Niban1 (niban apoptosis regulator 1) - Rat Genome Database

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Gene: Niban1 (niban apoptosis regulator 1) Rattus norvegicus
Analyze
Symbol: Niban1
Name: niban apoptosis regulator 1
RGD ID: 71088
Description: Predicted to be involved in regulation of protein metabolic process and response to endoplasmic reticulum stress. Predicted to be located in cytosol and plasma membrane. Orthologous to human NIBAN1 (niban apoptosis regulator 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fam129a; family with sequence similarity 129, member A; Niban
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81366,224,219 - 66,377,728 (+)NCBIGRCr8
mRatBN7.21363,674,240 - 63,827,748 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1363,674,171 - 63,827,729 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1366,287,539 - 66,433,831 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01367,565,074 - 67,711,810 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01364,821,661 - 64,968,197 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01368,949,665 - 69,101,600 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1368,949,665 - 69,101,588 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01373,927,637 - 74,076,144 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41366,467,073 - 66,620,137 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11366,481,152 - 66,634,217 (+)NCBI
Celera1363,599,277 - 63,749,201 (+)NCBICelera
Cytogenetic Map13q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bicalutamide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
clotrimazole  (EXP)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (EXP,ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
enniatin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethylparaben  (ISO)
etoposide  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hydroquinone  (ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
ketoconazole  (EXP)
L-methionine  (ISO)
lamivudine  (ISO)
lucanthone  (ISO)
manganese(II) chloride  (EXP)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
nicotine  (ISO)
paracetamol  (EXP)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
sulindac sulfide  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tebuconazole  (ISO)
temozolomide  (ISO)
Tesaglitazar  (EXP)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
trichloroethene  (EXP)
Triptolide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zidovudine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO,ISS)
cytosol  (IEA,ISO)
plasma membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. A novel gene "Niban" upregulated in renal carcinogenesis: cloning by the cDNA-amplified fragment length polymorphism approach. Majima S, etal., Jpn J Cancer Res 2000 Sep;91(9):869-74.
2. Gene Data Set MGD Curation, June 12, 2002
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16949643   PMID:17588536   PMID:19199708   PMID:19946888   PMID:23533145  


Genomics

Comparative Map Data
Niban1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81366,224,219 - 66,377,728 (+)NCBIGRCr8
mRatBN7.21363,674,240 - 63,827,748 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1363,674,171 - 63,827,729 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1366,287,539 - 66,433,831 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01367,565,074 - 67,711,810 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01364,821,661 - 64,968,197 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01368,949,665 - 69,101,600 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1368,949,665 - 69,101,588 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01373,927,637 - 74,076,144 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41366,467,073 - 66,620,137 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11366,481,152 - 66,634,217 (+)NCBI
Celera1363,599,277 - 63,749,201 (+)NCBICelera
Cytogenetic Map13q21NCBI
NIBAN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381184,791,032 - 184,974,508 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1184,790,724 - 184,974,508 (-)EnsemblGRCh38hg38GRCh38
GRCh371184,760,166 - 184,943,640 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361183,026,789 - 183,210,305 (-)NCBINCBI36Build 36hg18NCBI36
Build 341181,491,824 - 181,675,339NCBI
Celera1157,871,147 - 158,054,385 (-)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1155,995,721 - 156,179,017 (-)NCBIHuRef
CHM1_11186,182,688 - 186,365,427 (-)NCBICHM1_1
T2T-CHM13v2.01184,154,228 - 184,331,389 (-)NCBIT2T-CHM13v2.0
Niban1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391151,447,215 - 151,597,690 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1151,446,937 - 151,597,690 (+)EnsemblGRCm39 Ensembl
GRCm381151,571,373 - 151,721,432 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1151,571,186 - 151,721,939 (+)EnsemblGRCm38mm10GRCm38
MGSCv371153,418,503 - 153,566,477 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361153,333,752 - 153,481,254 (+)NCBIMGSCv36mm8
Celera1153,991,857 - 154,144,552 (+)NCBICelera
Cytogenetic Map1G1- G2NCBI
cM Map164.21NCBI
Niban1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540623,437,430 - 23,523,307 (-)NCBIChiLan1.0ChiLan1.0
NIBAN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2164,749,714 - 64,926,716 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,432,803 - 64,610,274 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,320,707 - 160,497,649 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,475,271 - 164,651,377 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,479,202 - 164,581,494 (-)Ensemblpanpan1.1panPan2
NIBAN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1718,021,782 - 18,234,759 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl718,024,578 - 18,235,236 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha717,606,389 - 17,819,053 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0717,755,746 - 17,967,535 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl717,758,289 - 17,967,642 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1717,663,647 - 17,818,513 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0717,772,001 - 17,984,763 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0717,902,539 - 18,115,903 (-)NCBIUU_Cfam_GSD_1.0
Niban1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934487,331,860 - 87,472,938 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364815,178,617 - 5,319,698 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364815,178,595 - 5,319,681 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIBAN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9126,007,493 - 126,172,579 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19126,007,493 - 126,172,579 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29138,453,586 - 138,618,115 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NIBAN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12544,410,245 - 44,582,260 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2544,410,318 - 44,585,424 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605545,620,302 - 45,794,376 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Niban1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248148,600,129 - 8,795,038 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Niban1
1146 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:84
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000003320
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)135949252277046890Rat
2303028Bp329Blood pressure QTL 329arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135849787273485113Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 6 13 1 19 1 7 10 7 19 11 7
Low 37 44 40 40 1 1 54 28 22 1
Below cutoff 20

Sequence


RefSeq Acc Id: ENSRNOT00000003320   ⟹   ENSRNOP00000003320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1363,674,237 - 63,827,729 (+)Ensembl
Rnor_6.0 Ensembl1368,949,665 - 69,101,588 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110589   ⟹   ENSRNOP00000078571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1363,674,171 - 63,823,984 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112956   ⟹   ENSRNOP00000087560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1363,674,171 - 63,795,809 (+)Ensembl
RefSeq Acc Id: NM_022242   ⟹   NP_071578
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81366,224,219 - 66,374,753 (+)NCBI
mRatBN7.21363,674,240 - 63,824,773 (+)NCBI
Rnor_6.01368,949,665 - 69,101,600 (+)NCBI
Rnor_5.01373,927,637 - 74,076,144 (+)NCBI
RGSC_v3.41366,467,073 - 66,620,137 (+)RGD
Celera1363,599,277 - 63,749,201 (+)RGD
Sequence:
RefSeq Acc Id: XM_039091055   ⟹   XP_038946983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81366,343,019 - 66,377,728 (+)NCBI
mRatBN7.21363,793,023 - 63,827,748 (+)NCBI
RefSeq Acc Id: NP_071578   ⟸   NM_022242
- UniProtKB: Q9ESN0 (UniProtKB/Swiss-Prot),   A6ICS8 (UniProtKB/TrEMBL),   A0A8I5ZNB0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000003320   ⟸   ENSRNOT00000003320
RefSeq Acc Id: XP_038946983   ⟸   XM_039091055
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000087560   ⟸   ENSRNOT00000112956
RefSeq Acc Id: ENSRNOP00000078571   ⟸   ENSRNOT00000110589

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ESN0-F1-model_v2 AlphaFold Q9ESN0 1-937 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698886
Promoter ID:EPDNEW_R9411
Type:multiple initiation site
Name:Fam129a_1
Description:family with sequence similarity 129, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01368,949,630 - 68,949,690EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:71088 AgrOrtholog
BioCyc Gene G2FUF-17928 BioCyc
Ensembl Genes ENSRNOG00000002403 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055019228 UniProtKB/Swiss-Prot
  ENSRNOG00060016026 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000003320 ENTREZGENE
  ENSRNOT00000003320.7 UniProtKB/Swiss-Prot
  ENSRNOT00000110589.1 UniProtKB/TrEMBL
  ENSRNOT00000112956.1 UniProtKB/TrEMBL
  ENSRNOT00055032817 UniProtKB/Swiss-Prot
  ENSRNOT00060027464 UniProtKB/Swiss-Prot
InterPro Niban-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:63912 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 63912 ENTREZGENE
PANTHER PROTEIN NIBAN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14392 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Niban1 PhenoGen
RatGTEx ENSRNOG00000002403 RatGTEx
  ENSRNOG00055019228 RatGTEx
  ENSRNOG00060016026 RatGTEx
UniProt A0A8I5ZNB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GG41_RAT UniProtKB/TrEMBL
  A6ICS8 ENTREZGENE, UniProtKB/TrEMBL
  NIBAN_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-29 Niban1  niban apoptosis regulator 1  Fam129a  family with sequence similarity 129, member A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-02-23 Fam129a  family with sequence similarity 129, member A  Niban  niban protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-07-09 Niban  niban protein      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference