Acbd6 (acyl-CoA binding domain containing 6) - Rat Genome Database

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Gene: Acbd6 (acyl-CoA binding domain containing 6) Rattus norvegicus
Analyze
Symbol: Acbd6
Name: acyl-CoA binding domain containing 6
RGD ID: 1305030
Description: Predicted to enable fatty-acyl-CoA binding activity. Predicted to be located in cytoplasm. Orthologous to human ACBD6 (acyl-CoA binding domain containing 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: acyl-CoA-binding domain-containing protein 6; acyl-Coenzyme A binding domain containing 6; LOC289125
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21367,726,786 - 67,863,392 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1367,726,786 - 67,862,311 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1370,306,819 - 70,441,982 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01371,620,635 - 71,758,159 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01368,882,106 - 69,019,631 (+)NCBIRnor_WKY
Rnor_6.01373,196,504 - 73,334,077 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1373,196,571 - 73,334,077 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01378,130,712 - 78,265,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41370,519,376 - 70,654,968 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11370,533,455 - 70,669,047 (+)NCBI
Celera1367,598,996 - 67,734,266 (+)NCBICelera
Cytogenetic Map13q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
Acbd6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21367,726,786 - 67,863,392 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1367,726,786 - 67,862,311 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1370,306,819 - 70,441,982 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01371,620,635 - 71,758,159 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01368,882,106 - 69,019,631 (+)NCBIRnor_WKY
Rnor_6.01373,196,504 - 73,334,077 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1373,196,571 - 73,334,077 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01378,130,712 - 78,265,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41370,519,376 - 70,654,968 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11370,533,455 - 70,669,047 (+)NCBI
Celera1367,598,996 - 67,734,266 (+)NCBICelera
Cytogenetic Map13q21NCBI
ACBD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381180,269,653 - 180,502,577 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1180,269,653 - 180,502,954 (-)EnsemblGRCh38hg38GRCh38
GRCh371180,257,365 - 180,471,712 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361178,523,988 - 178,738,102 (-)NCBINCBI36Build 36hg18NCBI36
Build 341176,989,022 - 177,203,136NCBI
Celera1153,364,592 - 153,578,887 (-)NCBICelera
Cytogenetic Map1q25.2-q25.3NCBI
HuRef1151,488,279 - 151,702,640 (-)NCBIHuRef
CHM1_11181,680,679 - 181,893,779 (-)NCBICHM1_1
T2T-CHM13v2.01179,643,616 - 179,857,576 (-)NCBIT2T-CHM13v2.0
Acbd6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,433,845 - 155,564,120 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1155,433,866 - 155,567,076 (+)EnsemblGRCm39 Ensembl
GRCm381155,558,099 - 155,687,474 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,558,120 - 155,691,330 (+)EnsemblGRCm38mm10GRCm38
MGSCv371157,405,250 - 157,534,363 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361157,320,340 - 157,449,450 (+)NCBIMGSCv36mm8
Celera1157,991,361 - 158,120,462 (+)NCBICelera
Cytogenetic Map1G3NCBI
Acbd6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540619,481,640 - 19,658,806 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540619,481,640 - 19,658,807 (-)NCBIChiLan1.0ChiLan1.0
ACBD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11159,448,023 - 159,661,741 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,448,023 - 159,661,741 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01155,774,799 - 155,988,767 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ACBD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1713,836,665 - 14,043,996 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl713,836,667 - 14,044,156 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha713,415,194 - 13,622,298 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0713,564,195 - 13,771,838 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl713,564,204 - 13,771,514 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1713,474,761 - 13,682,238 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0713,581,204 - 13,788,870 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0713,705,277 - 13,912,918 (-)NCBIUU_Cfam_GSD_1.0
Acbd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934490,900,447 - 91,050,868 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364818,747,203 - 8,897,617 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACBD6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9121,913,053 - 122,115,783 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19121,913,050 - 122,116,031 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29133,728,813 - 133,933,437 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACBD6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12548,884,818 - 49,089,557 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2548,885,434 - 49,090,615 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605550,276,838 - 50,482,373 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acbd6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624771569,277 - 797,718 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624771572,664 - 797,826 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Acbd6
711 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:84
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000004772
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303028Bp329Blood pressure QTL 329arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135849787273485113Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)135949252277046890Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat

Markers in Region
BE097200  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21367,766,447 - 67,766,603 (+)MAPPERmRatBN7.2
Rnor_6.01373,236,246 - 73,236,401NCBIRnor6.0
Rnor_5.01378,170,076 - 78,170,231UniSTSRnor5.0
RGSC_v3.41370,559,511 - 70,559,666UniSTSRGSC3.4
Celera1367,638,490 - 67,638,645UniSTS
RH 3.4 Map13354.1UniSTS
Cytogenetic Map13q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 43 50 34 19 34 8 11 74 35 41 11 8
Low 1 7 7 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001011906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_359014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC086598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000004772   ⟹   ENSRNOP00000004772
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1367,726,786 - 67,862,311 (+)Ensembl
Rnor_6.0 Ensembl1373,196,571 - 73,334,077 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093372
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1373,255,269 - 73,269,801 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109039   ⟹   ENSRNOP00000085910
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1367,726,786 - 67,740,589 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118888   ⟹   ENSRNOP00000096543
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1367,726,786 - 67,799,987 (+)Ensembl
RefSeq Acc Id: NM_001011906   ⟹   NP_001011906
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,726,786 - 67,862,312 (+)NCBI
Rnor_6.01373,196,571 - 73,334,077 (+)NCBI
Rnor_5.01378,130,712 - 78,265,045 (+)NCBI
RGSC_v3.41370,519,376 - 70,654,968 (+)RGD
Celera1367,598,996 - 67,734,266 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250031   ⟹   XP_006250093
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,247 - 67,862,312 (+)NCBI
Rnor_6.01373,196,514 - 73,334,077 (+)NCBI
Rnor_5.01378,130,712 - 78,265,045 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250032   ⟹   XP_006250094
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,247 - 67,757,529 (+)NCBI
Rnor_6.01373,196,504 - 73,225,054 (+)NCBI
Rnor_5.01378,130,712 - 78,265,045 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250036   ⟹   XP_006250098
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,005 - 67,761,689 (+)NCBI
Rnor_6.01373,196,512 - 73,231,271 (+)NCBI
Rnor_5.01378,130,712 - 78,265,045 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598704   ⟹   XP_017454193
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,247 - 67,862,312 (+)NCBI
Rnor_6.01373,196,514 - 73,334,077 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090468   ⟹   XP_038946396
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,247 - 67,862,312 (+)NCBI
RefSeq Acc Id: XM_039090470   ⟹   XP_038946398
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,247 - 67,757,529 (+)NCBI
RefSeq Acc Id: XM_039090471   ⟹   XP_038946399
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,247 - 67,757,529 (+)NCBI
RefSeq Acc Id: XM_039090472   ⟹   XP_038946400
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,005 - 67,761,081 (+)NCBI
RefSeq Acc Id: XR_005492216
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,247 - 67,862,129 (+)NCBI
RefSeq Acc Id: XR_005492217
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,247 - 67,863,392 (+)NCBI
RefSeq Acc Id: XR_005492218
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,247 - 67,863,392 (+)NCBI
RefSeq Acc Id: XR_005492219
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,005 - 67,757,529 (+)NCBI
RefSeq Acc Id: XR_005492220
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,005 - 67,757,529 (+)NCBI
RefSeq Acc Id: XR_359014
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,247 - 67,862,312 (+)NCBI
Rnor_6.01373,196,512 - 73,334,077 (+)NCBI
Rnor_5.01378,130,712 - 78,265,045 (+)NCBI
Sequence:
RefSeq Acc Id: XR_595498
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21367,727,005 - 67,757,529 (+)NCBI
Rnor_6.01373,196,512 - 73,225,054 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001011906   ⟸   NM_001011906
- UniProtKB: Q5RJK8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006250094   ⟸   XM_006250032
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006250098   ⟸   XM_006250036
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006250093   ⟸   XM_006250031
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017454193   ⟸   XM_017598704
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000004772   ⟸   ENSRNOT00000004772
RefSeq Acc Id: XP_038946400   ⟸   XM_039090472
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038946396   ⟸   XM_039090468
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038946399   ⟸   XM_039090471
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038946398   ⟸   XM_039090470
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000085910   ⟸   ENSRNOT00000109039
RefSeq Acc Id: ENSRNOP00000096543   ⟸   ENSRNOT00000118888
Protein Domains
ACB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5RJK8-F1-model_v2 AlphaFold Q5RJK8 1-282 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698907
Promoter ID:EPDNEW_R9432
Type:initiation region
Name:Acbd6_1
Description:acyl-CoA binding domain containing 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9433  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01373,196,533 - 73,196,593EPDNEW
RGD ID:13698908
Promoter ID:EPDNEW_R9433
Type:initiation region
Name:Acbd6_2
Description:acyl-CoA binding domain containing 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9432  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01373,196,779 - 73,196,839EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305030 AgrOrtholog
BioCyc Gene G2FUF-17835 BioCyc
Ensembl Genes ENSRNOG00000003550 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000004772 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000085910 ENTREZGENE
  ENSRNOP00000085910.1 UniProtKB/TrEMBL
  ENSRNOP00000096543.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004772 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000109039 ENTREZGENE
  ENSRNOT00000109039.1 UniProtKB/TrEMBL
  ENSRNOT00000118888.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7313105 IMAGE-MGC_LOAD
InterPro Acyl-CoA-binding_protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Acyl-CoA-binding_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:289125 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105589 IMAGE-MGC_LOAD
NCBI Gene 289125 ENTREZGENE
Pfam ACBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_2 UniProtKB/Swiss-Prot
  Ank_3 UniProtKB/TrEMBL
PhenoGen Acbd6 PhenoGen
PRINTS ACOABINDINGP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANKYRIN UniProtKB/Swiss-Prot
PROSITE ACB_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REP_REGION UniProtKB/Swiss-Prot
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A4U8_RAT UniProtKB/TrEMBL
  A0A8I6AQ05_RAT UniProtKB/TrEMBL
  ACBD6_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-28 Acbd6  acyl-CoA binding domain containing 6  Acbd6  acyl-Coenzyme A binding domain containing 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Acbd6  acyl-Coenzyme A binding domain containing 6  Acbd6_predicted  acyl-Coenzyme A binding domain containing 6 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Acbd6_predicted  acyl-Coenzyme A binding domain containing 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED