Angptl1 (angiopoietin-like 1) - Rat Genome Database

Name: Angptl1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Angptl1 (angiopoietin-like 1) Rattus norvegicus

Analyze

Symbol:

Angptl1

Name:

angiopoietin-like 1

RGD ID:

1598128

Description:

Predicted to enable signaling receptor binding activity. Predicted to be involved in transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Orthologous to human ANGPTL1 (angiopoietin like 1); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

angiopoietin-related protein 1; LOC679942; similar to angiopoietin-like 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ANGPTL1 (angiopoietin like 1)	HGNC	Ensembl, NCBI, OrthoDB
Mus musculus (house mouse):	Angptl1 (angiopoietin-like 1)	HGNC	NCBI, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Angptl1 (angiopoietin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ANGPTL1 (angiopoietin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ANGPTL1 (angiopoietin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Angptl1 (angiopoietin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ANGPTL1 (angiopoietin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ANGPTL1 (angiopoietin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Angptl1 (angiopoietin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ANGPTL1 (angiopoietin like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|sonicParanoid)
Mus musculus (house mouse):	Angptl1 (angiopoietin-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|sonicParanoid)
Danio rerio (zebrafish):	angptl1b (angiopoietin-like 1b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	angptl1a (angiopoietin-like 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|sonicParanoid)
Caenorhabditis elegans (roundworm):	C49C8.5	Alliance	DIOPT (InParanoid\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	68,963,198 - 68,969,742 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	13	68,962,991 - 68,992,570 (+)	Ensembl
Rnor_6.0	13	74,456,487 - 74,463,031 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	74,410,010 - 74,474,681 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	79,376,764 - 79,383,308 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	72,039,198 - 72,045,772 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	13	68,826,260 - 68,832,804 (+)	NCBI		Celera
Cytogenetic Map	13	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

1q24 Deletion Syndrome (ISO)

gastrointestinal stromal tumor (ISO)

parathyroid carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

8-Br-cAMP (ISO)

acrylamide (EXP)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bromobenzene (EXP)

buta-1,3-diene (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

dioxygen (EXP)

doxorubicin (ISO)

endosulfan (EXP)

folic acid (ISO)

geldanamycin (ISO)

genistein (ISO)

indometacin (ISO)

lead diacetate (ISO)

leflunomide (ISO)

mancozeb (ISO)

nickel atom (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

progesterone (ISO)

rac-lactic acid (ISO)

rofecoxib (ISO)

sodium fluoride (ISO)

testosterone (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

urethane (ISO)

valproic acid (ISO)

vanadyl sulfate (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

transmembrane receptor protein tyrosine kinase signaling pathway (IBA,ISO)

Cellular Component

collagen-containing extracellular matrix (IBA)

extracellular space (IBA,ISO)

Molecular Function

signaling receptor binding (IBA,ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10025962	PMID:10051567	PMID:19199708	PMID:19786610

Genomics

Comparative Map Data

Angptl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	68,963,198 - 68,969,742 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	13	68,962,991 - 68,992,570 (+)	Ensembl
Rnor_6.0	13	74,456,487 - 74,463,031 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	74,410,010 - 74,474,681 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	79,376,764 - 79,383,308 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	72,039,198 - 72,045,772 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	13	68,826,260 - 68,832,804 (+)	NCBI		Celera
Cytogenetic Map	13	q22	NCBI

ANGPTL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	178,849,535 - 178,871,077 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	178,849,535 - 178,871,077 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	178,818,670 - 178,840,212 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	177,085,293 - 177,106,838 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	175,550,327 - 175,571,872	NCBI
Celera	1	151,927,509 - 151,949,057 (-)	NCBI
Cytogenetic Map	1	q25.2	NCBI
HuRef	1	150,046,286 - 150,067,817 (-)	NCBI		HuRef
CHM1_1	1	180,242,420 - 180,263,935 (-)	NCBI		CHM1_1

Angptl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	156,666,593 - 156,688,648 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	1	156,666,132 - 156,688,648 (+)	Ensembl
GRCm38	1	156,839,023 - 156,861,078 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	156,838,562 - 156,861,078 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	158,769,154 - 158,791,209 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	1	158,675,700 - 158,697,755 (+)	NCBI			mm8
Celera	1	159,236,183 - 159,256,091 (+)	NCBI		Celera
Cytogenetic Map	1	G3	NCBI

Angptl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	18,203,310 - 18,224,789 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	18,160,164 - 18,224,822 (-)	NCBI	ChiLan1.0	ChiLan1.0

ANGPTL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	158,030,657 - 158,052,089 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	158,030,657 - 158,052,089 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	154,339,139 - 154,360,540 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ANGPTL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	20,919,192 - 20,945,140 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	20,919,214 - 20,940,792 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	20,445,917 - 20,467,496 (+)	NCBI
ROS_Cfam_1.0	7	20,658,122 - 20,682,799 (+)	NCBI
ROS_Cfam_1.0 Ensembl	7	20,658,125 - 20,684,039 (+)	Ensembl
UMICH_Zoey_3.1	7	20,565,042 - 20,586,622 (+)	NCBI
UNSW_CanFamBas_1.0	7	20,673,117 - 20,694,703 (+)	NCBI
UU_Cfam_GSD_1.0	7	20,808,240 - 20,829,825 (+)	NCBI

Angptl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	92,201,783 - 92,224,286 (+)	NCBI
SpeTri2.0	NW_004936481	10,048,439 - 10,071,035 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ANGPTL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	120,654,075 - 120,680,494 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	120,656,313 - 120,684,313 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	132,389,252 - 132,413,525 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ANGPTL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	50,468,283 - 50,489,283 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	25	50,468,826 - 50,490,343 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666055	51,997,890 - 52,019,658 (+)	NCBI	Vero_WHO_p1.0

Angptl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624771	3,465,761 - 3,486,141 (+)	NCBI	HetGla_female_1.0		hetGla2

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303028	Bp329	Blood pressure QTL 329			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	58497872	73485113	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	31241331	93395974	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	46197976	84753113	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39754544	84754544	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	32284471	77284471	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	59492522	77046890	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	37415584	82415584	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	46088046	91088046	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	59874408	85581182	Rat
1641901	Alcrsp6	Alcohol response QTL 6			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	13	52362171	97362171	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	65103704	106807694	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	65103704	106807694	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	56056920	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	38433408	83433408	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34535218	79535218	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	37415584	80753406	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
12879444	Bp397	Blood pressure QTL 397			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45049404	90049404	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	61825626	106807694	Rat
12879441	Bp396	Blood pressure QTL 396			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45699983	90699983	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45514719	90514719	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	37262092	82262092	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	22
Count of miRNA genes:	19
Interacting mature miRNAs:	21
Transcripts:	ENSRNOT00000065801
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		13	8		16		6	7			16	3	6
Low	3	30	23	15	3	15	2	4	64	35	23	8	2
Below cutoff			26	26		26			10		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001402356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000065801 ⟹ ENSRNOP00000059194

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	68,962,991 - 68,980,095 (+)	Ensembl
Rnor_6.0 Ensembl	13	74,456,487 - 74,463,031 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079152 ⟹ ENSRNOP00000073625

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	68,962,991 - 68,992,570 (+)	Ensembl
Rnor_6.0 Ensembl	13	74,410,010 - 74,474,681 (+)	Ensembl

RefSeq Acc Id:

NM_001109383 ⟹ NP_001102853

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	68,963,198 - 68,969,742 (+)	NCBI
Rnor_6.0	13	74,456,487 - 74,463,031 (+)	NCBI
Rnor_5.0	13	79,376,764 - 79,383,308 (+)	NCBI
RGSC_v3.4	13	72,039,198 - 72,045,772 (+)	RGD
Celera	13	68,826,260 - 68,832,804 (+)	RGD

Sequence:

show sequence

GTGGACAGTCTGTCGGCTGCAGCGGGTCACTGCCTTTCCCCACGCAGCAGACAGCACAGGCACA
ATGCCTTCTCGGCTGCATTAGAGAAAGTCCACAGTCACAAATTACATAGGTGGCCCAACAATTC
AGTCAATCGGTGCTGCAAAGAGACGTTCCTTACTGCCTGGATTCACCGGTCAGAACAAAAATGC
AGTTACCACTGAAGTCAGAGACGAACAAACTTCCACACTGATCTCAGAGAGCTCGGCAAGGACG
CAAGCTCACGGACACGCTTTTTTCAACACCAAAGACGCTGTGGTAGAATTCACTTCAAAATGAA
GACTTTTGTCTGGATCCTAAGTGTGGTACTCTTCCTACTGGGCATTGGTCACTGCAAAGGAGGA
CAATTCAAAATAAAAAAAACAACCCAAAGGAGATATCCCCGTGCTACAGATGGTAAAGAGGAAA
CAAAGAAATGTTCATATACATTCTTGGTACCCGAACAGAAAATAACAGGGCCAATCTGTGTCAA
CACCAAAGGTCAGGATGCGGGCACTATTAAAGACATGATCACCAGGATGGACCTTGAGAACCTG
AAGGATGTGCTCTCTAGGCAGAAACGAGAGATAGATGTCCTGCAGCTGGTGGTGGATGTGGATG
GGAACATTGTGAATGAGGTGAAGCTGCTGAGAAAGGAGAGCCGGAACATGAACTCCAGAGTCAC
TCAACTCTATATGCAGCTACTACATGAGATCATCCGTAAGAGAGATAACTCACTCGAACTTTCC
CAGCTGGAAAACAAAATCCTCAATGTCACCACAGAAATGCTCAAGATGGCAACACGATACCGGG
AGCTAGAGGTGAAATATGCTTCCTTGACTGATCTTGTCAATAACCAGTCTGTGATGATCACTGT
ACTGGAAGAGCAGTGCTTGAGGCTATTTTCCCGACAAGACCCCCACGTGTCTCCCCCTCTTGTC
CAGGTGGTACCACGACACATTCCTAACAGCCACCAGGACACCCCTGGTCTGCTGGCAGGCAATG
AGATACAGAGGGATCCAGGTTATCCCAGAGACTTAATGCCACCACCTGATCTGGCAACAGCTCC
CACAAAAAGCCCTTTCAAGATTCCAGCAGTGACTTTCATCAATGAAGGTGAGTTACCGTTTCCT
GGTCAATGGAAGAACGAAGCTGCCATGCTGTACAATCCATGCGACAATACTCTTAGAACGTCCT
AGTTCTTATGTGCTGATGTCACGCTCAACCAAAACATCACTTTCTAAAGTAATATTAGGATTTG
ATATAAAAGATCTCTTTTCTCCCTGC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102853	(Get FASTA)	NCBI Sequence Viewer
	NP_001389285	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM09476	(Get FASTA)	NCBI Sequence Viewer
	EDM09477	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001102853 ⟸ NM_001109383

- Peptide Label:

precursor

- Sequence:

show sequence

MKTFVWILSVVLFLLGIGHCKGGQFKIKKTTQRRYPRATDGKEETKKCSYTFLVPEQKITGPIC
VNTKGQDAGTIKDMITRMDLENLKDVLSRQKREIDVLQLVVDVDGNIVNEVKLLRKESRNMNSR
VTQLYMQLLHEIIRKRDNSLELSQLENKILNVTTEMLKMATRYRELEVKYASLTDLVNNQSVMI
TVLEEQCLRLFSRQDPHVSPPLVQVVPRHIPNSHQDTPGLLAGNEIQRDPGYPRDLMPPPDLAT
APTKSPFKIPAVTFINEGELPFPGQWKNEAAMLYNPCDNTLRTS

hide sequence

RefSeq Acc Id:

ENSRNOP00000073625 ⟸ ENSRNOT00000079152

RefSeq Acc Id:

