Kcnj9 (potassium inwardly-rectifying channel, subfamily J, member 9) - Rat Genome Database

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Gene: Kcnj9 (potassium inwardly-rectifying channel, subfamily J, member 9) Rattus norvegicus
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Symbol: Kcnj9
Name: potassium inwardly-rectifying channel, subfamily J, member 9
RGD ID: 621440
Description: Enables PDZ domain binding activity. Predicted to be involved in potassium ion import across plasma membrane; regulation of monoatomic ion transmembrane transport; and regulation of presynaptic membrane potential. Predicted to be part of monoatomic ion channel complex. Predicted to be active in parallel fiber to Purkinje cell synapse and presynaptic membrane. Orthologous to human KCNJ9 (potassium inwardly rectifying channel subfamily J member 9); INTERACTS WITH 6-propyl-2-thiouracil; acetamide; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: G protein-activated inward rectifier potassium channel 3; GIRK-3; Girk3; inward rectifier K(+) channel Kir3.3; inwardly rectifier K(+) channel Kir3.3; Kir3.3; potassium channel, inwardly rectifying subfamily J member 9; potassium channel, inwardly rectifying subfamily J, member 9; potassium voltage-gated channel subfamily J member 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81387,313,191 - 87,320,293 (-)NCBIGRCr8
mRatBN7.21384,780,826 - 84,787,928 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,779,741 - 84,787,928 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1387,284,139 - 87,291,241 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,684,415 - 88,691,517 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,868,710 - 85,875,816 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,703,046 - 90,710,148 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,703,036 - 90,710,287 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01395,224,229 - 95,231,331 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41388,311,500 - 88,318,875 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11388,500,392 - 88,507,759 (-)NCBI
Celera1384,391,114 - 84,398,216 (-)NCBICelera
RH 3.4 Map13561.5RGD
Cytogenetic Map13q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kcnj9Ratautoimmune interstitial lung, joint, and kidney disease  ISOKCNJ9 (Homo sapiens)8554872ClinVar Annotator: match by term: Autoimmune interstitial lung disease-arthritis syndromeClinVarPMID:28492532
Kcnj9RatEAST syndrome  ISOKCNJ9 (Homo sapiens)8554872ClinVar Annotator: match by term: EAST syndromeClinVarPMID:28492532
Kcnj9Ratfamilial hemiplegic migraine  ISOKCNJ9 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial hemiplegic migraineClinVarPMID:28492532
Kcnj9Ratgastrointestinal stromal tumor  ISOKCNJ9 (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
Kcnj9Ratparathyroid carcinoma  ISOKCNJ9 (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kcnj9Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOKcnj9 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of KCNJ9 mRNACTDPMID:24680724
Kcnj9Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of KCNJ9 mRNACTDPMID:30047161
Kcnj9Ratacetamide increases expressionEXP 6480464acetamide results in increased expression of KCNJ9 mRNACTDPMID:31881176
Kcnj9Rataflatoxin B1 decreases methylationISOKCNJ9 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of KCNJ9 geneCTDPMID:27153756
Kcnj9Ratall-trans-retinoic acid affects expressionISOKCNJ9 (Homo sapiens)6480464Tretinoin affects the expression of KCNJ9 mRNACTDPMID:31600526
Kcnj9Ratamitrole decreases expressionEXP 6480464Amitrole results in decreased expression of KCNJ9 mRNACTDPMID:30047161
Kcnj9Ratammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of KCNJ9 mRNACTDPMID:16483693
Kcnj9RatAzoxymethane multiple interactionsISOKcnj9 (Mus musculus)6480464[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of KCNJ9 mRNACTDPMID:29950665
Kcnj9Ratbenzo[a]pyrene affects methylationISOKCNJ9 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of KCNJ9 5' UTR and Benzo(a)pyrene affects the methylation of KCNJ9 promoterCTDPMID:27901495
Kcnj9Ratbenzo[a]pyrene multiple interactionsISOKCNJ9 (Homo sapiens)6480464[AHR gene mutant form affects the susceptibility to Benzo(a)pyrene] which results in decreased expression of KCNJ9 mRNACTDPMID:38036013
Kcnj9Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of KCNJ9 mRNACTDPMID:25181051
Kcnj9Ratbisphenol A decreases expressionISOKcnj9 (Mus musculus)6480464bisphenol A results in decreased expression of KCNJ9 mRNACTDPMID:32156529
Kcnj9Ratcadmium dichloride increases expressionISOKCNJ9 (Homo sapiens)6480464Cadmium Chloride results in increased expression of KCNJ9 mRNACTDPMID:38568856
Kcnj9Ratcopper atom increases expressionEXP 6480464Copper deficiency results in increased expression of KCNJ9 mRNACTDPMID:26033743
Kcnj9Ratcopper(0) increases expressionEXP 6480464Copper deficiency results in increased expression of KCNJ9 mRNACTDPMID:26033743
Kcnj9Ratcyclosporin A increases methylationISOKCNJ9 (Homo sapiens)6480464Cyclosporine results in increased methylation of KCNJ9 promoterCTDPMID:27989131
Kcnj9Ratcypermethrin decreases expressionEXP 6480464cypermethrin results in decreased expression of KCNJ9 mRNACTDPMID:22528246
Kcnj9Ratdextran sulfate multiple interactionsISOKcnj9 (Mus musculus)6480464[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of KCNJ9 mRNACTDPMID:29950665
Kcnj9Ratenzyme inhibitor multiple interactionsISOKCNJ9 (Homo sapiens)6480464[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of KCNJ9 proteinCTDPMID:23301498
Kcnj9Ratethanol affects splicingISOKcnj9 (Mus musculus)6480464Ethanol affects the splicing of KCNJ9 mRNACTDPMID:30319688

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Biological Process
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kcnj9Ratbiological_process  ND 159840706/2010: no relevant rat dataRGD 
Kcnj9Ratmonoatomic cation transmembrane transport involved_inIEAGO:00052421600115GO_REF:0000108GOCGO_REF:0000108
Kcnj9Ratmonoatomic cation transmembrane transport involved_inIEAGO:00154671600115GO_REF:0000108GOCGO_REF:0000108
Kcnj9Ratmonoatomic ion transmembrane transport involved_inIEAUniProtKB-KW:KW-0407 and UniProtKB-KW:KW-08511600115GO_REF:0000043UniProtGO_REF:0000043
Kcnj9Ratmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-04061600115GO_REF:0000043UniProtGO_REF:0000043
Kcnj9Ratpotassium ion import across plasma membrane involved_inIBAMGI:107501 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Kcnj9Ratpotassium ion transmembrane transport involved_inIEAGO:00154671600115GO_REF:0000108GOCGO_REF:0000108
Kcnj9Ratpotassium ion transmembrane transport involved_inIEAGO:00052421600115GO_REF:0000108GOCGO_REF:0000108
Kcnj9Ratpotassium ion transport involved_inIEAInterPro:IPR003276 and InterPro:IPR0164491600115GO_REF:0000002InterProGO_REF:0000002
Kcnj9Ratpotassium ion transport involved_inIEAUniProtKB-KW:KW-06331600115GO_REF:0000043UniProtGO_REF:0000043
Kcnj9Ratregulation of monoatomic ion transmembrane transport involved_inIBAMGI:1100508 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Kcnj9Ratregulation of presynaptic membrane potential involved_inIEAUniProtKB:P48543 and ensembl:ENSMUSP000000601101600115GO_REF:0000107EnsemblGO_REF:0000107
Kcnj9Ratregulation of presynaptic membrane potential involved_inISOKcnj9 (Mus musculus)1624291 PMID:10956667RGDPMID:10956667
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Cellular Component
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kcnj9Ratinward rectifier potassium channel complex part_ofISOKcnj9 (Mus musculus)1624291 PMID:10341034RGDPMID:10341034
Kcnj9Ratinward rectifier potassium channel complex part_ofIEAUniProtKB:P48543 and ensembl:ENSMUSP000000601101600115GO_REF:0000107EnsemblGO_REF:0000107
Kcnj9Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Kcnj9Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Kcnj9Ratmembrane located_inIEAInterPro:IPR003276 and InterPro:IPR0164491600115GO_REF:0000002InterProGO_REF:0000002
Kcnj9Ratmonoatomic ion channel complex part_ofIEAUniProtKB-KW:KW-08511600115GO_REF:0000043UniProtGO_REF:0000043
Kcnj9Ratparallel fiber to Purkinje cell synapse is_active_inISOKcnj9 (Mus musculus)1624291 PMID:19558451RGDPMID:19558451
Kcnj9Ratparallel fiber to Purkinje cell synapse is_active_inIEAUniProtKB:P48543 and ensembl:ENSMUSP000000601101600115GO_REF:0000107EnsemblGO_REF:0000107
Kcnj9Ratplasma membrane is_active_inIBAMGI:104742 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Kcnj9Ratpresynaptic membrane is_active_inIEAUniProtKB:P48543 and ensembl:ENSMUSP000000601101600115GO_REF:0000107EnsemblGO_REF:0000107
Kcnj9Ratpresynaptic membrane is_active_inISOKcnj9 (Mus musculus)1624291 PMID:19558451RGDPMID:19558451
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Molecular Function
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1 to 9 of 9 rows


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#
Reference Title
Reference Citation
1. Mechanism underlying selective regulation of G protein-gated inwardly rectifying potassium channels by the psychostimulant-sensitive sorting nexin 27. Balana B, etal., Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5831-6. doi: 10.1073/pnas.1018645108. Epub 2011 Mar 21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Axonal sorting of Kir3.3 defines a GABA-containing neuron in the CA3 region of rodent hippocampus. Grosse G, etal., Mol Cell Neurosci. 2003 Nov;24(3):709-24.
4. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
5. A unique sorting nexin regulates trafficking of potassium channels via a PDZ domain interaction. Lunn ML, etal., Nat Neurosci. 2007 Oct;10(10):1249-59. Epub 2007 Sep 2.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Subunit interactions in the assembly of neuronal Kir3.0 inwardly rectifying K+ channels. Wischmeyer E, etal., Mol Cell Neurosci. 1997;9(3):194-206.
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PMID:8670306   PMID:18698588   PMID:18755244   PMID:19558451   PMID:20610389  



Kcnj9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81387,313,191 - 87,320,293 (-)NCBIGRCr8
mRatBN7.21384,780,826 - 84,787,928 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,779,741 - 84,787,928 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1387,284,139 - 87,291,241 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,684,415 - 88,691,517 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,868,710 - 85,875,816 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,703,046 - 90,710,148 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,703,036 - 90,710,287 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01395,224,229 - 95,231,331 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41388,311,500 - 88,318,875 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11388,500,392 - 88,507,759 (-)NCBI
Celera1384,391,114 - 84,398,216 (-)NCBICelera
RH 3.4 Map13561.5RGD
Cytogenetic Map13q24NCBI
KCNJ9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,081,538 - 160,090,563 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,081,538 - 160,090,563 (+)EnsemblGRCh38hg38GRCh38
GRCh371160,051,328 - 160,060,353 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,317,984 - 158,325,836 (+)NCBINCBI36Build 36hg18NCBI36
Build 341156,864,432 - 156,872,285NCBI
Celera1133,120,144 - 133,127,996 (+)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1131,408,475 - 131,416,327 (+)NCBIHuRef
CHM1_11161,446,723 - 161,454,597 (+)NCBICHM1_1
T2T-CHM13v2.01159,218,495 - 159,227,640 (+)NCBIT2T-CHM13v2.0
Kcnj9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,148,075 - 172,156,889 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,148,068 - 172,156,885 (-)EnsemblGRCm39 Ensembl
GRCm381172,320,508 - 172,329,322 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,320,501 - 172,329,318 (-)EnsemblGRCm38mm10GRCm38
MGSCv371174,251,164 - 174,259,394 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361174,158,762 - 174,165,957 (-)NCBIMGSCv36mm8
Celera1175,174,591 - 175,182,663 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.66NCBI
Kcnj9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546811,868,535 - 11,877,298 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546811,868,358 - 11,877,298 (+)NCBIChiLan1.0ChiLan1.0
KCNJ9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,763,359 - 89,821,789 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1189,498,393 - 89,561,800 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,433,895 - 135,447,397 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11139,356,387 - 139,365,444 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1139,356,387 - 139,365,444 (+)Ensemblpanpan1.1panPan2
KCNJ9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13822,100,627 - 22,104,165 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3822,100,621 - 22,104,167 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3822,175,211 - 22,182,323 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03822,219,512 - 22,226,777 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3822,219,550 - 22,224,069 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13822,123,752 - 22,130,987 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03822,520,200 - 22,527,518 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,929,513 - 22,936,694 (-)NCBIUU_Cfam_GSD_1.0
Kcnj9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,209,368 - 6,218,113 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936740538,688 - 545,247 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936740536,397 - 545,137 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNJ9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl490,397,850 - 90,412,373 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1490,402,042 - 90,412,426 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,346,474 - 98,353,846 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNJ9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1203,853,906 - 3,913,049 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl203,856,705 - 3,860,665 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660382,912,803 - 2,920,292 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnj9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247941,159,930 - 1,170,838 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247941,161,336 - 1,171,321 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Kcnj9
23 total Variants

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:110
Interacting mature miRNAs:135
Transcripts:ENSRNOT00000010113
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1366451204106807694Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)137486211785581182Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133466346187525369Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat

1 to 10 of 23 rows
Kcnj9  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21384,781,313 - 84,781,487 (+)MAPPERmRatBN7.2
Rnor_6.01390,703,534 - 90,703,707NCBIRnor6.0
Rnor_5.01395,224,717 - 95,224,890UniSTSRnor5.0
Celera1384,391,602 - 84,391,775UniSTS
RH 3.4 Map13561.5UniSTS
Cytogenetic Map13q24UniSTS
G42052  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21384,784,420 - 84,784,649 (+)MAPPERmRatBN7.2
Rnor_6.01390,706,641 - 90,706,869NCBIRnor6.0
Rnor_5.01395,227,824 - 95,228,052UniSTSRnor5.0
RGSC_v3.41388,315,368 - 88,315,596UniSTSRGSC3.4
Celera1384,394,709 - 84,394,937UniSTS
Cytogenetic Map13q24UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 33 113 66 65 34 25 34 6 173 81 93 41 59 31



Ensembl Acc Id: ENSRNOT00000010113   ⟹   ENSRNOP00000010113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1384,780,835 - 84,787,928 (-)Ensembl
Rnor_6.0 Ensembl1390,703,055 - 90,710,148 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080638   ⟹   ENSRNOP00000071010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1384,779,741 - 84,787,928 (-)Ensembl
Rnor_6.0 Ensembl1390,703,036 - 90,710,287 (-)Ensembl
RefSeq Acc Id: NM_053834   ⟹   NP_446286
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81387,313,191 - 87,320,293 (-)NCBI
mRatBN7.21384,780,826 - 84,787,928 (-)NCBI
Rnor_6.01390,703,046 - 90,710,148 (-)NCBI
Rnor_5.01395,224,229 - 95,231,331 (-)NCBI
RGSC_v3.41388,311,500 - 88,318,875 (-)RGD
Celera1384,391,114 - 84,398,216 (-)RGD
Sequence:
Protein RefSeqs NP_446286 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB95433 (Get FASTA)   NCBI Sequence Viewer  
  EDL94707 (Get FASTA)   NCBI Sequence Viewer  
  EDL94708 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000010113.2
GenBank Protein Q63511 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446286   ⟸   NM_053834
- UniProtKB: Q63511 (UniProtKB/Swiss-Prot),   A6JG51 (UniProtKB/TrEMBL),   A0A0G2JZD9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071010   ⟸   ENSRNOT00000080638
Ensembl Acc Id: ENSRNOP00000010113   ⟸   ENSRNOT00000010113
Name Modeler Protein Id AA Range Protein Structure
AF-Q63511-F1-model_v2 AlphaFold Q63511 1-393 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-17324 BioCyc
Ensembl Genes ENSRNOG00000007645 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000010113.5 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot
  2.60.40.1400 UniProtKB/Swiss-Prot
InterPro Ig_E-set UniProtKB/Swiss-Prot
  IRK_C UniProtKB/Swiss-Prot
  K_chnl_inward-rec_Kir UniProtKB/Swiss-Prot
  K_chnl_inward-rec_Kir3.3 UniProtKB/Swiss-Prot
  K_chnl_inward-rec_Kir_cyto UniProtKB/Swiss-Prot
  Kir_TM UniProtKB/Swiss-Prot
KEGG Report rno:116560 UniProtKB/Swiss-Prot
NCBI Gene 116560 ENTREZGENE
PANTHER PTHR11767 UniProtKB/Swiss-Prot
  PTHR11767:SF17 UniProtKB/Swiss-Prot
Pfam IRK UniProtKB/Swiss-Prot
  IRK_C UniProtKB/Swiss-Prot
PhenoGen Kcnj9 PhenoGen
PIRSF GIRK_kir UniProtKB/Swiss-Prot
PRINTS KIR33CHANNEL UniProtKB/Swiss-Prot
  KIRCHANNEL UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000007645 RatGTEx
Superfamily-SCOP SSF81296 UniProtKB/Swiss-Prot
  Voltage-gated potassium channels UniProtKB/Swiss-Prot
UniProt A0A0G2JZD9 ENTREZGENE, UniProtKB/TrEMBL
  A6JG51 ENTREZGENE, UniProtKB/TrEMBL
  KCNJ9_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-19 Kcnj9  potassium inwardly-rectifying channel, subfamily J, member 9  Kcnj9  potassium voltage-gated channel subfamily J member 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-11 Kcnj9  potassium voltage-gated channel subfamily J member 9  Kcnj9  potassium channel, inwardly rectifying subfamily J, member 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-01-26 Kcnj9  potassium channel, inwardly rectifying subfamily J, member 9  Kcnj9  potassium inwardly-rectifying channel, subfamily J, member 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Kcnj9  potassium inwardly-rectifying channel, subfamily J, member 9      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Kcnj9  potassium inwardly-rectifying channel, subfamily J, member 9      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_expression expressed in brain 729079