Lnnr6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Lnnr6 (Liver neoplastic nodule remodeling QTL 6) Rattus norvegicus

Symbol: Lnnr6
Name: Liver neoplastic nodule remodeling QTL 6
RGD ID: 738027
Previously known as: Hcrem6
Trait: liver integrity trait   (VT:0010547)    
Measurement Type: liver remodeling tumorous lesion number   (CMO:0001461)    
LOD Score: 3.3
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81365,613,454 - 109,350,286RGD_MAPPER_PIPELINE
mRatBN7.21374,862,117 - 85,581,182RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01380,403,559 - 91,629,354RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01385,295,639 - 96,143,898RGDRnor5.0
RGSC_v3.41378,189,125 - 111,154,910RGDRGSC3.4
RGSC_v3.11378,203,445 - 111,348,958RGD
Cross Type: intercross
Strains Crossed: COP F344/NRrrc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
COP  (IEA)
F344/NRrrc  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Polygenic control of hepatocarcinogenesis in Copenhagen xF344 rats De Miglio MR, etal., Int J Cancer 2004 Aug 10;111(1):9-16.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1311526Mettl13methyltransferase 13, eEF1A N-terminus and K55137488615174899937Rat
41165488LOC120096299uncharacterized LOC120096299137491488974916011Rat
1309753Vamp4vesicle-associated membrane protein 4137491987274942791Rat
620430Myocmyocilin137497673074987128Rat
1566064Prrc2cproline-rich coiled-coil 2C137500399575073701Rat
7598395LOC102555487uncharacterized LOC102555487137514960175157370Rat
628601Fmo4flavin containing dimethylaniline monoxygenase 4137515468375172874Rat
2622Fmo1flavin containing dimethylaniline monoxygenase 1137518218475214439Rat
628600Fmo2flavin containing dimethylaniline monoxygenase 2137522114975244377Rat
1594389Hsp90aa1-ps13heat shock protein 90 alpha family class A member 1, pseudogene 13137525157375254102Rat
1559491Fmo6flavin containing monooxygenase 6137525661775288167Rat
619761Fmo3flavin containing dimethylaniline monoxygenase 3137530936775334915Rat
1564745Mroh9maestro heat-like repeat family member 9137538780075443118Rat
40929598LOC120096402small nucleolar RNA SNORA17137540782675407928Rat
9112028LOC10369202040S ribosomal protein S8 pseudogene137559070675593669Rat
628884Prrx1paired related homeobox 1137560077775671896Rat
41312610LOC120096300uncharacterized LOC120096300137566651575684794Rat
1584663Cct6a-ps8chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 8137569179975693451Rat
1564990Gorabgolgin, RAB6-interacting137574567875762307Rat
1564106Ntmt2N-terminal Xaa-Pro-Lys N-methyltransferase 2137605068376093972Rat
1305191Kifap3kinesin-associated protein 3137612770276264654Rat
1308992Scyl3SCY1 like pseudokinase 3137627842876303038Rat
41306939LOC120096301uncharacterized LOC120096301137629502176297631Rat
1563470FirrmFIGNL1 interacting regulator of recombination and mitosis137630191476345842Rat
1306783Mettl18methyltransferase 18, RPL3 N3(tau)-histidine137634588876348798Rat
7603484LOC102555981uncharacterized LOC102555981137635116876367038Rat
1592115Ppid-ps19peptidylprolyl isomerase D, pseudogene 19137635887476365328Rat
1598005Ak2-ps2adenylate kinase 2, pseudogene 2137639204276392929Rat
3654Seleselectin E137640284176412741Rat
1561908Cops8-ps2COP9 signalosome subunit 8, pseudogene 1137641372176414261Rat
3655Sellselectin L137641696976436444Rat
3656Selpselectin P137647622976511846Rat
1589758F5coagulation factor V137651350976583106Rat
1308611Slc19a2solute carrier family 19 member 2137660197576616175Rat
1309708Ccdc181coiled-coil domain containing 181137662456776638224Rat
1562452Blzf1basic leucine zipper nuclear factor 1137664175776656977Rat
619880Nme7NME/NM23 family member 7137665730376786768Rat
2170Atp1b1ATPase Na+/K+ transporting subunit beta 1137678658076807096Rat
41056279LOC120096205uncharacterized LOC120096205137690473376910108Rat
41240085LOC120096206uncharacterized LOC120096206137692958176941817Rat
41216393LOC120096446U6 spliceosomal RNA137701156277011667Rat
1307176Dptdermatopontin137712322477151646Rat
7512173LOC102546371uncharacterized LOC102546371137713923677195397Rat
11372680LOC108352565uncharacterized LOC108352565137719186577214148Rat
41098812LOC120096432U2 spliceosomal RNA137724815277248300Rat
620452Xcl1X-C motif chemokine ligand 1137724868777252343Rat
41099898LOC120096302uncharacterized LOC120096302137729022177332714Rat
41169092LOC120096303uncharacterized LOC120096303137743839377441736Rat
1310145Tbx19T-box transcription factor 19137745084877484475Rat
1310623Sft2d2SFT2 domain containing 2137748477877504123Rat
1310442TiprlTOR signaling pathway regulator137752717677552026Rat
1563245Gpr161G protein-coupled receptor 161137757825777623661Rat
1561961Dcaf6DDB1 and CUL4 associated factor 6137762625777727645Rat
1563422Mpc2mitochondrial pyruvate carrier 2137772817677747664Rat
708450Adcy10adenylate cyclase 10137774775277833952Rat
1359140Mpzl1myelin protein zero-like 1137785246777889305Rat
11466947Trnap-agg14transfer RNA proline (anticodon AGG) 14137789506377895134Rat
11412620Trnap-cgg3transfer RNA proline (anticodon CGG) 3137789569577895766Rat
1304715Rcsd1RCSD domain containing 1137790189877964309Rat
11416577LOC10835264840S ribosomal protein S28 pseudogene137797181177973063Rat
40965556LOC120096304uncharacterized LOC120096304137798686477990913Rat
41363479LOC120096305uncharacterized LOC120096305137799537778003580Rat
1306804Creg1cellular repressor of E1A-stimulated genes 1137801981478032310Rat
2305Cd247Cd247 molecule137804330278118437Rat
621689Pou2f1POU class 2 homeobox 1137812061778263306Rat
1560598Styxl2serine/threonine/tyrosine interacting like 2137834936178378480Rat
1306711Gpa33glycoprotein A33137838114178414765Rat
1309333Maelmaelstrom spermatogenic transposon silencer137845707378496657Rat
1596420Ildr2immunoglobulin-like domain containing receptor 2137851877078580627Rat
41027467LOC120096307uncharacterized LOC120096307137855513978558494Rat
1306774Tada1transcriptional adaptor 1137863290878646863Rat
1308951Pogkpogo transposable element derived with KRAB domain137864744778663363Rat
41162129LOC120096308uncharacterized LOC120096308137866281478693735Rat
1559819Fmo13flavin-containing monooxygenase 13137872639878738178Rat
1595097Fmolflavin containing dimethylaniline monoxygenase like137878975978804900Rat
1595083Fmo9flavin containing monooxygenase 9137882008078841075Rat
11440287LOC108352566uncharacterized LOC108352566137906383679069731Rat
1564387Fam78bfamily with sequence similarity 78, member B137916239379250958Rat
41292405Rpl29-ps20ribosomal protein L29, pseudogene 20137925556679257575Rat
41094150LOC120096426small nucleolar RNA U13137929668479296791Rat
620742Uck2uridine-cytidine kinase 2137938080779438121Rat
1359178Tmco1transmembrane and coiled-coil domains 1137946022979483557Rat
68409Aldh9a1aldehyde dehydrogenase 9 family, member A1137950573879522539Rat
11494075Nop10l2NOP10 ribonucleoprotein like 2137950954679510189Rat
1306373Mgst3microsomal glutathione S-transferase 3137952654179547479Rat
6497316Ostf1-ps1osteoclast stimulating factor 1, pseudogene 1137954949279550765Rat
41290003LOC120096311uncharacterized LOC120096311137956446879595563Rat
1312014Lrrc52leucine rich repeat containing 52137959724479620640Rat
11416093LOC108352569uncharacterized LOC108352569137962049779662621Rat
7718804LOC102553924uncharacterized LOC102553924137970751279712787Rat
620046Rxrgretinoid X receptor gamma137974343079785173Rat
1304784Lmx1aLIM homeobox transcription factor 1 alpha137983461479978253Rat
1592612Pafah1b3-ps1platelet-activating factor acetylhydrolase 1b, catalytic subunit 3, pseudogene 1138009771880098682Rat
41208252LOC120096312uncharacterized LOC120096312138024878180254282Rat
1308213Pbx1PBX homeobox 1138027876680588563Rat
1598302Rpl7a-ps2ribosomal protein L7a, pseudogene 2138070067780701453Rat
41223721LOC120096430U2 spliceosomal RNA138101727081017344Rat
1591400Rpl7-ps4ribosomal protein L7, pseudogene 4138114052381143120Rat
9466182LOC103692065uncharacterized LOC103692065138123451881264218Rat
1307952Nuf2NUF2 component of NDC80 kinetochore complex138169367581722765Rat
2321067Timm23-ps7translocase of inner mitochondrial membrane 23, pseudogene 7138172285281799780Rat
3568Rgs5regulator of G-protein signaling 5138184825481885053Rat
3567Rgs4regulator of G-protein signaling 4138193677581943103Rat
1560672Ccdc190coiled-coil domain containing 190138214716182154863Rat
2837Hsd17b7hydroxysteroid (17-beta) dehydrogenase 7138217007982190018Rat
619855Ddr2discoidin domain receptor tyrosine kinase 2138219362382318229Rat
1561967Uap1UDP-N-acetylglucosamine pyrophosphorylase 1138234294682377558Rat
7568040LOC102549303uncharacterized LOC102549303138237765282378893Rat
2968Uhmk1U2AF homology motif kinase 1138239664682416292Rat
329845493LOC130014439uncharacterized LOC130014439138241637582427262Rat
1559938Smsl1spermine synthase like 1138243550082436942Rat
1589042Sh2d1b2SH2 domain containing 1B2138243741882461511Rat
1563935Sh2d1bSH2 domain containing 1B138248507682519401Rat
2320873C13h1orf226similar to human chromosome 1 open reading frame 226138253058982538676Rat
1565283Spata46spermatogenesis associated 46138254118382544808Rat
620106Nos1apnitric oxide synthase 1 adaptor protein138254779982820999Rat
41309715LOC120096313uncharacterized LOC120096313138263815382642859Rat
7749071LOC102550090uncharacterized LOC102550090138282110282823901Rat
1309257Olfml2bolfactomedin-like 2B138286941482906607Rat
1305471Atf6activating transcription factor 6138292757983106381Rat
41361058LOC120096368U6 spliceosomal RNA138307324083073344Rat
6491355LOC10091172840S ribosomal protein S27-like138308281783083112Rat
2318303LOC100362384ferritin light chain 1-like138311728083118226Rat
1589757Dnmt3b-ps2DNA methyltransferase 3B, pseudogene 2138311969683121858Rat
68375Dusp12dual specificity phosphatase 12138312219283131800Rat
41325170LOC120096314uncharacterized LOC120096314138313422883139869Rat
1563018FcrlbFc receptor-like B138314868583157157Rat
1306176FcrlaFc receptor-like A138316045383170170Rat
40978283LOC120096461U1 spliceosomal RNA138317561783175780Rat
631331Fcgr2bFc gamma receptor 2B138319125383207778Rat
1303067Fcgr3aFc gamma receptor 3A138324990583259921Rat
11462796Trnan-guu12transfer RNA asparagine (anticodon GUU) 12138326399683264069Rat
11386729Trnad-guc6transfer RNA aspartic acid (anticodon GUC) 6138326745483267525Rat
11426647Trnag-ucc4transfer RNA glycine (anticodon UCC) 4138326839183268462Rat
11519000Trnal-cag1transfer RNA leucine (anticodon CAG) 1138326898783269069Rat
1586661Hspa6l-ps1heat shock protein family A (Hsp70) member 6 like, pseudogene 1138327317683274317Rat
11448281Trnag-gcc3transfer RNA glycine (anticodon GCC) 3138327528383275353Rat
71069Fcgr2aFc gamma receptor 2A138328078283297535Rat
11506265Trnad-guc10transfer RNA aspartic acid (anticodon GUC) 10138329635683296427Rat
11469353Trnal-cag4transfer RNA leucine (anticodon CAG) 4138329701183297093Rat
1594388Fcgr2al1Fc gamma receptor 2A like 1138330287483315744Rat
11518338Trnad-guc11transfer RNA aspartic acid (anticodon GUC) 11138331617283316243Rat
11416840Trnal-cag5transfer RNA leucine (anticodon CAG) 5138331682683316908Rat
9127992Fcgr2a-ps1Fc gamma receptor 2A, pseudogene 1138332284083331714Rat
11518817Trnae-cuc6transfer RNA glutamic acid (anticodon CUC) 6138333736983337440Rat
11454395Trnag-ucc5transfer RNA glycine (anticodon UCC) 5138333787483337945Rat
11413703Trnad-guc7transfer RNA aspartic acid (anticodon GUC) 7138333841283338483Rat
11438814Trnal-cag2transfer RNA leucine (anticodon CAG) 2138333905983339141Rat
41338342Trnag-gcc14transfer RNA glycine (anticodon GCC) 14138334004783340117Rat
41246266Trnae-cuc12transfer RNA glutamic acid (anticodon CUC) 12138334636983346440Rat
11428758Trnag-ucc8transfer RNA glycine (anticodon UCC) 8138334688083346951Rat
41163880Trnad-guc15transfer RNA aspartic acid (anticodon GUC) 15138334741883347489Rat
41325826Trnal-cag12transfer RNA leucine (anticodon CAG) 12138334806583348147Rat
11395224Trnag-gcc6transfer RNA glycine (anticodon GCC) 6138334902583349095Rat
41362358Trnae-cuc13transfer RNA glutamic acid (anticodon CUC) 13138335533783355408Rat
41004142Trnag-ucctransfer RNA glycine (anticodon UCC)138335584883355919Rat
41007678Trnad-guctransfer RNA aspartic acid (anticodon GUC)138335638683356457Rat
41237828Trnad-guc17transfer RNA aspartic acid (anticodon GUC) 17138335638683356457Rat
41382661Trnal-cag14transfer RNA leucine (anticodon CAG) 14138335703383357115Rat
40984440Trnag-gcctransfer RNA glycine (anticodon GCC)138335798983358059Rat
40938478Trnae-cuctransfer RNA glutamic acid (anticodon CUC)138336428083364351Rat
41279699Trnae-cuc10transfer RNA glutamic acid (anticodon CUC) 10138336428083364351Rat
41213261Trnag-ucc9transfer RNA glycine (anticodon UCC) 9138336479183364862Rat
41381727Trnad-guc16transfer RNA aspartic acid (anticodon GUC) 16138336532983365400Rat
41104094Trnal-cagtransfer RNA leucine (anticodon CAG)138336597683366058Rat
41007014Trnag-gcc12transfer RNA glycine (anticodon GCC) 12138336693683367006Rat
41123084Trnae-cuc11transfer RNA glutamic acid (anticodon CUC) 11138337317683373247Rat
41228731Trnad-guc18transfer RNA aspartic acid (anticodon GUC) 18138337419883374269Rat
40938478Trnae-cuctransfer RNA glutamic acid (anticodon CUC)138346801183468081Rat
41274182Trnag-ucc10transfer RNA glycine (anticodon UCC) 10138346851583468586Rat
41231494Trnad-guc14transfer RNA aspartic acid (anticodon GUC) 14138346905583469126Rat
41306063Trnal-cag11transfer RNA leucine (anticodon CAG) 11138346970483469786Rat
40984440Trnag-gcctransfer RNA glycine (anticodon GCC)138347066283470732Rat
41352249Trnag-gcc13transfer RNA glycine (anticodon GCC) 13138347066283470732Rat
11518817Trnae-cuc6transfer RNA glutamic acid (anticodon CUC) 6138347712283477193Rat
11454395Trnag-ucc5transfer RNA glycine (anticodon UCC) 5138347762583477696Rat
11413703Trnad-guc7transfer RNA aspartic acid (anticodon GUC) 7138347816383478234Rat
41261179Trnal-cag10transfer RNA leucine (anticodon CAG) 10138347881183478893Rat
11457523Trnag-gcc4transfer RNA glycine (anticodon GCC) 4138347978283479852Rat
11400800Trnae-cuc7transfer RNA glutamic acid (anticodon CUC) 7138348618283486253Rat
11357429Trnag-ucc6transfer RNA glycine (anticodon UCC) 6138348668583486756Rat
41007678Trnad-guctransfer RNA aspartic acid (anticodon GUC)138348722383487294Rat
41219038Trnal-cag15transfer RNA leucine (anticodon CAG) 15138348787183487953Rat
11457523Trnag-gcc4transfer RNA glycine (anticodon GCC) 4138348881883488888Rat
11357429Trnag-ucc6transfer RNA glycine (anticodon UCC) 6138349574383495814Rat
11413331Trnad-guc8transfer RNA aspartic acid (anticodon GUC) 8138349636483496435Rat
11363202Trnag-gcc5transfer RNA glycine (anticodon GCC) 5138349969783499767Rat
2313878Znrd1-ps1zinc ribbon domain containing 1, pseudogene 1138351089583511537Rat
11387238Trnal-cag3transfer RNA leucine (anticodon CAG) 3138351451883514600Rat
11454394Trnad-guc9transfer RNA aspartic acid (anticodon GUC) 9138351507183515142Rat
11498207Trnag-ucc7transfer RNA glycine (anticodon UCC) 7138351557183515642Rat
11398805Trnae-cuc8transfer RNA glutamic acid (anticodon CUC) 8138351590383515974Rat
11388196Trnav-cac3transfer RNA valine (anticodon CAC) 3138352375883523830Rat
1562658Cfap126cilia and flagella associated protein 126138352665783542552Rat
4145546LOC100526655ribosomal protein L29 pseudogene138353173983532345Rat
1359454Sdhcsuccinate dehydrogenase complex subunit C138354465283565560Rat
3109Mpzmyelin protein zero138357081183576680Rat
1593809Pcp4l1Purkinje cell protein 4-like 1138358899283612631Rat
621400Nr1i3nuclear receptor subfamily 1, group I, member 3138363294083638193Rat
1562006Tomm40ltranslocase of outer mitochondrial membrane 40 like138363669283641654Rat
2131Apoa2apolipoprotein A2138364446083646358Rat
2599Fcer1gFc epsilon receptor Ig138364944783654248Rat
1307109Ndufs2NADH:ubiquinone oxidoreductase core subunit S2138365440283671474Rat
621242Adamts4ADAM metallopeptidase with thrombospondin type 1 motif, 4138367055683680045Rat
1359221B4galt3beta-1,4-galactosyltransferase 3138369137883697448Rat
1310543Ppoxprotoporphyrinogen oxidase138369766183701998Rat
1588822Usp21ubiquitin specific peptidase 21138370267283709215Rat
1303313Ufc1ubiquitin-fold modifier conjugating enzyme 1138370932983719762Rat
7700680Gng5-ps1G protein subunit gamma 5, pseudogene 1138372562883727878Rat
620050Dedddeath effector domain-containing138375587483769982Rat
727821Nit1nitrilase 1138376988883773324Rat
1591406Pfdn2prefoldin subunit 2138377230183791367Rat
1561025Klhdc9kelch domain containing 9138379039083794080Rat
1559826Nectin4nectin cell adhesion molecule 4138380258983821711Rat
1561419Arhgap30Rho GTPase activating protein 30138382229083843634Rat
620974Usf1upstream transcription factor 1138384523083854875Rat
2323815Tstd1thiosulfate sulfurtransferase like domain containing 1138385342183854875Rat
621842F11rF11 receptor138387379783897388Rat
2323611Ptmal5prothymosin alpha like 5138392072383922032Rat
41231914LOC120096440U5 spliceosomal RNA138393188183931996Rat
1561048Itln1intelectin 1138393223483958243Rat
1587602Mif-ps9macrophage migration inhibitory factor, pseudogene 9138396310983963614Rat
41389617LOC120093159natural killer cell receptor 2B4-like138397913484002215Rat
11402621LOC10835257260S ribosomal protein L31 pseudogene138400006884000983Rat
68400Cd244l1CD244 molecule like 1138401888784036612Rat
9330179Cd244CD244 molecule138405133984082864Rat
1308341Ly9lymphocyte antigen 9138407934584100783Rat
7671987LOC102549964uncharacterized LOC102549964138411882084129028Rat
1560190Slamf7SLAM family member 7138413565684154528Rat
9329753LOC103692286uncharacterized LOC103692286138415460084184860Rat
620620Cd48Cd48 molecule138418488484209144Rat
1560634Slamf1signaling lymphocytic activation molecule family member 1138427031684305497Rat
9431477LOC103692288uncharacterized LOC103692288138428700284325493Rat
1564553Cd84CD84 molecule138432758084367153Rat
1561848Slamf6SLAM family member 6138438456184405300Rat
1585268Rps15-ps16ribosomal protein S15, pseudogene 16138442131284421729Rat
1309442Vangl2VANGL planar cell polarity protein 2138446273184489404Rat
1310261Nhlh1nescient helix loop helix 1138451734784522548Rat
631418Ncstnnicastrin138453044284546454Rat
1310525CopaCOPI coat complex subunit alpha138454648384586879Rat
1306913Pex19peroxisomal biogenesis factor 19138459227784608793Rat
1308513Dcaf8DDB1 and CUL4 associated factor 8138460983884667025Rat
1306055Pea15proliferation and apoptosis adaptor protein 15138465781584667437Rat
1586677Casq1calsequestrin 1138467064884680339Rat
61952Atp1a4ATPase Na+/K+ transporting subunit alpha 4138468376684719790Rat
2168Atp1a2ATPase Na+/K+ transporting subunit alpha 2138472959784754544Rat
1311500Igsf8immunoglobulin superfamily, member 8138477034884781534Rat
621440Kcnj9potassium inwardly-rectifying channel, subfamily J, member 9138478082684787928Rat
61822Kcnj10potassium inwardly-rectifying channel, subfamily J, member 10138480202684835383Rat
71041Pigmphosphatidylinositol glycan anchor biosynthesis, class M138483832984842026Rat
9205262LOC103692291uncharacterized LOC103692291138487114684872631Rat
11355415LOC108352575uncharacterized LOC108352575138490018384924193Rat
11418586LOC108353436uncharacterized LOC108353436138492426084925715Rat
1305945Slamf9SLAM family member 9138494189684944749Rat
1304566Igsf9immunoglobulin superfamily, member 9138494864384965616Rat
1310840Tagln2transgelin 2138496698084973973Rat
1561559Cfap45cilia and flagella associated protein 45138498947485012880Rat
41061811LOC120096318uncharacterized LOC120096318138500516185018197Rat
1562464Vsig8V-set and immunoglobulin domain containing 8138502317785031364Rat
1306263Slamf8SLAM family member 8138504772985057571Rat
1563939Fcrl6Fc receptor-like 6138506270985072308Rat
1309202Dusp23dual specificity phosphatase 23138509789985100054Rat
2411CrpC-reactive protein138513538485175178Rat
11428601LOC10835262160S ribosomal protein L6 pseudogene138523853785250025Rat
11376557Rps29-ps16ribosomal protein S29, pseudogene 16138528463885284949Rat
1334438Or10as1-ps1olfactory receptor family 10 subfamily AS member 1, pseudogene 1138535825685359000Rat
68322Apcsamyloid P component, serum138537321985374195Rat
40960097LOC120096401small nucleolar RNA SNORA17138541292985413048Rat
11393231LOC108352577uncharacterized LOC108352577138542401185436529Rat
1333702Or10j5olfactory receptor family 10 subfamily J member 5138543065585431584Rat
1332837Or10at1-ps1olfactory receptor family 10 subfamily AT member 1, pseudogene 1138553163685532241Rat
1334126Olr1578-psolfactory receptor pseudogene 1578138554676985547308Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10204D13Arb11234138475327784753511Ratregion
10205D13Mgh17398138475311384753510Ratregion
34540D13Mgh14238138475531884755556Ratregion
37240D13Rat63103137704678777046890Ratregion
37554D13Rat57148138075325680753406Ratregion
36506D13Rat32108137486211774862225Ratregion
34769D13Rat33161137847270778472868Ratregion
39950D13Rat133115138300588983006034Ratregion
40568D13Rat152109138558107385581182Ratregion
40656D13Rat131155137731293377313088Ratregion
38582D13Rat56235138169065581690878Ratregion
41970D13Arb13132138473106684731198Ratregion
43001D13Rat183202137752353677523740Ratregion
43002D13Rat184227137927434979274584Ratregion
43004D13Rat185192138383241983832611Ratregion
41112D13Rat132228137829113278291378Ratregion
41900D13Rat190135138015760680157741Ratregion
45062D13Got55173137647835976478532Ratregion
45067D13Got111192137558793975588131Ratregion
45070D13Got61235137769764277697877Ratregion
45071D13Got57252137641583476416086Ratregion
45072D13Got56280137712785877128138Ratregion
45073D13Got66160138004374280043904Ratregion
45075D13Got60125137749626777496394Ratregion
45076D13Got58198137627400076274198Ratregion
45077D13Got63211137796034577960556Ratregion
45079D13Wox8111138473078884730899Ratregion
45081D13Got72254138473752984737783Ratregion
45086D13Got71148138329094583291091Ratregion
45089D13Got70117138353044983530566Ratregion
625775D13Got68164138021699380217157Ratregion
60049D13Got59177138259800782598186Ratregion
60050D13Got62223138173064481730867Ratregion
60051D13Got65203138178908981789292Ratregion
60052D13Got67152138173508181735233Ratregion
66513D13Mco6329138501485385015182Ratregion
66515D13Mco7203137668814976688352Ratregion
1632068D13Got241122137965372579653847Ratregion
1638531D13Got269145138059976780599912Ratregion
1635055D13Wox19173138475723584757410Ratregion
1635734D13Got252185137766289277663077Ratregion
1637270D13M1Mit110104137990120279901306Ratregion
1637629D13Got23387137575828875758375Ratregion
1637645D13Wox25148137680490776805053Ratregion
7206022Olfr16733138543084585431578Ratregion
5036087Atp1a2271138473271484732985Ratregion
5036127Crp152138516286385163015Ratregion
5038968RH127436216138483489584835111Ratregion
5036284W53272109138370325783703366Ratregion
5039038RH127477187138453055284530739Ratregion
5036753AU049094130138424181584241946Ratregion
5033989RH140936180137488650874886688Ratregion
5025996RH130509187138219366182193848Ratregion
5026084RH130849202137630261976302821Ratregion
5026098RH130903191138188584181886032Ratregion
5031498AU048126153137688856376888716Ratregion
5028759RH142220167138193702481937191Ratregion
5028885RH142695144138256023782560381Ratregion
5028959RH142977110138254784582547955Ratregion
5034476BE118958202138378443383784635Ratregion
5026548RH132632202138465860084658802Ratregion
5026832RH133702184138193870181938885Ratregion
5032201AF069985114138376992983770043Ratregion
5032243AI852300119137858035378580472Ratregion
5035070D7S2869105138413787484137979Ratregion
5027201AI17322291137658079176580882Ratregion
5027203AW495251123138219928782199410Ratregion
5027205AW125175116138369705683697172Ratregion
5029889BE097448192138239758782397779Ratregion
5032691RH134941181138319182383192004Ratregion
5032827RH135448201137681178476811985Ratregion
5035268BM391802207137766415177664358Ratregion
5027579AI644422140138483793684838076Ratregion
5033133RH137718123137574605375746176Ratregion
5025178RH127315208138472973384729941Ratregion
5025278RH127703195138537342185373616Ratregion
5033423RH138779222137569593775696159Ratregion
5033715RH139850210137745112377451333Ratregion
5051312AW552088112137812102078121131Ratregion
5055885RH144059216137727040377270619Ratregion
5051787RH94658112137811781878117930Ratregion
5054403RH143204100137634792076348020Ratregion
5057564BI283117153137530987275310025Ratregion
5055663RH143930147137629561876295765Ratregion
5057984BF386407150137681924176819391Ratregion
5058780BE102416171138358958783589758Ratregion
5059632BE097482159138057593980576098Ratregion
5056159RH144217137137835873778358874Ratregion
5056427RH144372106137605255776052663Ratregion
5052297MHAa78a4.seq207138248055582480762Ratregion
5059006BF387328173137752370277523875Ratregion
5059016BF387362185138377232683772511Ratregion
5058230AA859050123137938400079384123Ratregion
5058360AA859700390138369774683698136Ratregion
5049930RH133764180138467066384670843Ratregion
5053507RH142689226138057021280570438Ratregion
5050494RH134088193138325960683259799Ratregion
5053927RH142931148137790296177903109Ratregion
5050212RH133926210138384395783844167Ratregion
5050234RH133938206137522188075222086Ratregion
5052899RH142338188137715056177150749Ratregion
5053007RH142400154138369692483697078Ratregion
5051058RH134414193138458654884586741Ratregion
5051084RH134430219138293048782930706Ratregion
5041630RH128967194137790192377902117Ratregion
5041786RH129058171137978500179785172Ratregion
5041912RH129131162138357648583576647Ratregion
5043994RH130349201138031424280314443Ratregion
5044832RH130829214137835670778356921Ratregion
5043702RH130177180137938084579381025Ratregion
5045314RH131107220137488618674886406Ratregion
5041388RH128828203138379109983791302Ratregion
5045692RH131324210137661584276616052Ratregion
5046184RH131607202138314877983148981Ratregion
5044214RH130475191138217015582170346Ratregion
5044806RH130814416138385438583854801Ratregion
5048678RH133042219137714589277146111Ratregion
5048756RH133087186138253069682530882Ratregion
5044450RH130610200137626445476264654Ratregion
5044896RH130865189137515483575155024Ratregion
5047566RH132401211138477923684779447Ratregion
5045000RH130925177138217340182173578Ratregion
5049122RH133298195137948309679483291Ratregion
5047902RH132595217137651150776511724Ratregion
5047948RH132621219137522446075224679Ratregion
5046920RH132031188138390059083900778Ratregion
5046966RH132057220138313957683139796Ratregion
5048196RH132763201137680003176800232Ratregion
5048290RH132818180137494883774949017Ratregion
5049812RH133696216138497367384973889Ratregion
5041966RH129161183138364947683649659Ratregion
5039886RH127964209138370943083709639Ratregion
5048550RH132968182138466881184668993Ratregion
5041992RH129176194138370104883701242Ratregion
5042480RH129459191138354218283542373Ratregion
5040890RH128542202138369711483697316Ratregion
5040036RH128053204137812075478120958Ratregion
5040182RH128136200137518223875182438Ratregion
5072646RH136970158138292759782927755Ratregion
5072690RH136996195137864722578647420Ratregion
5072700RH137002180137560096175601141Ratregion
5072446RH136854155138290637182906526Ratregion
5074128RH137838218138477980484780022Ratregion
5074542RH138077135138446432984464464Ratregion
5074582RH138100160137864325978643419Ratregion
5076878RH139431149137492625474926403Ratregion
5080568RH141655187138363671483636901Ratregion
5076188RH139030140137772766177727801Ratregion
5079522RH141046202137803167378031875Ratregion
5076818RH13939683138169383081693913Ratregion
5076328RH139112256138371043583710691Ratregion
5079602RH141095204137785262277852826Ratregion
5077220RH139631209137493907874939287Ratregion
5076892RH139439245137493904274939287Ratregion
5077808RH139971183137643606276436245Ratregion
5077856RH139999195138501763185017826Ratregion
5076554RH139243220137567058975670809Ratregion
5079730RH141170182137762326477623446Ratregion
5077910RH140030196137857533578575531Ratregion
5079948RH141295191138484045184840642Ratregion
5080056RH141357201138193709481937295Ratregion
5078294RH140256220138453060784530827Ratregion
5079030RH140694210137752730977527519Ratregion
5080072RH141367181138465713884657319Ratregion
5080204RH141445210137523594775236157Ratregion
5080222RH141455189138239667182396860Ratregion
5079072RH140719129138193757981937708Ratregion
5071098RH134885201138465091484651115Ratregion
5080498RH141613201138219904082199241Ratregion
5080516RH141624196138319327883193474Ratregion
5071276RH134989188138219455582194743Ratregion
5071416RH135069202138473141884732703Ratregion
5073612RH137537123137834938778349510Ratregion
5070598RH134594216138376973783769952Ratregion
5070782RH134702197137494253374942730Ratregion
5073108RH137242213137748474577484958Ratregion
5071618RH135186185137977947579779660Ratregion
5074028RH137777127138509793485098061Ratregion
5074322RH137950142138289964482899786Ratregion
5074372RH137979219137574925575749474Ratregion
5074434RH138015128137770712577707253Ratregion
5074494RH138049135138255026482550399Ratregion
5071298RH135002207137630155876301765Ratregion
5072218RH136721130137818811678188246Ratregion
5065104BF405831154138370240583702559Ratregion
5068098AU047349173137600636176006534Ratregion
5068576AU047062193137586619475866387Ratregion
5068704AU046984271138463760284637861Ratregion
5068716AU046977220137551437075514592Ratregion
5068796AU046924197138300582183006015Ratregion
5068834AU046896111138320664783206758Ratregion
5070089RH94466195137678709676787291Ratregion
5070111RH94479170137811758878117758Ratregion
5070133RH9449190137651170976511799Ratregion
5060726BI286597154138465798584658139Ratregion
5064294BF399011194138275113082751324Ratregion
5060048BE103703180138495750184957681Ratregion
5062084BI294933168138370459383704761Ratregion
5065824BE109994209138484259684842805Ratregion
5060732BF389043236137753213177532367Ratregion
5065946BE116270199138219686482197063Ratregion
5062858BE113081150138083776980837919Ratregion
5061186BI293319100137516910775169207Ratregion
5063052BE113649218138313091983131137Ratregion
5064720BF399606155138465022684650381Ratregion
5061640BE105710150138251837782518527Ratregion
5082103BF409555138138464923984649377Ratregion
5082223BI274278117137924019179240308Ratregion
5087124AI237321173137938232879382501Ratregion
5087329AI406786160138369429883694458Ratregion
5087858AA004315101138193901581939116Ratregion
5082737AA817884218138188499081885208Ratregion
5082803BF390143150137664151576641665Ratregion
5087854AA437972136138235088782351891Ratregion
5089871AU049413184138392327683923462Ratregion
5083107BI281745164138057607780576241Ratregion
5083133BF390833173137775493877755111Ratregion
5088058Ppox130138369778183698111Ratregion
5089975AU049475215138423461884234833Ratregion
5090873AU050020118137660157076601688Ratregion
5088895AU048833154138250720582507359Ratregion
5089701AU049311175138371110383711278Ratregion
5090493AU049783298138165494081655238Ratregion
5084578AI169813110137531699475317104Ratregion
5084634AI236158121137724880377248924Ratregion
5084674AI171226192138240084682401038Ratregion
5090019AU049502184138324573083245909Ratregion
5090265AU049648264138216225882162522Ratregion
5081813AA900320195138354483483545029Ratregion
5087848W57327577138377207283772649Ratregion
5087850AA03317280138477752284777602Ratregion
5082425BE119368176138347243883472614Ratregion
5082425BE119368176138348148183481657Ratregion
5082425BE119368176138349051983490695Ratregion
5085481BM390423181138311968683119867Ratregion
5090885AU021979234138239672282396956Ratregion
5085208Kcnj9174138478131384781487Ratregion
5085738BF388090164138252718882527352Ratregion
5085752AA945617149138377001783770166Ratregion
5090067AU049530126138497252284972648Ratregion
5084704AI235664197137748603977486236Ratregion
5081144RH141990193137626357776263770Ratregion
5085006AI103968195138496528484965479Ratregion
5086608BF40161298137819374678193844Ratregion
5081587BE117499158138027884780279005Ratregion
5085601AW535487153138058736380587516Ratregion
5083377AA81891396138377003883770134Ratregion
5083553BI282704200138188812281888322Ratregion
5086731AA850497180137626386676264046Ratregion
5085882AI013247235138497361184973846Ratregion
5507654AA109065563137946028579460848Ratregion
5507723STS-F042111569138006650780068076Ratregion
5504462PMC21147P294138377258483772678Ratregion
5504526PMC26746P1117138459942284600242Ratregion
5504240AL03359184138050954580509629Ratregion
5504418PMC197251P5483137811728278117765Ratregion
5504262G43283140138370269283702832Ratregion
5504326D1S2071E127138379008783790214Ratregion
5504963F11r95138389426483894602Ratregion
5505259Eef1g393138413809884138492Ratregion
5505859UniSTS:49595794138188321281883305Ratregion
5506708G42043206138465403184654237Ratregion
5506710G42060149138409976184099910Ratregion
5506919G49234138138466121984661357Ratregion
5507233G64925160138468101484681174Ratregion
5507237G64928138138483133584831473Ratregion
5499721UniSTS:234254362137574571875746081Ratregion
5500278D13S1219128138031395480314082Ratregion
5500735AFM310VE11531137542868775430218Ratregion
5501447Tagln2589138497177684972365Ratregion
5504686PMC48141P4775137498570074986475Ratregion
5504690PMC48141P5200137498627574986475Ratregion
5502094MARC_4129-4130:996679399:1694138384960283850296Ratregion
5501860MARC_16101-16102:1018026133:1986138193965881940647Ratregion
5506704G42052229138478442084784649Ratregion
5506767G45242145138283888982839034Ratregion
5502415RH124784195138465714284657336Ratregion
6893294D13Hmgc486196137573670375736899Ratregion
6893296D13Hmgc871149137583427575834424Ratregion
Position Markers

Flank 1: (D13Rat32)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21374,862,117 - 74,862,225 (+)MAPPER
Rnor_6.01380,403,559 - 80,403,666NCBI
Rnor_5.01385,295,639 - 85,295,746UniSTS
RGSC_v3.41378,189,125 - 78,189,379RGD
RGSC_v3.41378,189,257 - 78,189,364UniSTS
RGSC_v3.11378,203,445 - 78,203,552RGD
Celera1374,612,920 - 74,613,027UniSTS
RH 3.4 Map13468.2UniSTS
RH 3.4 Map13468.2RGD
RH 2.0 Map13507.8RGD
SHRSP x BN Map1330.5998RGD
FHH x ACI Map1330.36RGD
Peak: (D13Rat152)
Rat AssemblyChrPosition (strand)Source
GRCr81388,113,400 - 88,113,509 (+)Marker Load Pipeline
mRatBN7.21385,581,073 - 85,581,182 (+)MAPPER
Rnor_6.01391,629,246 - 91,629,354NCBI
Rnor_5.01396,143,790 - 96,143,898UniSTS
Celera1385,185,751 - 85,185,859UniSTS
SHRSP x BN Map1340.7799RGD
SHRSP x BN Map1340.7799UniSTS
FHH x ACI Map1341.62RGD
Flank 2: (D13Rat152)
Rat AssemblyChrPosition (strand)Source
GRCr81388,113,400 - 88,113,509 (+)Marker Load Pipeline
mRatBN7.21385,581,073 - 85,581,182 (+)MAPPER
Rnor_6.01391,629,246 - 91,629,354NCBI
Rnor_5.01396,143,790 - 96,143,898UniSTS
Celera1385,185,751 - 85,185,859UniSTS
SHRSP x BN Map1340.7799RGD
SHRSP x BN Map1340.7799UniSTS
FHH x ACI Map1341.62RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133466346187525369Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)136906051977046890Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
1302791Stl29Serum triglyceride level QTL 293.30.0011blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)138473078886800898Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)135949252277046890Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1366451204106807694Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)137486211785581182Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)137402391880753406Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Lnnr6

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross