Suco (SUN domain containing ossification factor) - Rat Genome Database

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Gene: Suco (SUN domain containing ossification factor) Rattus norvegicus
Analyze
Symbol: Suco
Name: SUN domain containing ossification factor
RGD ID: 735185
Description: Predicted to be involved in positive regulation of collagen biosynthetic process; positive regulation of osteoblast differentiation; and regulation of bone remodeling. Predicted to be located in rough endoplasmic reticulum. Predicted to be active in cytoplasm and membrane. Orthologous to human SUCO (SUN domain containing ossification factor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Dd25; hypothetical protein Dd25; membrane protein CH1; protein C1orf9 homolog; protein osteopotentia homolog; SUN domain-containing ossification factor; SUN-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81376,726,095 - 76,791,174 (-)NCBIGRCr8
mRatBN7.21374,192,808 - 74,257,896 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1374,193,573 - 74,257,896 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1376,763,182 - 76,827,500 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01378,070,281 - 78,134,592 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01375,330,141 - 75,394,457 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01379,736,485 - 79,801,133 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1379,736,482 - 79,801,561 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01384,629,768 - 84,694,850 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41377,512,517 - 77,575,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11377,526,704 - 77,589,980 (-)NCBI
Celera1373,947,829 - 74,010,497 (-)NCBICelera
Cytogenetic Map13q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20440000  


Genomics

Comparative Map Data
Suco
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81376,726,095 - 76,791,174 (-)NCBIGRCr8
mRatBN7.21374,192,808 - 74,257,896 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1374,193,573 - 74,257,896 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1376,763,182 - 76,827,500 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01378,070,281 - 78,134,592 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01375,330,141 - 75,394,457 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01379,736,485 - 79,801,133 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1379,736,482 - 79,801,561 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01384,629,768 - 84,694,850 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41377,512,517 - 77,575,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11377,526,704 - 77,589,980 (-)NCBI
Celera1373,947,829 - 74,010,497 (-)NCBICelera
Cytogenetic Map13q22NCBI
SUCO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381172,532,349 - 172,611,833 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1172,532,349 - 172,611,833 (+)EnsemblGRCh38hg38GRCh38
GRCh371172,501,489 - 172,580,973 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361170,768,112 - 170,847,594 (+)NCBINCBI36Build 36hg18NCBI36
Build 341169,233,145 - 169,312,628NCBI
Celera1145,611,714 - 145,690,427 (+)NCBICelera
Cytogenetic Map1q24.3NCBI
HuRef1143,726,516 - 143,805,573 (+)NCBIHuRef
CHM1_11173,924,412 - 174,003,286 (+)NCBICHM1_1
T2T-CHM13v2.01171,889,056 - 171,968,934 (+)NCBIT2T-CHM13v2.0
Suco
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,643,681 - 161,704,506 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,643,683 - 161,704,251 (-)EnsemblGRCm39 Ensembl
GRCm381161,816,112 - 161,876,837 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,816,114 - 161,876,682 (-)EnsemblGRCm38mm10GRCm38
MGSCv371163,746,243 - 163,806,792 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361163,652,790 - 163,713,822 (-)NCBIMGSCv36mm8
Celera1164,271,070 - 164,331,590 (-)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.95NCBI
Suco
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540612,985,856 - 13,065,855 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540612,985,339 - 13,064,863 (+)NCBIChiLan1.0ChiLan1.0
SUCO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2177,131,516 - 77,213,205 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1176,811,510 - 76,893,460 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01148,030,922 - 148,112,755 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11151,740,627 - 151,821,285 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1151,739,934 - 151,821,285 (+)Ensemblpanpan1.1panPan2
SUCO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1726,375,414 - 26,410,001 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl726,376,990 - 26,464,125 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha725,906,260 - 25,995,131 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0726,126,201 - 26,215,298 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl726,126,203 - 26,215,320 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1726,037,094 - 26,126,044 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0726,107,058 - 26,196,508 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0726,257,807 - 26,346,923 (-)NCBIUU_Cfam_GSD_1.0
Suco
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934496,976,873 - 97,045,569 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648114,823,253 - 14,892,318 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648114,823,622 - 14,892,312 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUCO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9114,916,855 - 115,007,972 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19114,916,957 - 115,007,979 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29126,512,893 - 126,604,568 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SUCO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12556,541,074 - 56,623,086 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2556,541,038 - 56,623,201 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605558,147,005 - 58,229,222 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Suco
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247719,096,453 - 9,168,731 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247719,094,893 - 9,168,989 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Suco
350 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:33
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000036483
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)135949252277046890Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)136906051977046890Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)137402391880753406Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat

Markers in Region
BF398732  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21374,193,733 - 74,193,864 (+)MAPPERmRatBN7.2
Rnor_6.01379,737,410 - 79,737,540NCBIRnor6.0
Rnor_5.01384,630,693 - 84,630,823UniSTSRnor5.0
RGSC_v3.41377,512,088 - 77,512,218UniSTSRGSC3.4
Celera1373,947,400 - 73,947,530UniSTS
RH 3.4 Map13417.6UniSTS
Cytogenetic Map13q22UniSTS
BE119592  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21374,291,663 - 74,291,824 (+)MAPPERmRatBN7.2
Rnor_6.01379,835,326 - 79,835,486NCBIRnor6.0
Rnor_5.01384,728,607 - 84,728,767UniSTSRnor5.0
RGSC_v3.41377,610,837 - 77,610,997UniSTSRGSC3.4
Celera1374,044,596 - 74,044,756UniSTS
RH 3.4 Map13453.8UniSTS
Cytogenetic Map13q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 42 26 19 26 1 1 74 35 41 11 1
Low 17 15 15 15 7 9 7
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_199403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001840781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001840782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC144674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ421447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HH770428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000036483   ⟹   ENSRNOP00000033216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1379,737,839 - 79,801,116 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000075936   ⟹   ENSRNOP00000068027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1374,193,573 - 74,257,896 (-)Ensembl
Rnor_6.0 Ensembl1379,736,482 - 79,801,561 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000075998   ⟹   ENSRNOP00000067901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1374,193,573 - 74,257,896 (-)Ensembl
Rnor_6.0 Ensembl1379,737,985 - 79,801,368 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076706   ⟹   ENSRNOP00000067896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1379,737,847 - 79,744,939 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084058   ⟹   ENSRNOP00000071346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1374,193,573 - 74,257,896 (-)Ensembl
Rnor_6.0 Ensembl1379,737,806 - 79,801,369 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087323   ⟹   ENSRNOP00000075385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1379,738,004 - 79,801,112 (-)Ensembl
RefSeq Acc Id: NM_199403   ⟹   NP_955435
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,726,859 - 76,791,174 (-)NCBI
mRatBN7.21374,193,573 - 74,257,896 (-)NCBI
Rnor_6.01379,737,839 - 79,801,116 (-)NCBI
Rnor_5.01384,629,768 - 84,694,850 (-)NCBI
RGSC_v3.41377,512,517 - 77,575,792 (-)RGD
Celera1373,947,829 - 74,010,497 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250164   ⟹   XP_006250226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,726,095 - 76,790,796 (-)NCBI
mRatBN7.21374,192,808 - 74,257,519 (-)NCBI
Rnor_6.01379,736,485 - 79,801,133 (-)NCBI
Rnor_5.01384,629,768 - 84,694,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250166   ⟹   XP_006250228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,726,095 - 76,790,796 (-)NCBI
mRatBN7.21374,192,808 - 74,257,519 (-)NCBI
Rnor_6.01379,736,485 - 79,801,133 (-)NCBI
Rnor_5.01384,629,768 - 84,694,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769657   ⟹   XP_008767879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,726,095 - 76,790,796 (-)NCBI
mRatBN7.21374,192,808 - 74,257,519 (-)NCBI
Rnor_6.01379,736,485 - 79,801,133 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769658   ⟹   XP_008767880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,726,095 - 76,790,796 (-)NCBI
mRatBN7.21374,192,808 - 74,257,519 (-)NCBI
Rnor_6.01379,736,485 - 79,801,133 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598851   ⟹   XP_017454340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,726,095 - 76,790,796 (-)NCBI
mRatBN7.21374,192,808 - 74,257,519 (-)NCBI
Rnor_6.01379,736,485 - 79,801,133 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039090908   ⟹   XP_038946836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,726,095 - 76,790,793 (-)NCBI
mRatBN7.21374,192,808 - 74,257,517 (-)NCBI
RefSeq Acc Id: XM_063272485   ⟹   XP_063128555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,726,095 - 76,790,796 (-)NCBI
RefSeq Acc Id: XR_001840781
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,729,744 - 76,790,796 (-)NCBI
mRatBN7.21374,196,460 - 74,257,519 (-)NCBI
Rnor_6.01379,740,134 - 79,801,133 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010056923
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,727,925 - 76,790,796 (-)NCBI
RefSeq Acc Id: XR_010056924
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,727,925 - 76,790,796 (-)NCBI
RefSeq Acc Id: XR_010056925
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81376,729,744 - 76,790,796 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_955435   ⟸   NM_199403
- Peptide Label: precursor
- UniProtKB: Q710E6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250228   ⟸   XM_006250166
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006250226   ⟸   XM_006250164
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008767880   ⟸   XM_008769658
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008767879   ⟸   XM_008769657
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017454340   ⟸   XM_017598851
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000067901   ⟸   ENSRNOT00000075998
RefSeq Acc Id: ENSRNOP00000068027   ⟸   ENSRNOT00000075936
RefSeq Acc Id: ENSRNOP00000033216   ⟸   ENSRNOT00000036483
RefSeq Acc Id: ENSRNOP00000075385   ⟸   ENSRNOT00000087323
RefSeq Acc Id: ENSRNOP00000071346   ⟸   ENSRNOT00000084058
RefSeq Acc Id: ENSRNOP00000067896   ⟸   ENSRNOT00000076706
RefSeq Acc Id: XP_038946836   ⟸   XM_039090908
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063128555   ⟸   XM_063272485
- Peptide Label: isoform X6
Protein Domains
SUN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q710E6-F1-model_v2 AlphaFold Q710E6 1-1253 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698939
Promoter ID:EPDNEW_R9459
Type:initiation region
Name:Suco_1
Description:SUN domain containing ossification factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9460  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01379,801,409 - 79,801,469EPDNEW
RGD ID:13698935
Promoter ID:EPDNEW_R9460
Type:single initiation site
Name:Suco_2
Description:SUN domain containing ossification factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9459  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01379,801,592 - 79,801,652EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735185 AgrOrtholog
BioCyc Gene G2FUF-17701 BioCyc
Ensembl Genes ENSRNOG00000026542 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075936.3 UniProtKB/TrEMBL
  ENSRNOT00000075998.3 UniProtKB/TrEMBL
  ENSRNOT00000084058 ENTREZGENE
  ENSRNOT00000084058.2 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Galactose-bd-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Suco/Slp1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SUN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:360863 UniProtKB/Swiss-Prot
NCBI Gene 360863 ENTREZGENE
PANTHER PTHR12953 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SUN DOMAIN-CONTAINING OSSIFICATION FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sad1_UNC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Suco PhenoGen
PROSITE SUN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026542 RatGTEx
Superfamily-SCOP SSF49785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096MIW3_RAT UniProtKB/TrEMBL
  A0A096MJ80_RAT UniProtKB/TrEMBL
  A0A0G2K087_RAT UniProtKB/TrEMBL
  Q710E6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-18 Suco  SUN domain containing ossification factor  Dd25  hypothetical protein Dd25  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-07-18 Suco  SUN domain containing ossification factor  Suco  SUN domain containing ossification factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Dd25  hypothetical protein Dd25  dd25  hypothetical protein  Symbol and Name updated 1299863 APPROVED