Advanced Search (OLGA)

Gene: LOC102555487 (uncharacterized LOC102555487) Rattus norvegicus

Analyze

Symbol:

LOC102555487

Name:

uncharacterized LOC102555487

RGD ID:

7598395

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	77,683,591 - 77,690,263 (+)	NCBI		GRCr8
mRatBN7.2	13	75,149,601 - 75,157,370 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	13	80,681,801 - 80,687,739 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	13	85,578,518 - 85,584,073 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	13	74,889,277 - 74,894,567 (+)	NCBI		Celera
Cytogenetic Map	13	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
12879444	Bp397	Blood pressure QTL 397			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	47601426	92601426	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001840884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_339848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_001840884

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	77,683,591 - 77,690,263 (+)	NCBI
mRatBN7.2	13	75,149,601 - 75,157,370 (+)	NCBI
Rnor_6.0	13	80,681,801 - 80,687,739 (+)	NCBI

Sequence:

show sequence

TTGACTATTAAAAGTATCAGTAATCTTGGGATCAAGAGCTGTCTCAGCAGGTAAAAAGTTTGCC
TCTAAGCCCAAGCCTGATGACCTGAGTTTGACCTCTAAAGCTGGCATGGTAGACAAGGAGAGTA
GGTGCCCACAAGTTATCTTTGACCTCCACATGTGCCTCCTGGGATCCGCATGCACACCCATAAT
AAATACATGTAATAAAAGCTTTTTAAAATAATCACTCATCTTATAGCCTAGCCTTCAAAGTAGT
GTGAGACCGGAGATTGTTCTAAGTTGCTGTCATGTAAACTGTCACAAGGCACCACTTGTTGTCC
AACAATCCCAGTTATAATCACTATGTGGTTAAATAAAAGACAAAGCACACTTATTTTCATAATA
TTTAGGTTCATTTCTGATGCTGAAGTCATGATCAAGCCTCTTATTTATTATGAGATTCTTATAA
TCCTTTAAAATGCATCCAGTTATGATGGCCATTTCCTGCTACCATCTATCTGTTCTTTGAGTGC
TGGAGTCATGGCGTGTGGTACCCACAATATTTAGAAATCTGTTGAAAGTGTAGAGGTAGCAAGG
AGGAAGAGGAAGAGGAGTGAGCAAAGAAGACTCCCTGGAGGAGGCAGAGCCACAGTGCTCATGT
TAGGGCTTCAGTGACAGATAAGCTGAGGTGTCTGGAGGCAACGGCATTGCCTCTCAAGGGAGCC
AGTGAAATATCCTTGGCTTTAAGTGTTCAGATCCCTGGGTTCTCCCCTATTTGTTGTGTGCACA
AGGAAGAATTACTTCTCTGACACTTTGATTTCTTATTTGGAAATTTATACATAGGAAAATACAG
CATATTATACATCTAAGTCATGGTAAGCTAATAAAGACATCTTAGCTCTGCTTGCTTCCTAAGG
GACTCGATGAGAGACACCAATAGCACAGACAGAGACTTGTCTGTGGTTGGTCAGCTTTAGTTGG
TTTGGAAGATTTGAAATTAAGTGCCCCTTGTACTGGGGAGTTGTCAGTAGGAACCTAGACACAT
TAACCAACTCTAAAAGAAGGGACACTTCTAATGTCTGAAAACAGTTCCTCCCTTGTTAATGTTC
TCCTACTGTTGCATGTTGGAGGGCATAAGTAGGGAATGATGATGGGGGATCCAGGAACAGAACA
GCAATACTAGCTAGAAAGCATTGCTATGGAGAACTCGTGGGAAGCAAAGGCCATACCTCCTGGT
TATACTGCAGGAAAACAGCAACAGGAAATAGTGGTAGTTTCCTAATCTTTTAATTCAGAGAATG
GAATATTTGAAACAATCGGCGGTTAGCTTACTCTGAATGACATACTCTGTGTGTTTCAGGCAAT
GCTTATCATAAGTTGCCTGTAGTGAGTGCCACCATTTTCCAGATGAGGTCACGGAGGCTAAGTA
ATTTGGCCAAGGCCTCAGAGCTCACAAGGGAGCTGGGATCAAAATCCAGGTCTCCTTCTCATTA
GTTCTGGTTAGTCCGTATTCCTCCTGATTAGTCATCCTAAGCAACATGCTTGTGTCCCAGCAGT
TAGAGTTCCTCTCATTGCCCCGTGGACTGTCTTCCACTTAAACAGTAACCCTTGGTAGAGGGTC
CTTGTCTGTTTACAAGGCTAAGTTAATGGGAGGTGAGGCATTGTGTTGGCAGGAGAACCGGGAC
AGATGAAGTCAGATGAAAAATGTTAGTCTATGAAGTCACTACTTATTCATTCAATAATCAAAAT
ATGGACTTAGATGTGCTTTGTATTAAGTAATGCTTGGGATAAAATAACGACAAATGAGAAGGAT
CCATCATTTATTATGAGATATAAAACATCAAGTGACAGCTGGGTTTGGTGGCACTTTTTACATT
ACAGCAGTTGAGCAGAGGTGGGAAGATTTCTAAGAGTTCAAGGCCAGTTTATACCAAGAGTTTT
AGTCCAGCCAAAGCCATATACTGAGACTCTATATTACCCCCACCCAAATACTCCCAAAACACCA
AACCCCACAAAACTCCAAACTCTCTCAAACAAAAAGTCATGTGATTTTACACATGATAGGTATT
TATAATTGTCACTCTTACGCAACTTAAAATCATCTTGAAATAGATTCTCAATGGGTAATTGCCT
AGATAGGTTGGCCTACAGGTATGCCTGTGAGGGATTTTTATTAAGTATGTTTATGAGGTAAGAC
CCACTTTGAATGTGGGTAGCACCATTCCATGGTCTGGGCTACGATCTGTACAAAAGTAGAGAAA
GTTGCCTGAACATTAAATATGCATGTATTAATTTTTCTGGGATGTGATATGACCAGATGTTTTA
AGTTCTGCCACCTTGACTTTTCTGCTATAAATTGTAATGTGGAACTGCGAGTTAAAACAAACCC
TTCTCTAAATTGATTTCTGCCAGGGTCCTTTATCCCAGGGACAGAAATAACTAGGACATCATTG
TGAGAAAAGAGTAATAACAGAGTAGGATGTGAGCTGTGATCTCTGCACTGAGGTGATCTGCTGT
GCCTTGGAGTTTCAGAAAAGTCTGTACGCAACAAGATAACCATAGGAGACTGTTGGACAATGTT
AGTGGGAGGACCTACCCTCTGGGTTTAGGTTGGATTCAGCCACTGGATAACATTGTCAGGAGAT
TAATTAGCAAAAAAGACTTTTTTTCCCTGAGGGTTTGACTTTTTGGGGTCCTCATGTTTTGTCT
TCTTTATCACTTGACTGAACACTGTGGCTAGTGTTAGGTGGCTTTTGCTATGTGGGCATGTTTT
TAATAACTGCTTCCTTTCTTTGCTTTTTCAGGTTCCAAGATAGTAAACCCATTGTTACCAGTCA
TTTGAGGCAGACATTTCATTATAATCCCTCCTTCATATCGTTTAACATAATCTCTACATTAAAA
CTTCACAGAAAAATACGTTTTTGGCCACGTGGAACTCGTCCTTGTGATCAGCTTGAACTCATGA
GAACGTTACTCGTTCAACCTGTTGTAACCCTTAGAGTATAAACCAAGGTTCTGAATAAAATTGG
CTATTGCATAAGA

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-17640	BioCyc
NCBI Gene	LOC102555487	ENTREZGENE
PhenoGen	LOC102555487	PhenoGen
RNAcentral	URS0000CCE1E4	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-18	LOC102555487	uncharacterized LOC102555487			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message