 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
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Analyze GeneStrainQTL List |
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Cellular Component
Molecular Function
Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | RGD automated data pipeline |
| 3. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 4. | RGD automated import pipeline for gene-chemical interactions |
Genomics
Comparative Map Data| Zbtb41 (Rattus norvegicus - Norway rat) |
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| ZBTB41 (Homo sapiens - human) |
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| Zbtb41 (Mus musculus - house mouse) |
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| Zbtb41 (Chinchilla lanigera - long-tailed chinchilla) |
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| ZBTB41 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| ZBTB41 (Canis lupus familiaris - dog) |
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| Zbtb41 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| ZBTB41 (Sus scrofa - pig) |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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| High | ||||||||||||||||
| Medium | 12 | 14 | 22 | 12 | 4 | 8 | 22 | 25 | 8 | 8 | 12 | 28 | 8 | 8 | ||
| Low | 10 | 29 | 1 | 3 | 2 | 3 | 4 | 3 | 3 | 29 | 7 | |||||
| Below cutoff | 1 |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001191670 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006249937 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006249938 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006249939 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006249940 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07021093 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01075388 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01075389 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473958 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ218188 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | NM_001191670 ⟹ NP_001178599 | |||||||||||||||||||
| RefSeq Status: | PROVISIONAL | |||||||||||||||||||
| Type: | CODING | |||||||||||||||||||
| Position: |
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| Sequence: |
ATGAAGAAAAGGAGAAAGGTTACTTCAGATCTTGACGAGAAGATCCATCTAGGCTATCATAAAGhide sequence |
| RefSeq Acc Id: | XM_006249937 ⟹ XP_006249999 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CCCGGCTCTCCGGCCTCTCGCGGCGGCTGGGCGACTGCGCGCGACTGACGTGCCTGGCGAGCGGhide sequence |
| RefSeq Acc Id: | XM_006249938 ⟹ XP_006250000 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
GGAAGTGGGTGGGCGCGGGCGCGAGCGCGCGGGGATCGGAGCTGGGCGGCCCCGAGCCGGCGCGhide sequence |
| RefSeq Acc Id: | XM_006249939 ⟹ XP_006250001 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CCCGGCTCTCCGGCCTCTCGCGGCGGCTGGGCGACTGCGCGCGACTGACGTGCCTGGCGAGCGGhide sequence |
| RefSeq Acc Id: | XM_006249940 ⟹ XP_006250002 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
GCTTGCCCGGACAGCCTGGGAGGGAAGGGTCACGGGCGAGCGCGGTCCCCGCCGACCCGGGCCThide sequence |
Protein Sequences| Protein RefSeqs | NP_001178599 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006249999 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006250000 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006250001 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006250002 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | EDM09622 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001178599 ⟸ NM_001191670 |
| - UniProtKB: | D3ZMX0 (UniProtKB/TrEMBL) |
| - Sequence: |
MKKRRKVTSDLDEKIHLGYHKDSSEENAAVECGQVTYTQSTERPTPEALQCCQELPTSPDQRKLhide sequence |
| RefSeq Acc Id: | XP_006249999 ⟸ XM_006249937 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | D3ZMX0 (UniProtKB/TrEMBL) |
| - Sequence: |
MKKRRKVTSDLDEKIHLGYHKDSSEENAAVECGQVTYTQSTERPTPEALQCCQELPTSPDQRKLhide sequence |
| RefSeq Acc Id: | XP_006250001 ⟸ XM_006249939 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | D3ZMX0 (UniProtKB/TrEMBL) |
| - Sequence: |
MKKRRKVTSDLDEKIHLGYHKDSSEENAAVECGQVTYTQSTERPTPEALQCCQELPTSPDQRKLhide sequence |
| RefSeq Acc Id: | XP_006250000 ⟸ XM_006249938 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | D3ZMX0 (UniProtKB/TrEMBL) |
| - Sequence: |
MKKRRKVTSDLDEKIHLGYHKDSSEENAAVECGQVTYTQSTERPTPEALQCCQELPTSPDQRKLhide sequence |
| RefSeq Acc Id: | XP_006250002 ⟸ XM_006249940 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | D3ZMX0 (UniProtKB/TrEMBL) |
| - Sequence: |
MKKRRKVTSDLDEKIHLGYHKDSSEENAAVECGQVTYTQSTERPTPEALQCCQELPTSPDQRKLhide sequence |
TranscriptomePromoters| RGD ID: | 13698863 | |||||||||
| Promoter ID: | EPDNEW_R9388 | |||||||||
| Type: | initiation region | |||||||||
| Name: | Zbtb41_1 | |||||||||
| Description: | zinc finger and BTB domain containing 41 | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1560834 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000011137 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000015596 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000015596 | ENTREZGENE, UniProtKB/TrEMBL |
| InterPro | BTB/POZ-like | UniProtKB/TrEMBL |
| BTB/POZ_fold | UniProtKB/TrEMBL | |
| Znf_C2H2/integrase_DNA-bd | UniProtKB/TrEMBL | |
| Znf_C2H2_sf | UniProtKB/TrEMBL | |
| KEGG Report | rno:289052 | UniProtKB/TrEMBL |
| NCBI Gene | 289052 | ENTREZGENE |
| Pfam | BTB | UniProtKB/TrEMBL |
| zf-C2H2 | UniProtKB/TrEMBL | |
| PhenoGen | Zbtb41 | PhenoGen |
| PROSITE | BTB | UniProtKB/TrEMBL |
| ZINC_FINGER_C2H2_1 | UniProtKB/TrEMBL | |
| ZINC_FINGER_C2H2_2 | UniProtKB/TrEMBL | |
| SMART | BTB | UniProtKB/TrEMBL |
| ZnF_C2H2 | UniProtKB/TrEMBL | |
| Superfamily-SCOP | BTB/POZ_fold | UniProtKB/TrEMBL |
| SSF57667 | UniProtKB/TrEMBL | |
| UniGene | Rn.51461 | ENTREZGENE |
| UniProt | D3ZMX0 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2008-12-15 | Zbtb41 | zinc finger and BTB domain containing 41 | Zbtb41 | zinc finger and BTB domain containing 41 homolog | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-02-28 | Zbtb41 | zinc finger and BTB domain containing 41 homolog | RGD1560834_predicted | similar to FRBZ1 protein (FRBZ1) (predicted) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2006-03-07 | RGD1560834_predicted | similar to FRBZ1 protein (FRBZ1) (predicted) | LOC289052 | similar to FRBZ1 protein (FRBZ1) | Symbol and Name status set to approved | 1299863 | APPROVED |
| 2006-02-09 | LOC289052 | similar to FRBZ1 protein (FRBZ1) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Zbtb41 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1560834 |
| Created: | 2006-02-09 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-10-16 |
| Status: | ACTIVE |
