Gene: Lmx1a (LIM homeobox transcription factor 1 alpha) Rattus norvegicus
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Symbol: Lmx1a
Name: LIM homeobox transcription factor 1 alpha
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN brain development; axon guidance (ortholog); central nervous system development (ortholog); ASSOCIATED WITH Hearing Loss (ortholog); sensorineural hearing loss (ortholog); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; bisphenol A
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LIM homeobox transcription factor 1-alpha; LOC289201
Orthologs:
Homo sapiens (human) : LMX1A (LIM homeobox transcription factor 1 alpha)  HGNC  Alliance
Mus musculus (house mouse) : Lmx1a (LIM homeobox transcription factor 1 alpha)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lmx1a (LIM homeobox transcription factor 1 alpha)
Pan paniscus (bonobo/pygmy chimpanzee) : LMX1A (LIM homeobox transcription factor 1 alpha)
Canis lupus familiaris (dog) : LMX1A (LIM homeobox transcription factor 1 alpha)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lmx1a (LIM homeobox transcription factor 1 alpha)
Sus scrofa (pig) : LMX1A (LIM homeobox transcription factor 1 alpha)
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Is Marker For: Strains:   F344.ACI-Lmx1aqc/Kyo  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01385,916,753 - 86,061,534 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01390,559,608 - 90,699,381 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41383,354,523 - 83,498,511 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11383,368,247 - 83,511,002 (+)NCBI
Celera1379,539,405 - 79,680,950 (+)NCBICelera
Cytogenetic Map13q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Lmx1a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1304784
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-02-05
Status: ACTIVE