Gas5 (growth arrest specific 5) - Rat Genome Database

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Gene: Gas5 (growth arrest specific 5) Rattus norvegicus
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Symbol: Gas5
Name: growth arrest specific 5
RGD ID: 621549
Description: Involved in negative regulation of miRNA transcription. Used to study cardiac arrest. Biomarker of cardiac arrest. Orthologous to human GAS5 (growth arrest specific 5); INTERACTS WITH (+)-schisandrin B; 3-chloropropane-1,2-diol; 3H-1,2-dithiole-3-thione.
Type: ncrna
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81375,836,963 - 75,840,284 (+)NCBIGRCr8
mRatBN7.21373,303,611 - 73,306,932 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1375,896,321 - 75,899,647 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01377,180,653 - 77,183,974 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01374,440,200 - 74,443,521 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01378,852,523 - 78,855,844 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01383,747,584 - 83,750,905 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41376,594,781 - 76,598,102 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11376,608,968 - 76,612,290 (+)NCBI
Celera1373,092,035 - 73,095,356 (+)NCBICelera
Cytogenetic Map13q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-alpha-phellandrene  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4-phenylbutyric acid  (ISO)
7,12-dimethyltetraphene  (EXP)
aflatoxin B1  (EXP,ISO)
alpha-phellandrene  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP)
benzo[b]fluoranthene  (ISO)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (EXP)
calcidiol  (EXP)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (EXP)
crotonaldehyde  (ISO)
DDT  (ISO)
dexamethasone  (EXP)
dicrotophos  (ISO)
diuron  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fipronil  (ISO)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
glyphosate  (EXP,ISO)
isoprenaline  (EXP,ISO)
leflunomide  (EXP,ISO)
lipopolysaccharide  (ISO)
maneb  (ISO)
methamphetamine  (EXP)
N,N-diethyl-m-toluamide  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
nefazodone  (EXP)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentachlorophenol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phorone  (EXP)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (ISO)
propofol  (ISO)
rac-lactic acid  (ISO)
reactive oxygen species  (ISO)
ribavirin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
succimer  (ISO)
superoxide  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Inhibition of long noncoding RNA growth arrest-specific 5 attenuates cerebral injury induced by deep hypothermic circulatory arrest in rats. Gao S, etal., J Thorac Cardiovasc Surg. 2019 Jan 25:S0022-5223(19)30260-0. doi: 10.1016/j.jtcvs.2019.01.050.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. The gas 5 gene shows four alternative splicing patterns without coding for a protein. Raho G, etal., Gene 2000 Oct 3;256(1-2):13-7.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23012479   PMID:27432865   PMID:28526319   PMID:29428721   PMID:30556886   PMID:30825202   PMID:31167125   PMID:31429119   PMID:31549370   PMID:31608710   PMID:31625671   PMID:31646590  
PMID:31751592   PMID:31799679   PMID:31878844   PMID:31985016   PMID:32008164   PMID:32308118   PMID:32634579   PMID:33010302   PMID:33313941   PMID:33638792   PMID:34098562   PMID:34718247  
PMID:35435104   PMID:36195691   PMID:38407972  


Genomics

Comparative Map Data
Gas5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81375,836,963 - 75,840,284 (+)NCBIGRCr8
mRatBN7.21373,303,611 - 73,306,932 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1375,896,321 - 75,899,647 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01377,180,653 - 77,183,974 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01374,440,200 - 74,443,521 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01378,852,523 - 78,855,844 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01383,747,584 - 83,750,905 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41376,594,781 - 76,598,102 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11376,608,968 - 76,612,290 (+)NCBI
Celera1373,092,035 - 73,095,356 (+)NCBICelera
Cytogenetic Map13q22NCBI
GAS5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381173,863,901 - 173,869,045 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1173,858,559 - 173,868,882 (-)EnsemblGRCh38hg38GRCh38
GRCh371173,833,037 - 173,838,020 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361172,099,662 - 172,103,748 (-)NCBINCBI36Build 36hg18NCBI36
Celera1146,942,508 - 146,946,594 (-)NCBICelera
Cytogenetic Map1q25.1NCBI
HuRef1145,057,994 - 145,062,080 (-)NCBIHuRef
CHM1_11175,255,480 - 175,259,566 (-)NCBICHM1_1
T2T-CHM13v2.01173,222,019 - 173,227,165 (-)NCBIT2T-CHM13v2.0
Gas5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,862,171 - 160,866,109 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,861,992 - 160,866,116 (+)EnsemblGRCm39 Ensembl
GRCm381161,034,601 - 161,038,539 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,034,422 - 161,038,539 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,965,297 - 162,968,668 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,871,843 - 162,875,214 (+)NCBIMGSCv36mm8
Celera1163,475,054 - 163,478,423 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.75NCBI

Variants

.
Variants in Gas5
6 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
2303028Bp329Blood pressure QTL 329arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135849787273485113Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)135949252277046890Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)136906051977046890Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat

Markers in Region
RH139822  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21373,306,656 - 73,306,870 (+)MAPPERmRatBN7.2
Rnor_6.01378,855,569 - 78,855,782NCBIRnor6.0
Rnor_5.01383,750,630 - 83,750,843UniSTSRnor5.0
RGSC_v3.41376,597,827 - 76,598,040UniSTSRGSC3.4
Celera1373,095,081 - 73,095,294UniSTS
Cytogenetic Map13q22UniSTS
PMC109273P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21373,303,485 - 73,303,872 (+)MAPPERmRatBN7.2
Rnor_6.01378,852,398 - 78,852,784NCBIRnor6.0
Rnor_5.01383,747,459 - 83,747,845UniSTSRnor5.0
RGSC_v3.41376,594,656 - 76,595,042UniSTSRGSC3.4
Celera1373,091,910 - 73,092,296UniSTS
Cytogenetic Map13q22UniSTS


Expression


Sequence


RefSeq Acc Id: NR_002704
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81375,836,963 - 75,840,284 (+)NCBI
mRatBN7.21373,303,611 - 73,306,932 (+)NCBI
Rnor_6.01378,852,523 - 78,855,844 (+)NCBI
Rnor_5.01383,747,584 - 83,750,905 (+)NCBI
RGSC_v3.41376,594,781 - 76,598,102 (+)RGD
Celera1373,092,035 - 73,095,356 (+)RGD
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621549 AgrOrtholog
BioCyc Gene G2FUF-17750 BioCyc
NCBI Gene 81714 ENTREZGENE
PhenoGen Gas5 PhenoGen
RNAcentral URS000075EBAE RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Gas5  growth arrest specific 5      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Gas5  growth arrest specific 5      Symbol and Name status set to provisional 70820 PROVISIONAL