PEX19 (peroxisomal biogenesis factor 19) - Rat Genome Database

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Gene: PEX19 (peroxisomal biogenesis factor 19) Chlorocebus sabaeus
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Symbol: PEX19
Name: peroxisomal biogenesis factor 19
RGD ID: 18375990
Description: ENCODES a protein that exhibits ATPase binding (ortholog); peroxisome membrane class-1 targeting sequence binding (ortholog); protein carrier chaperone (ortholog); INVOLVED IN chaperone-mediated protein folding (ortholog); establishment of protein localization to peroxisome (ortholog); peroxisome fission (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); familial hemiplegic migraine (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN brush border membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1203,663,375 - 3,672,113 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl203,663,001 - 3,669,404 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660382,721,016 - 2,729,663 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PEX19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1203,663,375 - 3,672,113 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl203,663,001 - 3,669,404 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660382,721,016 - 2,729,663 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PEX19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,276,807 - 160,285,151 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,276,807 - 160,286,348 (-)EnsemblGRCh38hg38GRCh38
GRCh371160,246,597 - 160,254,941 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,513,226 - 158,521,555 (-)NCBINCBI36Build 36hg18NCBI36
Build 341157,059,674 - 157,068,004NCBI
Celera1133,315,362 - 133,323,704 (-)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1131,603,239 - 131,611,581 (-)NCBIHuRef
CHM1_11161,641,944 - 161,650,286 (-)NCBICHM1_1
T2T-CHM13v2.01159,413,883 - 159,422,227 (-)NCBIT2T-CHM13v2.0
Pex19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,954,322 - 171,964,064 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,954,322 - 171,964,060 (+)EnsemblGRCm39 Ensembl
GRCm381172,126,755 - 172,136,497 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,126,755 - 172,136,493 (+)EnsemblGRCm38mm10GRCm38
MGSCv371174,056,886 - 174,066,628 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,963,447 - 173,972,455 (+)NCBIMGSCv36mm8
Celera1174,981,963 - 174,991,751 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.54NCBI
Pex19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81387,124,654 - 87,141,170 (+)NCBIGRCr8
mRatBN7.21384,592,277 - 84,608,793 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,592,312 - 84,608,608 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1387,095,642 - 87,112,114 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,495,900 - 88,512,372 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,680,449 - 85,697,145 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,514,324 - 90,530,825 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1871,607,340 - 71,614,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,514,336 - 90,530,349 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01395,035,461 - 95,051,834 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41388,122,462 - 88,139,003 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1384,203,953 - 84,220,188 (+)NCBICelera
Cytogenetic Map13q24NCBI
Pex19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,049,043 - 12,057,364 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546812,049,043 - 12,057,751 (-)NCBIChiLan1.0ChiLan1.0
PEX19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,566,863 - 89,573,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1189,306,840 - 89,315,224 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,630,788 - 135,639,126 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11139,551,681 - 139,559,957 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1139,551,681 - 139,559,954 (-)Ensemblpanpan1.1panPan2
PEX19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,939,054 - 21,945,281 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,939,018 - 21,944,602 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3822,012,447 - 22,018,702 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03822,055,478 - 22,061,737 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3822,055,526 - 22,067,139 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13821,960,482 - 21,966,737 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03822,356,710 - 22,362,956 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,766,324 - 22,772,586 (+)NCBIUU_Cfam_GSD_1.0
Pex19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,395,854 - 6,403,436 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936740351,045 - 359,033 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936740351,089 - 357,657 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl490,195,852 - 90,205,215 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1490,196,986 - 90,213,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,087,493 - 98,095,580 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pex19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624794975,889 - 982,721 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624794976,885 - 982,723 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 12 59
Low 8 1
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000000572   ⟹   ENSCSAP00000015487
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl203,663,001 - 3,669,404 (+)Ensembl
RefSeq Acc Id: XM_007976496   ⟹   XP_007974687
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1203,663,375 - 3,672,113 (+)NCBI
Vero_WHO_p1.0NW_0236660382,721,016 - 2,729,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007976497   ⟹   XP_007974688
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1203,663,529 - 3,672,113 (+)NCBI
Vero_WHO_p1.0NW_0236660382,721,063 - 2,729,662 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007974687 (Get FASTA)   NCBI Sequence Viewer  
  XP_007974688 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015487.1
RefSeq Acc Id: XP_007974687   ⟸   XM_007976496
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S3P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007974688   ⟸   XM_007976497
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000015487   ⟸   ENSCSAT00000000572


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002557 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000572.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.900 UniProtKB/TrEMBL
InterPro Pex19 UniProtKB/TrEMBL
  Pex19_C_sf UniProtKB/TrEMBL
KEGG Report csab:103223724 UniProtKB/TrEMBL
NCBI Gene PEX19 ENTREZGENE
PANTHER PEROXISOMAL BIOGENESIS FACTOR 19 UniProtKB/TrEMBL
  PTHR12774 UniProtKB/TrEMBL
Pfam Pex19 UniProtKB/TrEMBL
UniProt A0A0D9S3P8 ENTREZGENE, UniProtKB/TrEMBL