||||||||
| Promoter ID: | EPDNEW_R9464 | ||||||||
| Type: | single initiation site | ||||||||
| Name: | Dnm3_1 | ||||||||
| Description: | dynamin 3 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Sequence Variants (Rnor 6.0)
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External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:727949 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000026490 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000063767 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOP00000068044 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| Ensembl Transcript | ENSRNOT00000067653 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOT00000075938 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| Gene3D-CATH | 2.30.29.30 | UniProtKB/Swiss-Prot |
| InterPro | Dynamin_central | UniProtKB/Swiss-Prot |
| Dynamin_GTPase | UniProtKB/Swiss-Prot | |
| Dynamin_GTPase_CS | UniProtKB/Swiss-Prot | |
| Dynamin_SF | UniProtKB/Swiss-Prot | |
| G_DYNAMIN_dom | UniProtKB/Swiss-Prot | |
| GED | UniProtKB/Swiss-Prot | |
| GED_dom | UniProtKB/Swiss-Prot | |
| P-loop_NTPase | UniProtKB/Swiss-Prot | |
| PH-like_dom_sf | UniProtKB/Swiss-Prot | |
| PH_domain | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:171574 | UniProtKB/Swiss-Prot |
| NCBI Gene | 171574 | ENTREZGENE |
| PANTHER | PTHR11566 | UniProtKB/Swiss-Prot |
| Pfam | Dynamin_M | UniProtKB/Swiss-Prot |
| Dynamin_N | UniProtKB/Swiss-Prot | |
| GED | UniProtKB/Swiss-Prot | |
| PF00169 | UniProtKB/Swiss-Prot | |
| PhenoGen | Dnm3 | PhenoGen |
| PRINTS | DYNAMIN | UniProtKB/Swiss-Prot |
| PROSITE | G_DYNAMIN_1 | UniProtKB/Swiss-Prot |
| G_DYNAMIN_2 | UniProtKB/Swiss-Prot | |
| GED | UniProtKB/Swiss-Prot | |
| PH_DOMAIN | UniProtKB/Swiss-Prot | |
| SMART | DYNc | UniProtKB/Swiss-Prot |
| GED | UniProtKB/Swiss-Prot | |
| SM00233 | UniProtKB/Swiss-Prot | |
| Superfamily-SCOP | SSF52540 | UniProtKB/Swiss-Prot |
| UniGene | Rn.11191 | ENTREZGENE |
| UniProt | DYN3_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
| UniProt Secondary | Q9QXL9 | UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2005-07-08 | Dnm3 | dynamin 3 | LOC171574 | testicular dynamin | Symbol and Name updated | 1299863 | APPROVED |
RGD Curation Notes| Note Type | Note | Reference |
|---|---|---|
| gene_expression | expressed in seminferous tubules of testis, in Sertoli cells | 1299610 |
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| More on Dnm3 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 727949 |
| Created: | 2003-11-05 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-06-09 |
| Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.