ENSRNOP00000059194 ⟸ ENSRNOT00000065801

Protein Domains

Fibrinogen C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K603-F1-model_v2	AlphaFold	A0A0G2K603	1-490	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698917

Promoter ID:

EPDNEW_R9442

Type:

initiation region

Name:

Angptl1_1

Description:

angiopoietin-like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	74,456,493 - 74,456,553	EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)

ACI/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Damaging Variants

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
13	74462138	74462139	G	T	snv	CDR, SBN/Ygl (RGD), SBN/Ygl (MCW)
13	74462150	74462151	G	C	snv	SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019)
13	74462153	74462154	C	T	snv	WN/N (2020), ACI/EurMcwi (2019), WKY/NCrl (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), PVG/Seac (2019), MWF/Hsd (2019), MR/N (2020), HXB20/IpcvMcwi (2020), HXB10/IpcvMcwi (2019), FHH/EurMcwi (2019), F344/Stm (2019), F344/N (2020), F344/DuCrl (2019), DA/OlaHsd (2019), BXH3/CubMcwi (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), WKY/N (2020)
13	74462183	74462184	G	A	snv	WKY/N (2020), WN/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), SHR/OlalpcvMcwi (2019), PVG/Seac (2019), M520/N (2020), HXB10/IpcvMcwi (2019), FHH/EurMcwi (2019), F344/Stm (2019), BXH3/CubMcwi (2020), ACI/EurMcwi (2019), SHRSP/Gcrc (RGD), SS/JrHsdMcwi (MCW), GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW)
13	74462191	74462192	A	G	snv	ACI/EurMcwi (MCW), WN/N (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), SHRSP/Gcrc (RGD), BXH3/CubMcwi (2020), FHH/EurMcwi (2019), HXB10/IpcvMcwi (2019), M520/N (2020), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), COP/CrCrl (MCW & UW)
13	74462276	74462277	T	A	snv	WKY/NCrl (2019), WKY/N (2020), SHR/OlalpcvMcwi (2019), HXB4/IpcvMcwi (2020), HXB20/IpcvMcwi (2020), HXB10/IpcvMcwi (2019), FXLE16/Stm (2020), F344/NCrl (2019), ACI/N (2020), SS/JrHsdMcwi (MCW), GH/OmrMcwi (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), SS/JrHsdMcwi (2019)
13	74462287	74462288	G	T	snv	WKY/NCrl (2019), WKY/N (2020), SS/JrHsdMcwi (2019), SHR/OlalpcvMcwi (2019), HXB4/IpcvMcwi (2020), HXB20/IpcvMcwi (2020), HXB10/IpcvMcwi (2019), FXLE16/Stm (2020), F344/NCrl (2019), ACI/N (2020), WKY/NHsd (RGD), LEW/Crl (RGD), SS/JrHsdMcwi (MCW), GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)
13	74462305	74462306	G	C	snv	FXLE16/Stm (2020), F344/NCrl (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), M520/N (2020), SHRSP/A3NCrl (2019), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), WKY/NCrl (RGD), WKY/NHsd (RGD), ACI/N (2020), DA/OlaHsd (2019), HXB20/IpcvMcwi (2020)
13	74462333	74462334	T	C	snv	ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), BBDP/Wor (RGD), ACI/N (2020), DA/OlaHsd (2019), F344/NCrl (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020)
13	74462345	74462346	A	C	snv	LEW/Crl (2019), HXB4/IpcvMcwi (2020), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), BBDP/Wor (RGD), SHRSP/Gcrc (RGD), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), M520/NRrrcMcwi (2019)
13	74462351	74462352	T	C	snv	ACI/EurMcwi (MCW), WN/N (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), M520/N (MCW), BBDP/Wor (RGD), SHRSP/Gcrc (RGD), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), COP/CrCrl (MCW & UW)
13	74462356	74462357	G	A	snv	ACI/EurMcwi (MCW), WN/N (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), BBDP/Wor (RGD), SHRSP/Gcrc (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FXLE16/Stm (2020), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), WKY/NCrl (2019), WKY/N (2020), COP/CrCrl (MCW & UW)
13	74462399	74462400	A	G	snv	ACI/EurMcwi (MCW), WN/N (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), F344/NCrl (RGD), LEW/Crl (RGD), LEW/NCrlBR (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), WKY/Gcrc (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF3/Stm (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), COP/CrCrl (MCW & UW)
13	74462408	74462409	G	A	snv	ACI/EurMcwi (MCW), WN/N (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), F344/NCrl (RGD), LEW/Crl (RGD), LEW/NCrlBR (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), WKY/Gcrc (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF3/Stm (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), COP/CrCrl (MCW & UW)
13	74462433	74462434	A	T	snv	F344/NCrl (RGD), LEW/NCrlBR (RGD), SHRSP/Gcrc (RGD), BXH3/CubMcwi (2020), F344/N (2020), M520/N (2020), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW)
13	74462452	74462453	C	T	snv	WN/N (2020), WAG/RijCrl (2020), SHR/OlalpcvMcwi (2019), M520/N (2020), LEW/Crl (2019), BBDP/Wor (RGD), F344/N (2020), WKY/NCrl (RGD), SHRSP/Gcrc (RGD), LEW/NCrlBR (RGD), F344/NCrl (RGD), F344/Stm (2019)
13	74462453	74462454	A	G	snv	WAG/RijCrl (2020), WN/N (2020), SHR/OlalpcvMcwi (2019), M520/N (2020), LEW/Crl (2019), F344/Stm (2019), F344/N (2020), WKY/NCrl (RGD), SHRSP/Gcrc (RGD), LEW/NCrlBR (RGD), F344/NCrl (RGD), BBDP/Wor (RGD)
13	74462474	74462475	A	G	snv	ACI/EurMcwi (RGD), F344/NCrl (RGD), LEW/NCrlBR (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), WN/N (2020), F344/Stm (2019), LEW/Crl (2019), M520/N (2020), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), F344/N (2020)
13	74462485	74462486	G	A	snv	ACI/EurMcwi (RGD), F344/NCrl (RGD), LEW/NCrlBR (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), F344/N (2020), F344/Stm (2019), LEW/Crl (2019), M520/N (2020), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WN/N (2020)
13	74462486	74462487	A	G	snv	ACI/EurMcwi (RGD), F344/NCrl (RGD), LEW/NCrlBR (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), WN/N (2020), F344/Stm (2019), LEW/Crl (2019), M520/N (2020), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), F344/N (2020)
13	74462537	74462538	A	T	snv	ACI/EurMcwi (MCW), WN/N (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), LEW/NCrlBR (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), ACI/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF3/Stm (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), COP/CrCrl (MCW & UW)
13	74462554	74462555	C	T	snv	ACI/EurMcwi (MCW), WN/N (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), LEW/NCrlBR (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), ACI/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF3/Stm (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), COP/CrCrl (MCW & UW)
13	74462598	74462599	T	A	snv	M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), WN/N (MCW), LEW/NCrlBR (RGD), SHRSP/Gcrc (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF3/Stm (2020)
13	74462672	74462673	C	T	snv	WKY/N (2020), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), LEXF3/Stm (2020), MR/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020)
13	74462692	74462693	G	C	snv	ACI/EurMcwi (MCW), WKY/N (2020), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), LEXF3/Stm (2020), HXB2/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB10/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE16/Stm (2020), FHH/EurMcwi (2019), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), DA/OlaHsd (2019), BXH2/CubMcwi (2020), ACI/EurMcwi (2019), F344/NCrl (RGD), SS/JrHsdMcwi (MCW), WN/N (2020), FHH/EurMcwi (MCW)
13	74462695	74462696	C	T	snv	WN/N (2020), ACI/EurMcwi (MCW), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), LEXF3/Stm (2020), HXB2/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB10/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE16/Stm (2020), FHH/EurMcwi (2019), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), DA/OlaHsd (2019), BXH2/CubMcwi (2020), ACI/EurMcwi (2019), SS/JrHsdMcwi (MCW), WKY/N (2020)
13	74462735	74462736	T	C	snv	FXLE16/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEXF3/Stm (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019)
13	74462762	74462763	A	T	snv	ACI/EurMcwi (MCW), WKY/N (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (RGD), SHRSP/Gcrc (RGD), F344/DuCrl (2019), F344/NCrl (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), M520/N (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), COP/CrCrl (MCW & UW)
13	74462773	74462774	C	A	snv	ACI/EurMcwi (MCW), WN/N (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (RGD), SHRSP/Gcrc (RGD), WKY/Gcrc (RGD), ACI/EurMcwi (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), COP/CrCrl (MCW & UW)
13	74462798	74462799	A	G	snv	ACI/EurMcwi (MCW), WN/N (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (RGD), SHRSP/Gcrc (RGD), WKY/Gcrc (RGD), ACI/EurMcwi (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), COP/CrCrl (MCW & UW)

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
13	79382415	79382416	G	T	snv	SBN/Ygl (MCW), SBN/Ygl (KNAW), BDIX/NemOda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), KFRS3B/Kyo (KyushuU)
13	79382427	79382428	G	C	snv	NIG-III/Hok (KyushuU), DOB/Oda (KyushuU), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
13	79382430	79382431	C	T	snv	LE/OrlBarth (UDEL), NIG-III/Hok (KyushuU), DOB/Oda (KyushuU), SDLEF7/Barth (UDEL)
13	79382460	79382461	G	A	snv	NIG-III/Hok (KyushuU), LE/OrlBarth (UDEL)
13	79382468	79382469	A	G	snv	DOB/Oda (KyushuU), NIG-III/Hok (KyushuU), LE/OrlBarth (UDEL), LEC/Tj (KyushuU)
13	79382553	79382554	T	A	snv	HTX/Kyo (KyushuU), ZF (KyushuU), DOB/Oda (KyushuU), NIG-III/Hok (KyushuU)
13	79382564	79382565	G	T	snv	DOB/Oda (KyushuU), ZF (KyushuU), NIG-III/Hok (KyushuU)
13	79382582	79382583	G	C	snv	ZF (KyushuU), DOB/Oda (KyushuU), BDIX/NemOda (KyushuU), NIG-III/Hok (KyushuU)
13	79382610	79382611	T	C	snv	LEC/Tj (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), NIG-III/Hok (KyushuU), HTX/Kyo (KyushuU)
13	79382622	79382623	A	C	snv	LE/OrlBarth (UDEL)
13	79382628	79382629	T	C	snv	LE/OrlBarth (UDEL), NIG-III/Hok (KyushuU), HTX/Kyo (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU)
13	79382633	79382634	G	A	snv	SDLEF7/Barth (UDEL), BDIX.Cg-Tal/NemOda (KyushuU), BDIX/NemOda (KyushuU), LEC/Tj (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU), LE/OrlBarth (UDEL)
13	79382676	79382677	A	G	snv	BDIX.Cg-Tal/NemOda (KyushuU), DOB/Oda (KyushuU), HWY/Slc (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), NIG-III/Hok (KyushuU), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL)
13	79382685	79382686	G	A	snv	DOB/Oda (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), HWY/Slc (KyushuU), F344/Stm (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), NIG-III/Hok (KyushuU), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), RCS/Kyo (KyushuU)
13	79382710	79382711	A	T	snv	SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), BDIX.Cg-Tal/NemOda (KyushuU), DOB/Oda (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), HWY/Slc (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU)
13	79382729	79382730	C	T	snv	HTX/Kyo (KyushuU)
13	79382730	79382731	A	G	snv	HTX/Kyo (KyushuU)
13	79382742	79382743	G	A	snv	HTX/Kyo (KyushuU), NIG-III/Hok (KyushuU)
13	79382751	79382752	A	G	snv	HTX/Kyo (KyushuU), NIG-III/Hok (KyushuU)
13	79382762	79382763	G	A	snv	HTX/Kyo (KyushuU)
13	79382763	79382764	A	G	snv	HTX/Kyo (KyushuU)
13	79382814	79382815	A	T	snv	ZFDM (KyushuU), SDLEF7/Barth (UDEL), BDIX.Cg-Tal/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX/NemOda (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), HWY/Slc (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), NIG-III/Hok (KyushuU), LE/OrlBarth (UDEL), ZF (KyushuU)
13	79382831	79382832	C	T	snv	ZF (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX/NemOda (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), HWY/Slc (KyushuU), F344/Stm (KyushuU), RCS/Kyo (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), NIG-III/Hok (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL), ZFDM (KyushuU), SDLEF7/Barth (UDEL)
13	79382875	79382876	T	A	snv	SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), ZF (KyushuU), ZFDM (KyushuU)
13	79382949	79382950	C	T	snv	F344/NSlc (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), LEC/Tj (KyushuU), RCS/Kyo (KyushuU)
13	79382969	79382970	G	C	snv	F344/NSlc (KyushuU), RCS/Kyo (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), NIG-III/Hok (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU)
13	79382972	79382973	C	T	snv	LEC/Tj (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), HWY/Slc (KyushuU), RCS/Kyo (KyushuU), NIG-III/Hok (KyushuU)
13	79383012	79383013	T	C	snv	BDIX.Cg-Tal/NemOda (KyushuU), NIG-III/Hok (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), DOB/Oda (KyushuU), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU)
13	79383039	79383040	A	T	snv	Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
13	79383050	79383051	C	A	snv	SDLEF7/Barth (UDEL), BDIX.Cg-Tal/NemOda (KyushuU), ZF (KyushuU), LE/OrlBarth (UDEL), Crl:SD (UDEL), NIG-III/Hok (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), DOB/Oda (KyushuU)
13	79383075	79383076	A	G	snv	F344/NSlc (KyushuU), HTX/Kyo (KyushuU), NIG-III/Hok (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL), RCS/Kyo (KyushuU), ZF (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), F344/Jcl (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), SDLEF7/Barth (UDEL)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
13	72044879	72044880	G	T	snv	SBN/Ygl (ICL)
13	72045092	72045093	T	C	snv	M520/N (KNAW)
13	72045339	72045340	T	A	snv	WN/N (KNAW)

Assembly: mRatBN7.2

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
13	68969067	68969068	G	A	snv	ACI/EurMcwi (2019), WN/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FXLE16/Stm (2020), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), MR/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), WKY/NCrl (2019), ACI/N (2020)
13	68969163	68969164	C	T	snv	M520/N (2020), F344/N (2020), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WN/N (2020)
13	68969164	68969165	A	G	snv	F344/N (2020), M520/N (2020), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WN/N (2020)
13	68969185	68969186	A	G	snv	M520/N (2020), F344/N (2020), SHR/OlalpcvMcwi (2019), WN/N (2020), WAG/RijCrl (2020)
13	68969196	68969197	G	A	snv	SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), M520/N (2020), F344/N (2020), WN/N (2020)
13	68969197	68969198	A	G	snv	WAG/RijCrl (2020), SHR/OlalpcvMcwi (2019), M520/N (2020), F344/N (2020), WN/N (2020)
13	68969248	68969249	A	T	snv	WKY/N (2020), WN/N (2020), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SHR/OlalpcvMcwi (2019), PVG/Seac (2019), MWF/Hsd (2019), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), LEXF3/Stm (2020), LEW/Crl (2019), HXB2/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), GK/FarMcwi (2019), FXLE16/Stm (2020), FHH/EurMcwi (2019), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), DA/OlaHsd (2019), BXH3/CubMcwi (2020), BXH2/CubMcwi (2020), ACI/N (2020), WKY/NCrl (2019)
13	68969265	68969266	C	T	snv	WN/N (2020), WKY/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SHR/OlalpcvMcwi (2019), PVG/Seac (2019), MWF/Hsd (2019), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), LEXF3/Stm (2020), LEW/Crl (2019), HXB2/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), GK/FarMcwi (2019), FXLE16/Stm (2020), FHH/EurMcwi (2019), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), DA/OlaHsd (2019), BXH3/CubMcwi (2020), ACI/N (2020), BXH2/CubMcwi (2020)
13	68969309	68969310	T	A	snv	DA/OlaHsd (2019), WKY/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SHR/OlalpcvMcwi (2019), PVG/Seac (2019), MWF/Hsd (2019), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), LEXF3/Stm (2020), LEW/Crl (2019), HXB2/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), GK/FarMcwi (2019), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), WN/N (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020)
13	68969383	68969384	C	T	snv	WN/N (2020), ACI/EurMcwi (2019), WKY/NCrl (2019), WAG/RijCrl (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), MR/N (2020), LEXF3/Stm (2020), HXB20/IpcvMcwi (2020), FXLE16/Stm (2020), FHH/EurMcwi (2019), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), ACI/N (2020), WKY/N (2020)
13	68969403	68969404	G	C	snv	ACI/EurMcwi (2019), DA/OlaHsd (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), LEXF3/Stm (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020)
13	68969406	68969407	C	T	snv	ACI/EurMcwi (2019), WN/N (2020), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), LEXF3/Stm (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), DA/OlaHsd (2019)
13	68969446	68969447	T	C	snv	GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEXF3/Stm (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (2019), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020)
13	68969473	68969474	A	T	snv	WAG/RijCrl (2020), SS/JrHsdMcwi (2019), M520/N (2020), LEW/Crl (2019), HXB4/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), WKY/N (2020), HXB10/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE16/Stm (2020), FHH/EurMcwi (2019), F344/NCrl (2019), F344/DuCrl (2019), HXB20/IpcvMcwi (2020)
13	68969484	68969485	C	A	snv	SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), SHRSP/A3NCrl (2019), M520/N (2020), M520/NRrrcMcwi (2019), LEW/Crl (2019), HXB4/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB10/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE16/Stm (2020), FHH/EurMcwi (2019), F344/Stm (2019), F344/NCrl (2019), ACI/EurMcwi (2019), F344/DuCrl (2019)
13	68969509	68969510	A	G	snv	ACI/EurMcwi (2019), WN/N (2020), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), F344/DuCrl (2019)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1598128	AgrOrtholog
BioCyc Gene	G2FUF-17800	BioCyc
Ensembl Genes	ENSRNOG00000004712	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000059194	UniProtKB/TrEMBL
	ENSRNOP00000073625	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065801	UniProtKB/TrEMBL
	ENSRNOT00000079152	UniProtKB/TrEMBL
Gene3D-CATH	3.90.215.10	UniProtKB/TrEMBL
InterPro	Fibrinogen-like_C	UniProtKB/TrEMBL
	Fibrinogen_a/b/g_C_1	UniProtKB/TrEMBL
	Fibrinogen_a/b/g_C_dom	UniProtKB/TrEMBL
	Fibrinogen_CS	UniProtKB/TrEMBL
KEGG Report	rno:679942	UniProtKB/TrEMBL
NCBI Gene	679942	ENTREZGENE
Pfam	Fibrinogen_C	UniProtKB/TrEMBL
PhenoGen	Angptl1	PhenoGen
PROSITE	FIBRINOGEN_C_1	UniProtKB/TrEMBL
	FIBRINOGEN_C_2	UniProtKB/TrEMBL
SMART	FBG	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56496	UniProtKB/TrEMBL
UniProt	A0A0G2K603_RAT	UniProtKB/TrEMBL
	D4A593_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-07-08	Angptl1	angiopoietin-like 1	LOC684489	similar to angiopoietin-like 1	Data Merged	1643240	APPROVED
2008-03-05	Angptl1	angiopoietin-like 1	LOC679942	similar to angiopoietin-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC679942	similar to angiopoietin-like 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC684489	similar to angiopoietin-like 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar