Rabgap1l (RAB GTPase activating protein 1-like) - Rat Genome Database

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Gene: Rabgap1l (RAB GTPase activating protein 1-like) Rattus norvegicus
Analyze
Symbol: Rabgap1l
Name: RAB GTPase activating protein 1-like
RGD ID: 1304620
Description: Predicted to enable GTPase activator activity and small GTPase binding activity. Predicted to be involved in activation of GTPase activity. Predicted to act upstream of or within regulation of protein localization. Predicted to be located in several cellular components, including Golgi apparatus; cilium; and early endosome. Orthologous to human RABGAP1L (RAB GTPase activating protein 1 like); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC304914; rab GTPase-activating protein 1-like; RGD1304620; similar to rab6 GTPase activating protein (GAP and centrosome-associated)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21372,464,114 - 73,059,845 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1372,468,110 - 73,059,984 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1375,048,747 - 75,654,247 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01376,341,173 - 76,936,896 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01373,600,723 - 74,196,453 (-)NCBIRnor_WKY
Rnor_6.01377,975,392 - 78,609,009 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1378,011,047 - 78,609,045 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01382,882,538 - 83,505,785 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41375,685,603 - 76,275,726 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11375,668,772 - 76,360,873 (-)NCBI
Celera1372,303,232 - 72,794,285 (-)NCBICelera
Celera1372,267,661 - 72,301,255 (-)NCBICelera
Cytogenetic Map13q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-butoxyethanol  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
7,12-dimethyltetraphene  (ISO)
aconitine  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzoates  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (EXP,ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fluvastatin  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (EXP)
O-methyleugenol  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zebularine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16923123  


Genomics

Comparative Map Data
Rabgap1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21372,464,114 - 73,059,845 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1372,468,110 - 73,059,984 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1375,048,747 - 75,654,247 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01376,341,173 - 76,936,896 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01373,600,723 - 74,196,453 (-)NCBIRnor_WKY
Rnor_6.01377,975,392 - 78,609,009 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1378,011,047 - 78,609,045 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01382,882,538 - 83,505,785 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41375,685,603 - 76,275,726 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11375,668,772 - 76,360,873 (-)NCBI
Celera1372,303,232 - 72,794,285 (-)NCBICelera
Celera1372,267,661 - 72,301,255 (-)NCBICelera
Cytogenetic Map13q22NCBI
RABGAP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381174,159,520 - 174,995,308 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1174,159,410 - 174,995,308 (+)EnsemblGRCh38hg38GRCh38
GRCh371174,128,658 - 174,964,445 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361172,395,257 - 173,193,950 (+)NCBINCBI36Build 36hg18NCBI36
Build 341170,860,311 - 171,684,885NCBI
Celera1147,238,027 - 148,036,995 (+)NCBICelera
Cytogenetic Map1q25.1NCBI
HuRef1145,353,606 - 146,190,781 (+)NCBIHuRef
CHM1_11175,550,999 - 176,387,412 (+)NCBICHM1_1
T2T-CHM13v2.01173,517,499 - 174,349,063 (+)NCBIT2T-CHM13v2.0
Rabgap1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,046,744 - 160,621,046 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,046,744 - 160,620,781 (-)EnsemblGRCm39 Ensembl
GRCm381160,219,174 - 160,793,476 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,219,174 - 160,793,211 (-)EnsemblGRCm38mm10GRCm38
MGSCv371162,149,305 - 162,723,069 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,055,851 - 162,629,615 (-)NCBIMGSCv36mm8
Celera1162,630,945 - 163,158,157 (-)NCBICelera
Cytogenetic Map1H2.1NCBI
Rabgap1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540614,262,738 - 14,815,052 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540614,216,549 - 14,815,052 (+)NCBIChiLan1.0ChiLan1.0
RABGAP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11153,378,828 - 154,205,147 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1153,437,265 - 154,199,810 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01149,676,356 - 150,506,884 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RABGAP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1724,390,324 - 25,132,699 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl724,394,861 - 25,132,932 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha723,916,473 - 24,666,718 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0724,137,986 - 24,882,585 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl724,142,532 - 24,882,672 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1724,050,645 - 24,803,999 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0724,141,722 - 24,886,011 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0724,286,839 - 25,031,194 (-)NCBIUU_Cfam_GSD_1.0
Rabgap1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934495,366,716 - 95,924,437 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648113,218,553 - 13,749,173 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493648113,213,465 - 13,771,188 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABGAP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9116,463,779 - 117,060,053 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19116,402,395 - 117,060,057 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29128,035,972 - 128,191,270 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RABGAP1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12554,265,906 - 55,034,061 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605555,841,230 - 56,593,667 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rabgap1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247717,004,468 - 7,738,646 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247716,999,341 - 7,738,571 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rabgap1l
3237 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:116
Interacting mature miRNAs:123
Transcripts:ENSRNOT00000003671
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
2303028Bp329Blood pressure QTL 329arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135849787273485113Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)135949252277046890Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)136906051977046890Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat

Markers in Region
D13Rat43  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21372,788,785 - 72,788,916 (+)MAPPERmRatBN7.2
Rnor_6.01378,315,069 - 78,315,199NCBIRnor6.0
Rnor_5.01383,215,173 - 83,215,303UniSTSRnor5.0
RGSC_v3.41376,003,170 - 76,003,417RGDRGSC3.4
RGSC_v3.41376,003,284 - 76,003,414UniSTSRGSC3.4
RGSC_v3.11376,017,472 - 76,017,602RGD
Celera1372,591,282 - 72,591,406UniSTS
RH 3.4 Map13441.9RGD
RH 3.4 Map13441.9UniSTS
RH 2.0 Map13541.2RGD
FHH x ACI Map1330.36RGD
Cytogenetic Map13q22UniSTS
BE120575  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21372,800,331 - 72,800,483 (+)MAPPERmRatBN7.2
Rnor_6.01378,326,612 - 78,326,763NCBIRnor6.0
Rnor_5.01383,226,602 - 83,226,753UniSTSRnor5.0
RGSC_v3.41376,015,343 - 76,015,494UniSTSRGSC3.4
Celera1372,603,075 - 72,603,226UniSTS
RH 3.4 Map13437.5UniSTS
Cytogenetic Map13q22UniSTS
RH139873  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21372,658,445 - 72,658,655 (+)MAPPERmRatBN7.2
Rnor_6.01378,173,641 - 78,173,850NCBIRnor6.0
Rnor_5.01383,076,647 - 83,076,856UniSTSRnor5.0
RGSC_v3.41375,869,481 - 75,869,690UniSTSRGSC3.4
Celera1372,460,845 - 72,461,054UniSTS
Cytogenetic Map13q22UniSTS
AU047744  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21372,566,629 - 72,566,791 (+)MAPPERmRatBN7.2
Rnor_6.01378,078,031 - 78,078,192NCBIRnor6.0
Rnor_5.01382,985,115 - 82,985,276UniSTSRnor5.0
RGSC_v3.41375,753,621 - 75,753,782UniSTSRGSC3.4
Celera1372,369,732 - 72,369,893UniSTS
Cytogenetic Map13q22UniSTS
AU048985  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21372,619,484 - 72,619,745 (+)MAPPERmRatBN7.2
Rnor_6.01378,133,303 - 78,133,563NCBIRnor6.0
Rnor_5.01383,037,902 - 83,038,162UniSTSRnor5.0
RGSC_v3.41375,808,764 - 75,809,024UniSTSRGSC3.4
Celera1372,422,585 - 72,422,845UniSTS
Cytogenetic Map13q22UniSTS
AU049408  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21372,674,494 - 72,674,668 (+)MAPPERmRatBN7.2
Rnor_6.01378,197,317 - 78,197,488NCBIRnor6.0
Rnor_5.01383,100,348 - 83,100,519UniSTSRnor5.0
RGSC_v3.41375,886,363 - 75,886,534UniSTSRGSC3.4
Celera1372,476,763 - 72,476,934UniSTS
Cytogenetic Map13q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 40 15 7 19 7 1 1 46 8 16 9 1
Low 1 3 42 34 34 7 10 28 27 25 2 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000003671   ⟹   ENSRNOP00000003671
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1372,499,773 - 73,035,842 (-)Ensembl
