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Gene: Lmx1a (LIM homeobox transcription factor 1 alpha) Rattus norvegicus
Symbol: Lmx1a
Name: LIM homeobox transcription factor 1 alpha
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity. Involved in brain development. Predicted to localize to the nucleus. Orthologous to human LMX1A (LIM homeobox transcription factor 1 alpha); INTERACTS WITH 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LIM homeobox transcription factor 1-alpha; LOC289201
Homo sapiens (human) : LMX1A (LIM homeobox transcription factor 1 alpha)  HGNC  Alliance
Mus musculus (house mouse) : Lmx1a (LIM homeobox transcription factor 1 alpha)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lmx1a (LIM homeobox transcription factor 1 alpha)
Pan paniscus (bonobo/pygmy chimpanzee) : LMX1A (LIM homeobox transcription factor 1 alpha)
Canis lupus familiaris (dog) : LMX1A (LIM homeobox transcription factor 1 alpha)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lmx1a (LIM homeobox transcription factor 1 alpha)
Sus scrofa (pig) : LMX1A (LIM homeobox transcription factor 1 alpha)
more info ...
Is Marker For: Strains:   F344.ACI-Lmx1aqc/Kyo  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.01385,916,753 - 86,061,534 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1385,918,252 - 86,061,176 (+)Ensembl
Rnor_5.01390,559,608 - 90,699,381 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41383,354,523 - 83,498,511 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11383,368,247 - 83,511,002 (+)NCBI
Celera1379,539,405 - 79,680,950 (+)NCBICelera
Cytogenetic Map13q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Lmx1a
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1304784
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.