Copa (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 13 | 87,078,853 - 87,119,256 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 13 | 84,546,483 - 84,586,879 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 13 | 84,545,943 - 84,586,874 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 13 | 87,049,812 - 87,090,200 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 13 | 88,450,073 - 88,490,458 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 13 | 85,634,687 - 85,675,000 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 13 | 90,467,285 - 90,508,894 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 13 | 90,467,265 - 90,508,932 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 13 | 94,990,249 - 95,030,030 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 13 | 88,076,522 - 88,117,020 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 13 | 88,265,405 - 88,305,900 (+) | NCBI | | | | | Celera | 13 | 84,158,259 - 84,198,512 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | q24 | NCBI | | | | |
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COPA (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 1 | 160,288,594 - 160,343,250 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 160,288,594 - 160,343,566 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 160,258,384 - 160,313,040 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 158,525,001 - 158,579,978 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 1 | 157,072,134 - 157,126,528 | NCBI | | | | | Celera | 1 | 133,327,140 - 133,382,113 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | q23.2 | NCBI | | | | | HuRef | 1 | 131,615,017 - 131,669,491 (-) | NCBI | | HuRef | | | CHM1_1 | 1 | 161,653,722 - 161,708,697 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 159,425,670 - 159,480,322 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Copa (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 171,909,885 - 171,949,899 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 171,910,096 - 171,949,897 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 172,082,529 - 172,122,332 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 172,082,529 - 172,122,330 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 174,012,660 - 174,052,463 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 173,919,478 - 173,958,999 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 174,936,820 - 174,976,641 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | H3 | NCBI | | | | | cM Map | 1 | 79.54 | NCBI | | | | |
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Copa (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955468 | 12,059,089 - 12,111,805 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955468 | 12,062,942 - 12,111,048 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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COPA (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 89,508,475 - 89,562,373 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 89,248,429 - 89,302,361 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 135,643,677 - 135,697,584 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 139,564,074 - 139,618,520 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 139,564,084 - 139,618,520 (-) | Ensembl | panpan1.1 | | panPan2 | |
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COPA (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 38 | 21,892,995 - 21,936,076 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 38 | 21,892,993 - 21,936,458 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 38 | 21,966,684 - 22,009,488 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 38 | 22,009,430 - 22,051,659 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 38 | 22,009,504 - 22,111,788 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 38 | 21,914,288 - 21,957,525 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 38 | 22,310,845 - 22,353,771 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 38 | 22,720,666 - 22,763,371 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Copa (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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COPA (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 4 | 90,141,216 - 90,193,389 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 4 | 90,142,629 - 90,191,743 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 4 | 98,033,388 - 98,082,167 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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COPA (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 20 | 3,605,903 - 3,658,555 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 20 | 3,606,293 - 3,659,402 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666038 | 2,663,913 - 2,716,287 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Copa (Heterocephalus glaber - naked mole-rat) |
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