Rabgap1l (RAB GTPase activating protein 1-like) - Rat Genome Database
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Gene: Rabgap1l (RAB GTPase activating protein 1-like) Rattus norvegicus
Analyze
Symbol: Rabgap1l
Name: RAB GTPase activating protein 1-like
RGD ID: 1304620
Description: Predicted to have GTPase activator activity and Rab GTPase binding activity. Predicted to be involved in activation of GTPase activity; intracellular protein transport; and regulation of protein localization. Predicted to localize to Golgi apparatus; early endosome; and nucleus. Orthologous to human RABGAP1L (RAB GTPase activating protein 1 like); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC304914; rab GTPase-activating protein 1-like; RGD1304620; similar to rab6 GTPase activating protein (GAP and centrosome-associated)
Orthologs:
Homo sapiens (human) : RABGAP1L (RAB GTPase activating protein 1 like)  HGNC  Alliance
Mus musculus (house mouse) : Rabgap1l (RAB GTPase activating protein 1-like)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rabgap1l (RAB GTPase activating protein 1 like)
Pan paniscus (bonobo/pygmy chimpanzee) : RABGAP1L (RAB GTPase activating protein 1 like)
Canis lupus familiaris (dog) : RABGAP1L (RAB GTPase activating protein 1 like)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rabgap1l (RAB GTPase activating protein 1 like)
Sus scrofa (pig) : RABGAP1L (RAB GTPase activating protein 1 like)
Chlorocebus sabaeus (African green monkey) : RABGAP1L (RAB GTPase activating protein 1 like)
Heterocephalus glaber (naked mole-rat) : Rabgap1l (RAB GTPase activating protein 1 like)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01377,975,392 - 78,609,009 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1378,011,047 - 78,609,045 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01382,882,538 - 83,505,785 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41375,685,603 - 76,275,726 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11375,668,772 - 76,360,873 (-)NCBI
Celera1372,267,661 - 72,301,255 (-)NCBICelera
Celera1372,303,232 - 72,794,285 (-)NCBICelera
Cytogenetic Map13q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-butoxyethanol  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
7,12-dimethyltetraphene  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzoates  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (EXP,ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fluvastatin  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (EXP)
O-methyleugenol  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)
zebularine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:16923123  


Genomics

Comparative Map Data
Rabgap1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01377,975,392 - 78,609,009 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1378,011,047 - 78,609,045 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01382,882,538 - 83,505,785 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41375,685,603 - 76,275,726 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11375,668,772 - 76,360,873 (-)NCBI
Celera1372,267,661 - 72,301,255 (-)NCBICelera
Celera1372,303,232 - 72,794,285 (-)NCBICelera
Cytogenetic Map13q22NCBI
RABGAP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1174,159,410 - 174,995,308 (+)EnsemblGRCh38hg38GRCh38
GRCh381174,159,414 - 174,995,308 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371174,128,552 - 174,964,445 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361172,395,257 - 173,193,950 (+)NCBINCBI36hg18NCBI36
Build 341170,860,311 - 171,684,885NCBI
Celera1147,238,027 - 148,036,995 (+)NCBI
Cytogenetic Map1q25.1NCBI
HuRef1145,353,606 - 146,190,781 (+)NCBIHuRef
CHM1_11175,550,999 - 176,387,412 (+)NCBICHM1_1
Rabgap1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,046,744 - 160,621,046 (-)NCBI
GRCm381160,219,174 - 160,793,476 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,219,174 - 160,793,211 (-)EnsemblGRCm38mm10GRCm38
MGSCv371162,149,305 - 162,723,069 (-)NCBIGRCm37mm9NCBIm37
MGSCv361162,055,851 - 162,629,615 (-)NCBImm8
Celera1162,630,945 - 163,158,157 (-)NCBICelera
Cytogenetic Map1H2.1NCBI
Rabgap1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540614,262,738 - 14,815,052 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540614,216,549 - 14,815,052 (+)NCBIChiLan1.0ChiLan1.0
RABGAP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11153,378,828 - 154,205,147 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1153,437,265 - 154,199,810 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01149,676,356 - 150,506,884 (+)NCBIMhudiblu_PPA_v0panPan3
RABGAP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl724,394,861 - 25,132,932 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1724,390,324 - 25,132,699 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rabgap1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493648113,213,465 - 13,771,188 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABGAP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9116,292,601 - 117,063,501 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19116,402,395 - 117,060,057 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29128,035,972 - 128,191,270 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RABGAP1L
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12554,265,906 - 55,034,061 (-)NCBI
Rabgap1l
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247716,999,341 - 7,738,571 (-)NCBI

Position Markers
D13Rat43  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01378,315,069 - 78,315,199NCBIRnor6.0
Rnor_5.01383,215,173 - 83,215,303UniSTSRnor5.0
RGSC_v3.41376,003,170 - 76,003,417RGDRGSC3.4
RGSC_v3.41376,003,284 - 76,003,414UniSTSRGSC3.4
RGSC_v3.11376,017,472 - 76,017,602RGD
Celera1372,591,282 - 72,591,406UniSTS
Cytogenetic Map13q22UniSTS
RH 3.4 Map13441.9UniSTS
RH 3.4 Map13441.9RGD
RH 2.0 Map13541.2RGD
FHH x ACI Map1330.36RGD
BE120575  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01378,326,612 - 78,326,763NCBIRnor6.0
Rnor_5.01383,226,602 - 83,226,753UniSTSRnor5.0
RGSC_v3.41376,015,343 - 76,015,494UniSTSRGSC3.4
Celera1372,603,075 - 72,603,226UniSTS
Cytogenetic Map13q22UniSTS
RH 3.4 Map13437.5UniSTS
RH139873  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01378,173,641 - 78,173,850NCBIRnor6.0
Rnor_5.01383,076,647 - 83,076,856UniSTSRnor5.0
RGSC_v3.41375,869,481 - 75,869,690UniSTSRGSC3.4
Celera1372,460,845 - 72,461,054UniSTS
Cytogenetic Map13q22UniSTS
AU047744  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01378,078,031 - 78,078,192NCBIRnor6.0
Rnor_5.01382,985,115 - 82,985,276UniSTSRnor5.0
RGSC_v3.41375,753,621 - 75,753,782UniSTSRGSC3.4
Celera1372,369,732 - 72,369,893UniSTS
Cytogenetic Map13q22UniSTS
AU048985  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01378,133,303 - 78,133,563NCBIRnor6.0
Rnor_5.01383,037,902 - 83,038,162UniSTSRnor5.0
RGSC_v3.41375,808,764 - 75,809,024UniSTSRGSC3.4
Celera1372,422,585 - 72,422,845UniSTS
Cytogenetic Map13q22UniSTS
AU049408  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01378,197,317 - 78,197,488NCBIRnor6.0
Rnor_5.01383,100,348 - 83,100,519UniSTSRnor5.0
RGSC_v3.41375,886,363 - 75,886,534UniSTSRGSC3.4
Celera1372,476,763 - 72,476,934UniSTS
Cytogenetic Map13q22UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131107975663Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131107975663Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131107975663Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13901690682995569Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13901690682995569Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1312193394108478121Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1324502279108770533Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1335301263107975663Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133614753399968921Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133614753399968921Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133734634882346348Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133937292784372927Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133950130093652524Rat
4889861Pur29Proteinuria QTL 2913.80.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)134231074486833540Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)134231074487310744Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)134250834587508345Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)134250834587508345Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134357571788575717Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134567662990676629Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135108098996080989Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)135156924896569248Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)135157782490675199Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1357903612102903612Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1362975663107975663Rat
2303028Bp329Blood pressure QTL 329arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136361128379034003Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)136450135182995671Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)136500824591629354Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1366971778111971778Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1371230858114033958Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1371230858114033958Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1372583716114033958Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)137456837882995671Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)137456837892916783Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)137456837892916783Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)137456837892916783Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)777694986114033958Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:116
Interacting mature miRNAs:123
Transcripts:ENSRNOT00000003671
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 40 15 7 19 7 1 1 46 8 16 9 1
Low 1 3 42 34 34 7 10 28 27 25 2 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07021547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07021571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01076279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000003671   ⟹   ENSRNOP00000003671
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1378,011,047 - 78,608,844 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000075887
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1378,089,756 - 78,282,881 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076272
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1378,431,711 - 78,608,995 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076999
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1378,270,056 - 78,609,045 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087506   ⟹   ENSRNOP00000075539
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1378,011,049 - 78,521,911 (-)Ensembl
RefSeq Acc Id: NM_001107190   ⟹   NP_001100660
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01378,011,049 - 78,521,911 (-)NCBI
Rnor_5.01382,882,538 - 83,505,785 (-)NCBI
RGSC_v3.41375,685,603 - 76,275,726 (-)RGD
Celera1372,303,232 - 72,794,285 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250105   ⟹   XP_006250167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01377,975,392 - 78,609,009 (-)NCBI
Rnor_5.01382,882,538 - 83,505,785 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250106   ⟹   XP_006250168
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01377,975,392 - 78,584,337 (-)NCBI
Rnor_5.01382,882,538 - 83,505,785 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250107   ⟹   XP_006250169
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01378,010,320 - 78,609,008 (-)NCBI
Rnor_5.01382,882,538 - 83,505,785 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250108   ⟹   XP_006250170
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01377,975,392 - 78,100,077 (-)NCBI
Rnor_5.01382,882,538 - 83,505,785 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008762553   ⟹   XP_008760775
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1372,267,661 - 72,301,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769643   ⟹   XP_008767865
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01377,975,392 - 78,066,956 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769644   ⟹   XP_008767866
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01377,975,392 - 78,066,956 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769645   ⟹   XP_008767867
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01377,975,392 - 78,009,072 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598819   ⟹   XP_017454308
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01377,975,392 - 78,066,956 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598820   ⟹   XP_017454309
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01378,010,312 - 78,067,187 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001100660   ⟸   NM_001107190
- UniProtKB: D3ZKH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250167   ⟸   XM_006250105
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006250168   ⟸   XM_006250106
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006250170   ⟸   XM_006250108
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006250169   ⟸   XM_006250107
- Peptide Label: isoform X3
- UniProtKB: D3ZKH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760775   ⟸   XM_008762553
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008767866   ⟸   XM_008769644
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008767865   ⟸   XM_008769643
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008767867   ⟸   XM_008769645
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017454308   ⟸   XM_017598819
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017454309   ⟸   XM_017598820
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000075539   ⟸   ENSRNOT00000087506
RefSeq Acc Id: ENSRNOP00000003671   ⟸   ENSRNOT00000003671
Protein Domains
PID   Rab-GAP TBC

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698933
Promoter ID:EPDNEW_R9452
Type:multiple initiation site
Name:Rabgap1l_1
Description:RAB GTPase activating protein 1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01378,608,907 - 78,608,967EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
13 83401633 83401634 C A snv F344/NRrrc (Illumina) (KNAW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304620 AgrOrtholog
Ensembl Genes ENSRNOG00000002736 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000003671 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000075539 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003671 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000087506 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro Kinesin-like UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  PTyr_interaction_dom UniProtKB/TrEMBL
  Rab-GTPase-TBC_dom UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
  RABGAP1L UniProtKB/TrEMBL
KEGG Report rno:304914 UniProtKB/TrEMBL
NCBI Gene 304914 ENTREZGENE
PANTHER PTHR47219 UniProtKB/TrEMBL
Pfam DUF3694 UniProtKB/TrEMBL
  RabGAP-TBC UniProtKB/TrEMBL
PhenoGen Rabgap1l PhenoGen
PROSITE PID UniProtKB/TrEMBL
  TBC_RABGAP UniProtKB/TrEMBL
SMART PTB UniProtKB/TrEMBL
  TBC UniProtKB/TrEMBL
Superfamily-SCOP RabGAP_TBC UniProtKB/TrEMBL
UniGene Rn.203907 ENTREZGENE
UniProt D3ZKH6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Rabgap1l  RAB GTPase activating protein 1-like  RGD1304620_predicted  similar to rab6 GTPase activating protein (GAP and centrosome-associated) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1304620_predicted  similar to rab6 GTPase activating protein (GAP and centrosome-associated) (predicted)  LOC304914_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC304914_predicted  similar to rab6 GTPase activating protein (GAP and centrosome-associated) (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL