Pex19 (peroxisomal biogenesis factor 19) - Rat Genome Database

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Gene: Pex19 (peroxisomal biogenesis factor 19) Rattus norvegicus
Analyze
Symbol: Pex19
Name: peroxisomal biogenesis factor 19
RGD ID: 1306913
Description: Predicted to enable ATPase binding activity; peroxisome membrane class-1 targeting sequence binding activity; and protein carrier chaperone. Predicted to be involved in chaperone-mediated protein folding; peroxisome organization; and protein stabilization. Located in brush border membrane and peroxisome. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 12A. Orthologous to human PEX19 (peroxisomal biogenesis factor 19); INTERACTS WITH (+)-schisandrin B; 2,6-dinitrotoluene; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100360976; LOC100911356; LOC289233; LOC307259; peroxin-19; peroxisomal biogenesis factor 19-like; peroxisomal farnesylated protein; peroxisome biogenesis factor 19; PxF; similar to Peroxisomal biogenesis factor 19 (Peroxin-19) (Peroxisomal farnesylated protein)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81387,124,654 - 87,141,170 (+)NCBIGRCr8
mRatBN7.21384,592,277 - 84,608,793 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,592,312 - 84,608,608 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1387,095,642 - 87,112,114 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,495,900 - 88,512,372 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,680,449 - 85,697,145 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,514,324 - 90,530,825 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1871,607,340 - 71,614,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,514,336 - 90,530,349 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01395,035,461 - 95,051,834 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41388,122,462 - 88,139,003 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1384,203,953 - 84,220,188 (+)NCBICelera
Cytogenetic Map13q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
9-cis-retinoic acid  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
amiodarone  (EXP,ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bexarotene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
clofibrate  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
diallyl trisulfide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
dorsomorphin  (ISO)
ethanol  (ISO)
fenthion  (ISO)
finasteride  (EXP)
fipronil  (EXP)
folic acid  (ISO)
FR900359  (ISO)
glafenine  (EXP)
indometacin  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
methimazole  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
Muraglitazar  (EXP)
omeprazole  (EXP)
ozone  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
pirinixic acid  (EXP,ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sulfadimethoxine  (EXP)
Tesaglitazar  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
trichostatin A  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Two different targeting signals direct human peroxisomal membrane protein 22 to peroxisomes. Brosius U, etal., J Biol Chem. 2002 Jan 4;277(1):774-84. Epub 2001 Oct 5.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Interaction of a farnesylated protein with renal type IIa Na/Pi co-transporter in response to parathyroid hormone and dietary phosphate. Ito M, etal., Biochem J. 2004 Feb 1;377(Pt 3):607-16.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. PEX19 binds multiple peroxisomal membrane proteins, is predominantly cytoplasmic, and is required for peroxisome membrane synthesis. Sacksteder KA, etal., J Cell Biol. 2000 Mar 6;148(5):931-44.
Additional References at PubMed
PMID:8889548   PMID:9339377   PMID:10051604   PMID:11402059   PMID:11453642   PMID:11883941   PMID:12924628   PMID:14709540   PMID:15632090   PMID:15713480   PMID:16344115   PMID:16763195  
PMID:18174172   PMID:18782765   PMID:19114594   PMID:19197237   PMID:19715730   PMID:21525035   PMID:28391327  


Genomics

Comparative Map Data
Pex19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81387,124,654 - 87,141,170 (+)NCBIGRCr8
mRatBN7.21384,592,277 - 84,608,793 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,592,312 - 84,608,608 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1387,095,642 - 87,112,114 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,495,900 - 88,512,372 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,680,449 - 85,697,145 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,514,324 - 90,530,825 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1871,607,340 - 71,614,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,514,336 - 90,530,349 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01395,035,461 - 95,051,834 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41388,122,462 - 88,139,003 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1384,203,953 - 84,220,188 (+)NCBICelera
Cytogenetic Map13q24NCBI
PEX19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,276,807 - 160,285,151 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,276,807 - 160,286,348 (-)EnsemblGRCh38hg38GRCh38
GRCh371160,246,597 - 160,254,941 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,513,226 - 158,521,555 (-)NCBINCBI36Build 36hg18NCBI36
Build 341157,059,674 - 157,068,004NCBI
Celera1133,315,362 - 133,323,704 (-)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1131,603,239 - 131,611,581 (-)NCBIHuRef
CHM1_11161,641,944 - 161,650,286 (-)NCBICHM1_1
T2T-CHM13v2.01159,413,883 - 159,422,227 (-)NCBIT2T-CHM13v2.0
Pex19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,954,322 - 171,964,064 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,954,322 - 171,964,060 (+)EnsemblGRCm39 Ensembl
GRCm381172,126,755 - 172,136,497 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,126,755 - 172,136,493 (+)EnsemblGRCm38mm10GRCm38
MGSCv371174,056,886 - 174,066,628 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,963,447 - 173,972,455 (+)NCBIMGSCv36mm8
Celera1174,981,963 - 174,991,751 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.54NCBI
Pex19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,049,043 - 12,057,364 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546812,049,043 - 12,057,751 (-)NCBIChiLan1.0ChiLan1.0
PEX19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,566,863 - 89,573,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1189,306,840 - 89,315,224 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,630,788 - 135,639,126 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11139,551,681 - 139,559,957 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1139,551,681 - 139,559,954 (-)Ensemblpanpan1.1panPan2
PEX19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,939,054 - 21,945,281 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,939,018 - 21,944,602 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3822,012,447 - 22,018,702 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03822,055,478 - 22,061,737 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3822,055,526 - 22,067,139 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13821,960,482 - 21,966,737 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03822,356,710 - 22,362,956 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,766,324 - 22,772,586 (+)NCBIUU_Cfam_GSD_1.0
Pex19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,395,854 - 6,403,436 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936740351,045 - 359,033 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936740351,089 - 357,657 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl490,195,852 - 90,205,215 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1490,196,986 - 90,213,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,087,493 - 98,095,580 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PEX19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1203,663,375 - 3,672,113 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl203,663,001 - 3,669,404 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660382,721,016 - 2,729,663 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pex19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624794975,889 - 982,721 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624794976,885 - 982,723 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:300
Count of miRNA genes:119
Interacting mature miRNAs:127
Transcripts:ENSRNOT00000032563, ENSRNOT00000074527
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)136242459288113509Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)137161080489333251Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134760142692601426Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)137161080489333251Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)137161080489333251Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
RH128723  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01870,740,618 - 70,740,811NCBIRnor5.0
Rnor_5.01870,864,224 - 70,864,417NCBIRnor5.0
Rnor_5.01395,044,254 - 95,044,447NCBIRnor5.0
RGSC_v3.41872,488,777 - 72,488,969UniSTSRGSC3.4
RGSC_v3.41388,131,422 - 88,131,614UniSTSRGSC3.4
Celera1867,891,233 - 67,891,425UniSTS
Celera1384,212,607 - 84,212,799UniSTS
Cytogenetic Map13q24UniSTS
RH135139  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01870,740,228 - 70,740,447NCBIRnor5.0
Rnor_5.01870,863,834 - 70,864,053NCBIRnor5.0
Rnor_5.01395,044,618 - 95,044,837NCBIRnor5.0
RGSC_v3.41872,488,387 - 72,488,605UniSTSRGSC3.4
RGSC_v3.41388,131,786 - 88,132,004UniSTSRGSC3.4
Celera1867,891,597 - 67,891,815UniSTS
Celera1384,212,971 - 84,213,189UniSTS
Cytogenetic Map13q24UniSTS
PMC26746P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21869,180,042 - 69,180,159 (+)MAPPERmRatBN7.2
mRatBN7.21384,599,422 - 84,600,242 (-)MAPPERmRatBN7.2
Rnor_6.01871,732,305 - 71,732,421NCBIRnor6.0
Rnor_6.01871,607,594 - 71,608,413NCBIRnor6.0
Rnor_5.01870,865,219 - 70,865,335UniSTSRnor5.0
Rnor_5.01870,741,781 - 70,742,600UniSTSRnor5.0
RGSC_v3.41872,489,771 - 72,489,887UniSTSRGSC3.4
Cytogenetic Map13q24UniSTS
Cytogenetic Map18q12.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 14 46 94 60 67 44 22 44 182 82 86 42 54 23

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001134777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI712677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE108398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF543157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ782704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB718412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK600534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK838542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO573662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: NM_001107375   ⟹   NP_001100845
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81387,124,698 - 87,134,257 (+)NCBI
mRatBN7.21384,592,321 - 84,601,880 (+)NCBI
Rnor_6.01390,514,336 - 90,523,912 (+)NCBI
Rnor_5.01395,035,461 - 95,051,834 (+)NCBI
RGSC_v3.41388,122,462 - 88,139,003 (+)RGD
Celera1384,203,953 - 84,213,275 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001134777   ⟹   NP_001128249
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81387,124,698 - 87,141,170 (+)NCBI
mRatBN7.21384,592,321 - 84,608,793 (+)NCBI
Rnor_6.01390,514,336 - 90,530,825 (+)NCBI
Rnor_5.01395,035,461 - 95,051,834 (+)NCBI
RGSC_v3.41388,122,462 - 88,139,003 (+)RGD
Celera1384,203,953 - 84,220,188 (+)RGD
Sequence:
RefSeq Acc Id: XM_039090518   ⟹   XP_038946446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81387,124,654 - 87,134,257 (+)NCBI
mRatBN7.21384,592,277 - 84,601,880 (+)NCBI
RefSeq Acc Id: NP_001128249   ⟸   NM_001134777
- Peptide Label: isoform 2
- UniProtKB: A6JG28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001100845   ⟸   NM_001107375
- Peptide Label: isoform 1
- UniProtKB: Q9QYU1 (UniProtKB/Swiss-Prot),   A6JG25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038946446   ⟸   XM_039090518
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A2A5 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QYU1-F1-model_v2 AlphaFold Q9QYU1 1-299 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699019
Promoter ID:EPDNEW_R9544
Type:multiple initiation site
Name:LOC102548286_1
Description:peroxisomal biogenesis factor 19-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01390,514,350 - 90,514,410EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306913 AgrOrtholog
BioCyc Gene G2FUF-17331 BioCyc
Ensembl Genes ENSRNOG00000022572 Ensembl
  ENSRNOG00000057116 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000088996.2 UniProtKB/TrEMBL
  ENSRNOT00000101318.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.900 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Pex19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pex19_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:289233 UniProtKB/TrEMBL
NCBI Gene Pex19 ENTREZGENE
PANTHER PEROXISOMAL BIOGENESIS FACTOR 19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12774 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pex19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pex19 PhenoGen
RatGTEx ENSRNOG00000022572 RatGTEx
  ENSRNOG00000057116 RatGTEx
UniProt A0A0G2K2T9_RAT UniProtKB/TrEMBL
  A0A8I6A2A5 ENTREZGENE, UniProtKB/TrEMBL
  A6JG25 ENTREZGENE, UniProtKB/TrEMBL
  A6JG28 ENTREZGENE, UniProtKB/TrEMBL
  PEX19_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Pex19  peroxisomal biogenesis factor 19  LOC100911356  peroxisomal biogenesis factor 19-like  Data merged from RGD:6493558 737654 PROVISIONAL
2014-07-10 Pex19  peroxisomal biogenesis factor 19  LOC100360976  peroxisomal biogenesis factor 19-like  Data merged from RGD:2321084 737654 APPROVED
2012-07-05 LOC100911356  peroxisomal biogenesis factor 19-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-05 LOC100360976  peroxisomal biogenesis factor 19-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-09-22 Pex19  peroxisomal biogenesis factor 19  LOC289233  similar to Peroxisomal biogenesis factor 19 (Peroxin-19) (Peroxisomal farnesylated protein)  Data merged from RGD:1590927 737654 APPROVED
2008-09-03 Pex19  peroxisomal biogenesis factor 19  Pex19  peroxisome biogenesis factor 19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC289233  similar to Peroxisomal biogenesis factor 19 (Peroxin-19) (Peroxisomal farnesylated protein)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Pex19  peroxisome biogenesis factor 19  Pex19_predicted  peroxisome biogenesis factor 19 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Pex19_predicted  peroxisome biogenesis factor 19 (predicted)      Symbol and Name status set to approved 70820 APPROVED