Rnor_6.0 Ensembl1378,011,047 - 78,608,844 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000075887
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1378,089,756 - 78,282,881 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076272
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1372,908,376 - 73,059,931 (-)Ensembl
Rnor_6.0 Ensembl1378,431,711 - 78,608,995 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076902   ⟹   ENSRNOP00000083125
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1372,468,110 - 72,588,681 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076999
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1372,747,220 - 73,059,984 (-)Ensembl
Rnor_6.0 Ensembl1378,270,056 - 78,609,045 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087506   ⟹   ENSRNOP00000075539
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1372,499,773 - 73,000,410 (-)Ensembl
Rnor_6.0 Ensembl1378,011,049 - 78,521,911 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100382   ⟹   ENSRNOP00000097725
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1372,468,110 - 72,552,251 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115521   ⟹   ENSRNOP00000079939
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1372,468,110 - 72,496,946 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119833   ⟹   ENSRNOP00000083672
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1372,468,110 - 73,059,818 (-)Ensembl
RefSeq Acc Id: NM_001107190   ⟹   NP_001100660
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,499,773 - 72,991,366 (-)NCBI
Rnor_6.01378,011,049 - 78,521,911 (-)NCBI
Rnor_5.01382,882,538 - 83,505,785 (-)NCBI
RGSC_v3.41375,685,603 - 76,275,726 (-)RGD
Celera1372,303,232 - 72,794,285 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250105   ⟹   XP_006250167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 73,059,845 (-)NCBI
Rnor_6.01377,975,392 - 78,609,009 (-)NCBI
Rnor_5.01382,882,538 - 83,505,785 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250106   ⟹   XP_006250168
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 73,034,386 (-)NCBI
Rnor_6.01377,975,392 - 78,584,337 (-)NCBI
Rnor_5.01382,882,538 - 83,505,785 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250107   ⟹   XP_006250169
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,499,042 - 73,059,845 (-)NCBI
Rnor_6.01378,010,320 - 78,609,008 (-)NCBI
Rnor_5.01382,882,538 - 83,505,785 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250108   ⟹   XP_006250170
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 72,589,236 (-)NCBI
Rnor_6.01377,975,392 - 78,100,077 (-)NCBI
Rnor_5.01382,882,538 - 83,505,785 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769643   ⟹   XP_008767865
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 72,552,649 (-)NCBI
Rnor_6.01377,975,392 - 78,066,956 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769644   ⟹   XP_008767866
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 72,555,834 (-)NCBI
Rnor_6.01377,975,392 - 78,066,956 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769645   ⟹   XP_008767867
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 72,500,066 (-)NCBI
Rnor_6.01377,975,392 - 78,009,072 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598819   ⟹   XP_017454308
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 72,552,649 (-)NCBI
Rnor_6.01377,975,392 - 78,066,956 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039090772   ⟹   XP_038946700
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 73,059,845 (-)NCBI
RefSeq Acc Id: XM_039090773   ⟹   XP_038946701
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 72,950,185 (-)NCBI
RefSeq Acc Id: XM_039090774   ⟹   XP_038946702
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 72,963,618 (-)NCBI
RefSeq Acc Id: XM_039090775   ⟹   XP_038946703
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,804,929 - 73,059,845 (-)NCBI
RefSeq Acc Id: XM_039090776   ⟹   XP_038946704
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 72,731,152 (-)NCBI
RefSeq Acc Id: XM_039090777   ⟹   XP_038946705
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 72,552,649 (-)NCBI
RefSeq Acc Id: XM_039090778   ⟹   XP_038946706
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21372,464,114 - 72,555,816 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100660   ⟸   NM_001107190
- UniProtKB: D3ZKH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250167   ⟸   XM_006250105
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G9C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250168   ⟸   XM_006250106
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G9C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250170   ⟸   XM_006250108
- Peptide Label: isoform X8
- UniProtKB: A0A8I6GAC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250169   ⟸   XM_006250107
- Peptide Label: isoform X3
- UniProtKB: D3ZKH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767866   ⟸   XM_008769644
- Peptide Label: isoform X9
- UniProtKB: A0A8I6ARQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767865   ⟸   XM_008769643
- Peptide Label: isoform X9
- UniProtKB: A0A8I6ARQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767867   ⟸   XM_008769645
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZNN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454308   ⟸   XM_017598819
- Peptide Label: isoform X9
- UniProtKB: A0A8I6ARQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075539   ⟸   ENSRNOT00000087506
RefSeq Acc Id: ENSRNOP00000003671   ⟸   ENSRNOT00000003671
RefSeq Acc Id: XP_038946700   ⟸   XM_039090772
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038946702   ⟸   XM_039090774
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038946701   ⟸   XM_039090773
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038946704   ⟸   XM_039090776
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038946706   ⟸   XM_039090778
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038946705   ⟸   XM_039090777
- Peptide Label: isoform X9
- UniProtKB: A0A8I6ARQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946703   ⟸   XM_039090775
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000083672   ⟸   ENSRNOT00000119833
RefSeq Acc Id: ENSRNOP00000079939   ⟸   ENSRNOT00000115521
RefSeq Acc Id: ENSRNOP00000083125   ⟸   ENSRNOT00000076902
RefSeq Acc Id: ENSRNOP00000097725   ⟸   ENSRNOT00000100382
Protein Domains
PID   Rab-GAP TBC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZKH6-F1-model_v2 AlphaFold D3ZKH6 1-815 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698933
Promoter ID:EPDNEW_R9452
Type:multiple initiation site
Name:Rabgap1l_1
Description:RAB GTPase activating protein 1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01378,608,907 - 78,608,967EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304620 AgrOrtholog
BioCyc Gene G2FUF-17762 BioCyc
Ensembl Genes ENSRNOG00000002736 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000003671.6 UniProtKB/TrEMBL
  ENSRNOP00000075539 ENTREZGENE
  ENSRNOP00000075539.2 UniProtKB/TrEMBL
  ENSRNOP00000079939 ENTREZGENE
  ENSRNOP00000079939.1 UniProtKB/TrEMBL
  ENSRNOP00000083125 ENTREZGENE
  ENSRNOP00000083125.1 UniProtKB/TrEMBL
  ENSRNOP00000083672 ENTREZGENE
  ENSRNOP00000083672.1 UniProtKB/TrEMBL
  ENSRNOP00000084608 ENTREZGENE
  ENSRNOP00000084608.1 UniProtKB/TrEMBL
  ENSRNOP00000093938.1 UniProtKB/TrEMBL
  ENSRNOP00000097725 ENTREZGENE
  ENSRNOP00000097725.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003671.9 UniProtKB/TrEMBL
  ENSRNOT00000076272.2 UniProtKB/TrEMBL
  ENSRNOT00000076902 ENTREZGENE
  ENSRNOT00000076902.2 UniProtKB/TrEMBL
  ENSRNOT00000076999 ENTREZGENE
  ENSRNOT00000076999.3 UniProtKB/TrEMBL
  ENSRNOT00000087506 ENTREZGENE
  ENSRNOT00000087506.2 UniProtKB/TrEMBL
  ENSRNOT00000100382 ENTREZGENE
  ENSRNOT00000100382.1 UniProtKB/TrEMBL
  ENSRNOT00000115521 ENTREZGENE
  ENSRNOT00000115521.1 UniProtKB/TrEMBL
  ENSRNOT00000119833 ENTREZGENE
  ENSRNOT00000119833.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro Kinesin-like UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  PTyr_interaction_dom UniProtKB/TrEMBL
  Rab-GTPase-TBC_dom UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
  RABGAP1L UniProtKB/TrEMBL
KEGG Report rno:304914 UniProtKB/TrEMBL
NCBI Gene 304914 ENTREZGENE
PANTHER PTHR22957:SF205 UniProtKB/TrEMBL
Pfam DUF3694 UniProtKB/TrEMBL
  RabGAP-TBC UniProtKB/TrEMBL
PhenoGen Rabgap1l PhenoGen
PROSITE PID UniProtKB/TrEMBL
  TBC_RABGAP UniProtKB/TrEMBL
SMART PTB UniProtKB/TrEMBL
  TBC UniProtKB/TrEMBL
Superfamily-SCOP RabGAP_TBC UniProtKB/TrEMBL
UniProt A0A0G2KAV2_RAT UniProtKB/TrEMBL
  A0A8I5ZNN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A1M6_RAT UniProtKB/TrEMBL
  A0A8I6ARQ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AXS5_RAT UniProtKB/TrEMBL
  A0A8I6G9C0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GAC9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZKH6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Rabgap1l  RAB GTPase activating protein 1-like  RGD1304620_predicted  similar to rab6 GTPase activating protein (GAP and centrosome-associated) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1304620_predicted  similar to rab6 GTPase activating protein (GAP and centrosome-associated) (predicted)  LOC304914_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC304914_predicted  similar to rab6 GTPase activating protein (GAP and centrosome-associated) (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL