Fcgr2a-ps1 (Fc gamma receptor 2A, pseudogene 1) - Rat Genome Database

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Gene: Fcgr2a-ps1 (Fc gamma receptor 2A, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Fcgr2a-ps1
Name: Fc gamma receptor 2A, pseudogene 1
RGD ID: 9127992
Description: Predicted to be located in membrane.
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC100912098; LOC103693683; LOC103694909; low affinity immunoglobulin gamma Fc region receptor III; low affinity immunoglobulin gamma Fc region receptor III-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Fcgr2a  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81385,855,437 - 85,868,827 (-)NCBIGRCr8
mRatBN7.21383,322,840 - 83,331,714 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01391,188,926 - 91,197,905 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01394,060,431 - 94,068,589 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map13q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1692135  


Genomics

Variants

.
Variants in Fcgr2a-ps1
70 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)137486211785581182Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_005492633
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81385,855,437 - 85,868,827 (-)NCBI
mRatBN7.21383,322,840 - 83,331,714 (-)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000067309.3
  ENSRNOP00000084073.1
  ENSRNOP00000090763.1
  ENSRNOP00000092014.1
Reference Protein Sequences
Protein Domains
Ig-like

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-17443 BioCyc
Ensembl Genes ENSRNOG00000046663 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071897.3 UniProtKB/TrEMBL
  ENSRNOT00000096032.1 UniProtKB/TrEMBL
  ENSRNOT00000097851.1 UniProtKB/TrEMBL
  ENSRNOT00000111401.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
NCBI Gene LOC103693683 ENTREZGENE
PANTHER IMMUNOGLOBULIN FC RECEPTOR UniProtKB/TrEMBL
  LOW AFFINITY IMMUNOGLOBULIN GAMMA FC REGION RECEPTOR II-A-RELATED UniProtKB/TrEMBL
  LOW AFFINITY IMMUNOGLOBULIN GAMMA FC REGION RECEPTOR III UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/TrEMBL
PhenoGen Fcgr2a-ps1 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046663 RatGTEx
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8I5ZYN3_RAT UniProtKB/TrEMBL
  A0A8I6AEQ9_RAT UniProtKB/TrEMBL
  A0A8I6GJ50_RAT UniProtKB/TrEMBL
  M0RCJ0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Fcgr2a-ps1  Fc gamma receptor 2A, pseudogene 1  LOC103693683  low affinity immunoglobulin gamma Fc region receptor III  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC103693683  low affinity immunoglobulin gamma Fc region receptor III  LOC103694909  low affinity immunoglobulin gamma Fc region receptor III-like  Data merged from RGD:9371869 737654 PROVISIONAL
2015-07-29 LOC103693683  low affinity immunoglobulin gamma Fc region receptor III  LOC100912098  low affinity immunoglobulin gamma Fc region receptor III-like  Data merged from RGD:6489160 737654 PROVISIONAL
2014-08-25 LOC103694909  low affinity immunoglobulin gamma Fc region receptor III-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2014-08-25 LOC103693683  low affinity immunoglobulin gamma Fc region receptor III      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100912098  low affinity immunoglobulin gamma Fc region receptor III-like      Symbol and Name status set to provisional 70820 PROVISIONAL