PEX19 (peroxisomal biogenesis factor 19)

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Gene: PEX19 (peroxisomal biogenesis factor 19) Canis lupus familiaris

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Symbol:

PEX19

Name:

peroxisomal biogenesis factor 19

RGD ID:

12154022

Description:

ENCODES a protein that exhibits ATPase binding (inferred); peroxisome membrane class-1 targeting sequence binding (inferred); protein carrier chaperone (inferred); INVOLVED IN peroxisome membrane biogenesis (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); familial hemiplegic migraine (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN brush border membrane (ortholog); membrane (ortholog); nucleus (ortholog); INTERACTS WITH mocetinostat

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	21,939,054 - 21,945,281 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	21,939,018 - 21,944,602 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	22,012,447 - 22,018,702 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	22,055,478 - 22,061,737 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	22,055,526 - 22,067,139 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	21,960,482 - 21,966,737 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	22,356,710 - 22,362,956 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	22,766,324 - 22,772,586 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune interstitial lung, joint, and kidney disease (ISO)

familial hemiplegic migraine (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

parathyroid carcinoma (ISO)

peroxisomal biogenesis disorder (ISO)

peroxisome biogenesis disorder 12A (ISO)

peroxisome biogenesis disorder 1A (ISO)

Zellweger syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

mocetinostat (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chaperone-mediated protein folding (IEA)

establishment of protein localization to peroxisome (IEA)

peroxisome fission (IEA)

peroxisome membrane biogenesis (ISO)

peroxisome organization (IEA)

protein import into peroxisome membrane (IEA)

protein stabilization (IEA)

protein targeting to peroxisome (IEA)

Cellular Component

brush border membrane (ISO)

cytoplasm (IEA)

cytosol (IEA)

membrane (ISO)

nucleoplasm (IEA)

nucleus (ISO)

peroxisomal membrane (IEA)

peroxisome (IEA)

protein-containing complex (IEA)

Molecular Function

ATPase binding (IEA)

peroxisome membrane class-1 targeting sequence binding (IEA)

protein binding (ISO)

protein carrier chaperone (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PEX19
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	21,939,054 - 21,945,281 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	21,939,018 - 21,944,602 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	22,012,447 - 22,018,702 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	22,055,478 - 22,061,737 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	22,055,526 - 22,067,139 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	21,960,482 - 21,966,737 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	22,356,710 - 22,362,956 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	22,766,324 - 22,772,586 (+)	NCBI		UU_Cfam_GSD_1.0

PEX19
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	160,276,807 - 160,285,151 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	160,276,807 - 160,286,348 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	160,246,597 - 160,254,941 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	158,513,226 - 158,521,555 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	157,059,674 - 157,068,004	NCBI
Celera	1	133,315,362 - 133,323,704 (-)	NCBI		Celera
Cytogenetic Map	1	q23.2	NCBI
HuRef	1	131,603,239 - 131,611,581 (-)	NCBI		HuRef
CHM1_1	1	161,641,944 - 161,650,286 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	159,413,883 - 159,422,227 (-)	NCBI		T2T-CHM13v2.0

Pex19
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	171,954,322 - 171,964,064 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	171,954,322 - 171,964,060 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	172,126,755 - 172,136,497 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	172,126,755 - 172,136,493 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	174,056,886 - 174,066,628 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	173,963,447 - 173,972,455 (+)	NCBI		MGSCv36	mm8
Celera	1	174,981,963 - 174,991,751 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	79.54	NCBI

Pex19
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	87,124,654 - 87,141,170 (+)	NCBI		GRCr8
mRatBN7.2	13	84,592,277 - 84,608,793 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	84,592,312 - 84,608,608 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	87,095,642 - 87,112,114 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	88,495,900 - 88,512,372 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	85,680,449 - 85,697,145 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	90,514,324 - 90,530,825 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	71,607,340 - 71,614,980 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	13	90,514,336 - 90,530,349 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	95,035,461 - 95,051,834 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	88,122,462 - 88,139,003 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	84,203,953 - 84,220,188 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

Pex19
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	12,049,043 - 12,057,364 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	12,049,043 - 12,057,751 (-)	NCBI	ChiLan1.0	ChiLan1.0

PEX19
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	89,566,863 - 89,573,569 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	89,306,840 - 89,315,224 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	135,630,788 - 135,639,126 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	139,551,681 - 139,559,957 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	139,551,681 - 139,559,954 (-)	Ensembl	panpan1.1		panPan2

Pex19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	6,395,854 - 6,403,436 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936740	351,045 - 359,033 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936740	351,089 - 357,657 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PEX19
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	90,195,852 - 90,205,215 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	90,196,986 - 90,213,308 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	98,087,493 - 98,095,580 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PEX19
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	3,663,375 - 3,672,113 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	3,663,001 - 3,669,404 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	2,721,016 - 2,729,663 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pex19
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	975,889 - 982,721 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	976,885 - 982,723 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PEX19
83 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022415349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038448682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038448683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038522571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038522572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038586351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038586352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038650771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038650772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_536130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000019883 ⟹ ENSCAFP00000018441

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	38	21,939,018 - 21,944,602 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000083182 ⟹ ENSCAFP00000060838

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	38	21,939,018 - 21,944,602 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845054333 ⟹ ENSCAFP00845042692

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	38	22,055,526 - 22,067,139 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845054337 ⟹ ENSCAFP00845042695

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	38	22,055,526 - 22,062,761 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845054348 ⟹ ENSCAFP00845042702

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	38	22,055,526 - 22,061,729 (+)	Ensembl

RefSeq Acc Id:

XM_022415349 ⟹ XP_022271057

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	38	21,939,097 - 21,945,281 (+)	NCBI
Dog10K_Boxer_Tasha	38	22,012,472 - 22,018,702 (+)	NCBI

Sequence:

show sequence

AGGGCTGTGCTGCCGGTGCCGACGCGGACCGGGAACTGGAAGAGCTCCTGGAAATCACAGAGAC
GTGGGCAGACAGAAGGACGGTCAGACACGGTGAGGAGCGCCAGGTGGCCCTGTGCATTGGCACA
TTCTCTGCAGGGGCGAGCCGGCTGCGGGGAACTCCGGGAGCTCCGCCCCCCTCCCCGGCAGGGC
TGAGGCAGGGCTGAGTCGGAGGGTAAGAGGAGAGACCTCAGTGCCCTCCGGGGAGTCCGGTGTG
CTAGCCCTCAAGTCTGTGCCACACCAGGACCCAGGGGACGCCGGGTGGAACATCATGTGGCTGC
CGCTTCCTTGCCAAAAATCATTCTCTGAAGGTCTCCAGAGTGCTCTTGATGATTTCGATAAGGC
CAAACCCTCCCCAGCACCCCCTCCTACCACCACGGCCCCTGATGCTTCGGGGGCCCAGAAGAGA
TCGCCAGGAGACACTGCCAAAGATGCCCTCTTCGCCTCCCAAGAGAAGTTTTTCCAGGAACTGT
TCGACAGCGAGCTGGCTTCCCAAGCCACTGCAGAGTTCGAGAAGGCAATGAAGGAGTTGGCTGA
GGAAGAGCCCCACCTGGTGGAGCAGTTCCAGAAGCTCTCAGAGGCTGCAGGGAGAGTGGGCAGT
GATGCGACATCCCAACAAGAATTTACGTCTTGCCTGAAGGAGACACTAAGTGGACTTGCCAAAA
ATGCTACTGATCTTCAGAACTCAGGCATGTCAGAGGAGGAACTGACCAAGGCCATGGAAGGGCT
GGGCATGGACGAAGGGGATGGGGAAGGGAACATTCTCCCCATTATGCAGAGTATCATGCAGAAC
CTACTGTCCAAGGATGTGCTGTACCCGTCACTGAAGGAGATTACAGAAAAGTATCCAGAATGGT
TGCAGAGTCACCGGGAATCTCTTCCTCCAGAACAGTTTGAAAAATATCAGGAGCAACATAGCGT
CATGGGCAAGATATGTGAACAGTTTGAGGCAGAGACCCCCACAGACAGTGAGGCCACTCAGAAG
GCTCGTTTTGAGTTAGTGCTGGATCTTATGCAGCAGCTACAGGATTTGGGCCATCCTCCAAAAG
AGCTGGCTGGGGAGATGCCTCCTGGCCTCAACTTTGACCTGGACGCCCTCAATCTGTCAGGCCC
ACCAGGTGCCAATGGCGAACAGTGTCTGATCATGTGAAACACAACACGTGTTTTGTCCCTGATT
CCCAGCCCTGGGGAACGTCTGGAGTCAGCAGGACCACTGGGACCTGAGGCTGGAGTGTCATCTG
CGAGAGCAGTCTGCCCTCTGCCCTCTGTCATCCCAGCTGAGATCGTGCCATACCAGCTGAGGCT
TTTACTCTCTCTTTCTAGTAATAAGGCCTATTGTGCAGGCCATTTCTGTGAGCCCCATCCATGT
GGTTTCTGCTGCTAGCAAAGGCCCAGCTACCTACCAGATGAAGGAAGGCACCCCTTGTGGGGCA
TGCACTTTCTTCCCTCCCAAATAATGTTATATATGGCCACACAAATGTTCACTTTTGCATCCAG
GGTCTTCGTGCCTTGTCTCTACTCCCTCTTGGACCTGGGGAGCAGAGACAGAGTCCTGGGACTC
TGTATTTCTCTAGTTCTTTGGGGCAGGGCCTTTGGGAATGAATGGGGAGAAACTTCACCTGGGC
TGGGGCTCTAGGTCTGTCACCATTCCCTCTTGCCTTCGGACAGACCGTTGTGAACTCTGTGAAG
GAAACGGAGGTGGGGGCTTTTGCATCTCATCACAGTAGGACTGAAAGAGAAGCCCTGGGATTCT
CCTCTCTCTGGGTGCTGAGCCTTCAGCTCCTTGTTCCAGCCCGAGAACTCAAGGTGCTACCTTG
GTTCTTTGTACAATGCTGTGTGATCTGGGTGAAACCAGCCCTTGACCTTCCTGCGCCCCTGCCT
CCTCATCTTCTCTCTTTTTAAATACCTGTTTATTCCAACTCTTCTCTGAACCCAAGCTGTGACA
AAGAAGGGCCATCCACCACTCTCATTGGCCCCTCTCCCTGGAAAACATATAATTACAGTGTCAG
GTCTAGGAAATGAATGACTGTTCTTCCCCAGATCCAGGTATGTTCTGGCTTATTTGAGACCTCT
GATTTCTTTGAATCCTGTCCCTTGATTAAGCAAGTGACTTGGAACGGGAGTGGGGTGCAGCCTG
GGTCCTTTTTCTTGACTAATAAATATTCTGATTGAA

hide sequence

RefSeq Acc Id:

XM_038448682 ⟹ XP_038304610

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	38	22,055,478 - 22,061,737 (+)	NCBI

RefSeq Acc Id:

XM_038448683 ⟹ XP_038304611

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	38	22,055,504 - 22,061,737 (+)	NCBI

RefSeq Acc Id:

XM_038522571 ⟹ XP_038378499

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	38	21,960,482 - 21,966,737 (+)	NCBI

RefSeq Acc Id:

XM_038522572 ⟹ XP_038378500

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	38	21,960,507 - 21,966,737 (+)	NCBI

RefSeq Acc Id:

XM_038586351 ⟹ XP_038442279

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	38	22,766,324 - 22,772,586 (+)	NCBI

RefSeq Acc Id:

XM_038586352 ⟹ XP_038442280

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	38	22,766,349 - 22,772,586 (+)	NCBI

RefSeq Acc Id:

XM_038650771 ⟹ XP_038506699

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	38	22,356,710 - 22,362,956 (+)	NCBI

RefSeq Acc Id:

XM_038650772 ⟹ XP_038506700

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	38	22,356,735 - 22,362,956 (+)	NCBI

RefSeq Acc Id:

XM_536130 ⟹ XP_536130

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	38	21,939,054 - 21,945,281 (+)	NCBI
Dog10K_Boxer_Tasha	38	22,012,447 - 22,018,702 (+)	NCBI

Sequence:

show sequence

CCCCTACGGCAAGTCGGACAGAGCAAGATGGCCGCCGCCGAGGAGGGCTGTGCTGCCGGTGCCG
ACGCGGACCGGGAACTGGAAGAGCTCCTGGAAAGTGCTCTTGATGATTTCGATAAGGCCAAACC
CTCCCCAGCACCCCCTCCTACCACCACGGCCCCTGATGCTTCGGGGGCCCAGAAGAGATCGCCA
GGAGACACTGCCAAAGATGCCCTCTTCGCCTCCCAAGAGAAGTTTTTCCAGGAACTGTTCGACA
GCGAGCTGGCTTCCCAAGCCACTGCAGAGTTCGAGAAGGCAATGAAGGAGTTGGCTGAGGAAGA
GCCCCACCTGGTGGAGCAGTTCCAGAAGCTCTCAGAGGCTGCAGGGAGAGTGGGCAGTGATGCG
ACATCCCAACAAGAATTTACGTCTTGCCTGAAGGAGACACTAAGTGGACTTGCCAAAAATGCTA
CTGATCTTCAGAACTCAGGCATGTCAGAGGAGGAACTGACCAAGGCCATGGAAGGGCTGGGCAT
GGACGAAGGGGATGGGGAAGGGAACATTCTCCCCATTATGCAGAGTATCATGCAGAACCTACTG
TCCAAGGATGTGCTGTACCCGTCACTGAAGGAGATTACAGAAAAGTATCCAGAATGGTTGCAGA
GTCACCGGGAATCTCTTCCTCCAGAACAGTTTGAAAAATATCAGGAGCAACATAGCGTCATGGG
CAAGATATGTGAACAGTTTGAGGCAGAGACCCCCACAGACAGTGAGGCCACTCAGAAGGCTCGT
TTTGAGTTAGTGCTGGATCTTATGCAGCAGCTACAGGATTTGGGCCATCCTCCAAAAGAGCTGG
CTGGGGAGATGCCTCCTGGCCTCAACTTTGACCTGGACGCCCTCAATCTGTCAGGCCCACCAGG
TGCCAATGGCGAACAGTGTCTGATCATGTGAAACACAACACGTGTTTTGTCCCTGATTCCCAGC
CCTGGGGAACGTCTGGAGTCAGCAGGACCACTGGGACCTGAGGCTGGAGTGTCATCTGCGAGAG
CAGTCTGCCCTCTGCCCTCTGTCATCCCAGCTGAGATCGTGCCATACCAGCTGAGGCTTTTACT
CTCTCTTTCTAGTAATAAGGCCTATTGTGCAGGCCATTTCTGTGAGCCCCATCCATGTGGTTTC
TGCTGCTAGCAAAGGCCCAGCTACCTACCAGATGAAGGAAGGCACCCCTTGTGGGGCATGCACT
TTCTTCCCTCCCAAATAATGTTATATATGGCCACACAAATGTTCACTTTTGCATCCAGGGTCTT
CGTGCCTTGTCTCTACTCCCTCTTGGACCTGGGGAGCAGAGACAGAGTCCTGGGACTCTGTATT
TCTCTAGTTCTTTGGGGCAGGGCCTTTGGGAATGAATGGGGAGAAACTTCACCTGGGCTGGGGC
TCTAGGTCTGTCACCATTCCCTCTTGCCTTCGGACAGACCGTTGTGAACTCTGTGAAGGAAACG
GAGGTGGGGGCTTTTGCATCTCATCACAGTAGGACTGAAAGAGAAGCCCTGGGATTCTCCTCTC
TCTGGGTGCTGAGCCTTCAGCTCCTTGTTCCAGCCCGAGAACTCAAGGTGCTACCTTGGTTCTT
TGTACAATGCTGTGTGATCTGGGTGAAACCAGCCCTTGACCTTCCTGCGCCCCTGCCTCCTCAT
CTTCTCTCTTTTTAAATACCTGTTTATTCCAACTCTTCTCTGAACCCAAGCTGTGACAAAGAAG
GGCCATCCACCACTCTCATTGGCCCCTCTCCCTGGAAAACATATAATTACAGTGTCAGGTCTAG
GAAATGAATGACTGTTCTTCCCCAGATCCAGGTATGTTCTGGCTTATTTGAGACCTCTGATTTC
TTTGAATCCTGTCCCTTGATTAAGCAAGTGACTTGGAACGGGAGTGGGGTGCAGCCTGGGTCCT
TTTTCTTGACTAATAAATATTCTGATTGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_022271057	(Get FASTA)	NCBI Sequence Viewer
	XP_038304610	(Get FASTA)	NCBI Sequence Viewer
	XP_038304611	(Get FASTA)	NCBI Sequence Viewer
	XP_038378499	(Get FASTA)	NCBI Sequence Viewer
	XP_038378500	(Get FASTA)	NCBI Sequence Viewer
	XP_038442279	(Get FASTA)	NCBI Sequence Viewer
	XP_038442280	(Get FASTA)	NCBI Sequence Viewer
	XP_038506699	(Get FASTA)	NCBI Sequence Viewer
	XP_038506700	(Get FASTA)	NCBI Sequence Viewer
	XP_536130	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000018441.5
	ENSCAFP00000060838.2
	ENSCAFP00000070279.1
	ENSCAFP00030026770.1
	ENSCAFP00040026581.1
	ENSCAFP00845042692.1
	ENSCAFP00845042695
	ENSCAFP00845042695.1
	ENSCAFP00845042702
	ENSCAFP00845042702.1

RefSeq Acc Id:	XP_536130 ⟸ XM_536130
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0SWZ8 (UniProtKB/TrEMBL), A0A8C0L6M6 (UniProtKB/TrEMBL), A0A8I3S7P7 (UniProtKB/TrEMBL), A0A8I3QNW4 (UniProtKB/TrEMBL), A0A8P0PK49 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAEEGCAAGADADRELEELLESALDDFDKAKPSPAPPPTTTAPDASGAQKRSPGDTAKDALF ASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDATSQQEFTSC LKETLSGLAKNATDLQNSGMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYPSL KEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMGKICEQFEAETPTDSEATQKARFELVLDLMQ QLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGANGEQCLIM hide sequence

RefSeq Acc Id:	XP_022271057 ⟸ XM_022415349
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0L1D2 (UniProtKB/TrEMBL), A0A8I3Q4P4 (UniProtKB/TrEMBL), A0A8I3QNW4 (UniProtKB/TrEMBL), A0A8P0PK49 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWLPLPCQKSFSEGLQSALDDFDKAKPSPAPPPTTTAPDASGAQKRSPGDTAKDALFASQEKFF QELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDATSQQEFTSCLKETLSG LAKNATDLQNSGMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKY PEWLQSHRESLPPEQFEKYQEQHSVMGKICEQFEAETPTDSEATQKARFELVLDLMQQLQDLGH PPKELAGEMPPGLNFDLDALNLSGPPGANGEQCLIM hide sequence

Ensembl Acc Id:

ENSCAFP00000018441 ⟸ ENSCAFT00000019883

Ensembl Acc Id:

ENSCAFP00000060838 ⟸ ENSCAFT00000083182

RefSeq Acc Id:	XP_038378499 ⟸ XM_038522571
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038378500 ⟸ XM_038522572
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038506699 ⟸ XM_038650771
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038506700 ⟸ XM_038650772
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038304610 ⟸ XM_038448682
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0SWZ8 (UniProtKB/TrEMBL), A0A8C0L6M6 (UniProtKB/TrEMBL), A0A8I3S7P7 (UniProtKB/TrEMBL), A0A8I3QNW4 (UniProtKB/TrEMBL), A0A8P0PK49 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038304611 ⟸ XM_038448683
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0L1D2 (UniProtKB/TrEMBL), A0A8I3Q4P4 (UniProtKB/TrEMBL), A0A8I3QNW4 (UniProtKB/TrEMBL), A0A8P0PK49 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038442279 ⟸ XM_038586351
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0L6M6 (UniProtKB/TrEMBL), A0A8C0SWZ8 (UniProtKB/TrEMBL), A0A8I3QNW4 (UniProtKB/TrEMBL), A0A8I3S7P7 (UniProtKB/TrEMBL), A0A8P0PK49 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038442280 ⟸ XM_038586352
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0L1D2 (UniProtKB/TrEMBL), A0A8I3Q4P4 (UniProtKB/TrEMBL), A0A8I3QNW4 (UniProtKB/TrEMBL), A0A8P0PK49 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845042702 ⟸ ENSCAFT00845054348

Ensembl Acc Id:

ENSCAFP00845042695 ⟸ ENSCAFT00845054337

Ensembl Acc Id:

ENSCAFP00845042692 ⟸ ENSCAFT00845054333

Promoters

RGD ID:

13689229

Promoter ID:

EPDNEW_C7296

Type:

single initiation site

Name:

PEX19_1

Description:

peroxisomal biogenesis factor 19

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	38	21,939,073 - 21,939,133	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000012510	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030016645	UniProtKB/TrEMBL
	ENSCAFG00040016530	UniProtKB/TrEMBL
	ENSCAFG00845030621	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000019883.6	UniProtKB/TrEMBL
	ENSCAFT00000083182.2	UniProtKB/TrEMBL
	ENSCAFT00000095594.1	UniProtKB/TrEMBL
	ENSCAFT00030030688.1	UniProtKB/TrEMBL
	ENSCAFT00040030583.1	UniProtKB/TrEMBL
	ENSCAFT00845054333.1	UniProtKB/TrEMBL
	ENSCAFT00845054337	ENTREZGENE
	ENSCAFT00845054337.1	UniProtKB/TrEMBL
	ENSCAFT00845054348	ENTREZGENE
	ENSCAFT00845054348.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.120.900	UniProtKB/TrEMBL
InterPro	Pex19	UniProtKB/TrEMBL
	Pex19_C_sf	UniProtKB/TrEMBL
NCBI Gene	PEX19	ENTREZGENE
PANTHER	PEROXISOMAL BIOGENESIS FACTOR 19	UniProtKB/TrEMBL
	PTHR12774	UniProtKB/TrEMBL
Pfam	Pex19	UniProtKB/TrEMBL
UniProt	A0A8C0L1D2	ENTREZGENE
	A0A8C0L6M6	ENTREZGENE
	A0A8C0SWZ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3Q4P4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3QNW4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3S7P7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NEG0_CANLF	UniProtKB/TrEMBL
	A0A8P0P9V4_CANLF	UniProtKB/TrEMBL
	A0A8P0PK49	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:44432	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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