Pigc (phosphatidylinositol glycan anchor biosynthesis, class C) - Rat Genome Database

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Gene: Pigc (phosphatidylinositol glycan anchor biosynthesis, class C) Rattus norvegicus
Analyze
Symbol: Pigc
Name: phosphatidylinositol glycan anchor biosynthesis, class C
RGD ID: 1311337
Description: Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex. Human ortholog(s) of this gene implicated in glycosylphosphatidylinositol biosynthesis defect 16. Orthologous to human PIGC (phosphatidylinositol glycan anchor biosynthesis class C); PARTICIPATES IN glycosylphosphatidylinositol anchor biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC364032; phosphatidylinositol glycan, class C; phosphatidylinositol N-acetylglucosaminyltransferase subunit C; phosphatidylinositol-glycan biosynthesis class C protein; PIG-C
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21374,343,619 - 74,346,148 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1374,296,854 - 74,346,211 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1376,913,282 - 76,915,637 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01378,220,480 - 78,222,835 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01375,480,339 - 75,482,694 (+)NCBIRnor_WKY
Rnor_6.01379,886,832 - 79,889,305 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1379,886,832 - 79,889,304 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01384,780,555 - 84,783,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41377,664,442 - 77,666,797 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11377,678,629 - 77,680,984 (+)NCBI
Celera1374,096,747 - 74,099,102 (+)NCBICelera
Cytogenetic Map13q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10944123   PMID:12477932   PMID:15489334   PMID:27694521  


Genomics

Comparative Map Data
Pigc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21374,343,619 - 74,346,148 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1374,296,854 - 74,346,211 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1376,913,282 - 76,915,637 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01378,220,480 - 78,222,835 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01375,480,339 - 75,482,694 (+)NCBIRnor_WKY
Rnor_6.01379,886,832 - 79,889,305 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1379,886,832 - 79,889,304 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01384,780,555 - 84,783,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41377,664,442 - 77,666,797 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11377,678,629 - 77,680,984 (+)NCBI
Celera1374,096,747 - 74,099,102 (+)NCBICelera
Cytogenetic Map13q22NCBI
PIGC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381172,441,457 - 172,444,069 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1172,370,189 - 172,444,086 (-)EnsemblGRCh38hg38GRCh38
GRCh371172,410,597 - 172,413,209 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361170,677,220 - 170,679,853 (-)NCBINCBI36Build 36hg18NCBI36
Build 341169,142,254 - 169,144,887NCBI
Celera1145,520,042 - 145,522,675 (-)NCBICelera
Cytogenetic Map1q24.3NCBI
HuRef1143,634,549 - 143,637,182 (-)NCBIHuRef
CHM1_11173,832,716 - 173,835,349 (-)NCBICHM1_1
T2T-CHM13v2.01171,798,151 - 171,800,763 (-)NCBIT2T-CHM13v2.0
Pigc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,796,757 - 161,801,029 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,796,755 - 161,801,004 (+)EnsemblGRCm39 Ensembl
GRCm381161,969,188 - 161,973,460 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,969,186 - 161,973,435 (+)EnsemblGRCm38mm10GRCm38
MGSCv371163,899,319 - 163,903,566 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361163,805,865 - 163,810,112 (+)NCBIMGSCv36mm8
Celera1164,424,173 - 164,428,420 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
Pigc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540612,891,187 - 12,893,935 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540612,891,187 - 12,893,935 (-)NCBIChiLan1.0ChiLan1.0
PIGC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11151,601,116 - 151,652,039 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1151,649,468 - 151,650,361 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01147,891,867 - 147,942,057 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PIGC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1726,548,894 - 26,551,702 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl726,550,524 - 26,551,417 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha726,079,654 - 26,082,476 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0726,299,949 - 26,302,764 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl726,300,015 - 26,302,740 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1726,210,541 - 26,213,364 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0726,281,110 - 26,283,930 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0726,431,378 - 26,434,197 (+)NCBIUU_Cfam_GSD_1.0
Pigc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934497,115,826 - 97,118,184 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648114,962,613 - 14,964,861 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493648114,962,572 - 14,964,929 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9114,824,802 - 114,827,413 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19114,824,795 - 114,827,731 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29126,420,136 - 126,423,071 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIGC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12556,711,459 - 56,714,109 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2556,712,941 - 56,713,834 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605558,317,307 - 58,320,157 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247719,234,242 - 9,236,987 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247719,234,218 - 9,236,991 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pigc
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:59
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000035558
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)135949252277046890Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)136906051977046890Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)137402391880753406Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat

Markers in Region
RH128185  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21374,345,930 - 74,346,126 (+)MAPPERmRatBN7.2
Rnor_6.01379,889,088 - 79,889,283NCBIRnor6.0
Rnor_5.01384,782,797 - 84,782,992UniSTSRnor5.0
RGSC_v3.41377,666,581 - 77,666,776UniSTSRGSC3.4
Celera1374,098,886 - 74,099,081UniSTS
RH 3.4 Map13452.9UniSTS
Cytogenetic Map13q22UniSTS
RH138688  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21374,345,930 - 74,346,051 (+)MAPPERmRatBN7.2
Rnor_6.01379,889,088 - 79,889,208NCBIRnor6.0
Rnor_5.01384,782,797 - 84,782,917UniSTSRnor5.0
RGSC_v3.41377,666,581 - 77,666,701UniSTSRGSC3.4
Celera1374,098,886 - 74,099,006UniSTS
RH 3.4 Map13452.7UniSTS
Cytogenetic Map13q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 30 42 35 17 35 1 4 74 29 40 11 1
Low 13 15 6 2 6 7 7 6 1 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000035558   ⟹   ENSRNOP00000035922
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1374,343,900 - 74,346,211 (+)Ensembl
Rnor_6.0 Ensembl1379,886,949 - 79,889,304 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076417   ⟹   ENSRNOP00000068091
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1374,296,854 - 74,346,211 (+)Ensembl
Rnor_6.0 Ensembl1379,886,984 - 79,888,534 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077069   ⟹   ENSRNOP00000068000
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1374,340,725 - 74,346,211 (+)Ensembl
Rnor_6.0 Ensembl1379,886,832 - 79,888,420 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105154   ⟹   ENSRNOP00000094482
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1374,343,043 - 74,346,211 (+)Ensembl
RefSeq Acc Id: NM_001012207   ⟹   NP_001012207
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21374,343,792 - 74,346,147 (+)NCBI
Rnor_6.01379,886,949 - 79,889,304 (+)NCBI
Rnor_5.01384,780,555 - 84,783,014 (+)NCBI
RGSC_v3.41377,664,442 - 77,666,797 (+)RGD
Celera1374,096,747 - 74,099,102 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250182   ⟹   XP_006250244
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21374,343,680 - 74,346,148 (+)NCBI
Rnor_6.01379,886,832 - 79,889,305 (+)NCBI
Rnor_5.01384,780,555 - 84,783,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250183   ⟹   XP_006250245
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21374,343,619 - 74,346,148 (+)NCBI
Rnor_6.01379,886,838 - 79,889,305 (+)NCBI
Rnor_5.01384,780,555 - 84,783,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769665   ⟹   XP_008767887
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21374,343,865 - 74,346,148 (+)NCBI
Rnor_6.01379,887,037 - 79,889,305 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001012207   ⟸   NM_001012207
- UniProtKB: Q5PQQ4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250245   ⟸   XM_006250183
- Peptide Label: isoform X1
- UniProtKB: Q5PQQ4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250244   ⟸   XM_006250182
- Peptide Label: isoform X1
- UniProtKB: Q5PQQ4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008767887   ⟸   XM_008769665
- Peptide Label: isoform X1
- UniProtKB: Q5PQQ4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000068000   ⟸   ENSRNOT00000077069
RefSeq Acc Id: ENSRNOP00000035922   ⟸   ENSRNOT00000035558
RefSeq Acc Id: ENSRNOP00000068091   ⟸   ENSRNOT00000076417
RefSeq Acc Id: ENSRNOP00000094482   ⟸   ENSRNOT00000105154

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQQ4-F1-model_v2 AlphaFold Q5PQQ4 1-297 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698936
Promoter ID:EPDNEW_R9461
Type:multiple initiation site
Name:Pigc_1
Description:phosphatidylinositol glycan anchor biosynthesis, class C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01379,886,936 - 79,886,996EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311337 AgrOrtholog
BioCyc Gene G2FUF-17684 BioCyc
Ensembl Genes ENSRNOG00000026497 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000035922 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000068000 ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOP00000068091 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOP00000094482 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000035558 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000076417 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOT00000077069 ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOT00000105154 ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7189037 IMAGE-MGC_LOAD
InterPro Plno_GlcNAc_GPI2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:364032 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94541 IMAGE-MGC_LOAD
NCBI Gene 364032 ENTREZGENE
PANTHER PTHR12982 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GPI2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pigc PhenoGen
PIRSF GPI2 UniProtKB/Swiss-Prot
UniProt A0A096MJ59_RAT UniProtKB/TrEMBL
  A0A096MJD7_RAT UniProtKB/TrEMBL
  PIGC_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Pigc  phosphatidylinositol glycan anchor biosynthesis, class C  Pigc  phosphatidylinositol glycan, class C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Pigc  phosphatidylinositol glycan, class C  Pigc_predicted  phosphatidylinositol glycan, class C (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Pigc_predicted  phosphatidylinositol glycan, class C (predicted)      Symbol and Name status set to approved 70820 APPROVED