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Gene: Tmem183a (transmembrane protein 183A) Rattus norvegicus

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Symbol:

Tmem183a

Name:

transmembrane protein 183A

RGD ID:

1309892

Description:

Predicted to be located in membrane. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to several human genes including TMEM183A (transmembrane protein 183A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

clone MNCb-2755; LOC289034; RGD1309892; similar to RIKEN cDNA 1300007B12; Tmem183; transmembrane protein 183

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM183A (transmembrane protein 183A)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tmem183a (transmembrane protein 183A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem183a (transmembrane protein 183A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM183A (transmembrane protein 183A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM183A (transmembrane protein 183A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem183a (transmembrane protein 183A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM183A (transmembrane protein 183A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM183A (transmembrane protein 183A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem183a (transmembrane protein 183A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TMEM183BP (transmembrane protein 183B, pseudogene)	HGNC	Inparanoid, Panther, PhylomeDB
Alliance orthologs ³
Homo sapiens (human):	TMEM183A (transmembrane protein 183A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tmem183a (transmembrane protein 183A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM183BP (transmembrane protein 183B, pseudogene)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem183a (transmembrane protein 183A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	fsd	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tmem183a	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	48,355,664 - 48,372,437 (-)	NCBI		GRCr8
mRatBN7.2	13	45,803,641 - 45,820,409 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	45,803,639 - 45,820,375 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	48,412,387 - 48,427,608 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	49,700,452 - 49,715,674 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	46,965,560 - 46,980,595 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	51,184,647 - 51,201,401 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	51,184,629 - 51,201,364 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	56,240,994 - 56,257,741 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	47,303,577 - 47,318,813 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	47,317,621 - 47,332,856 (-)	NCBI
Celera	13	46,133,069 - 46,148,305 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tmem183a	Rat	familial adult myoclonic epilepsy 5		ISO	RGD:1320480	8554872	ClinVar Annotator: match by term: Epilepsy, familial adult myoclonic, 5	ClinVar	PMID:28492532
Tmem183a	Rat	gastrointestinal stromal tumor		ISO	RGD:1320480	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
Tmem183a	Rat	Hypokalemic Periodic Paralysis, Type 1		ISO	RGD:1320480	8554872	ClinVar Annotator: match by term: Hypokalemic periodic paralysis, type 1	ClinVar	PMID:28492532
Tmem183a	Rat	parathyroid carcinoma		ISO	RGD:1320480	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532
Tmem183a	Rat	prostate cancer		ISO	RGD:1320480	8554872	ClinVar Annotator: match by term: Malignant tumor of prostate	ClinVar	PMID:23265383

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tmem183a	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	RGD:1320481	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of TMEM183A mRNA	CTD	PMID:36331819
Tmem183a	Rat	1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane	increases expression	ISO	RGD:1320481	6480464	2,2-bis(4-hydroxyphenyl)-1,1,1-trichloroethane results in increased expression of TMEM183A mRNA	CTD	PMID:25575267
Tmem183a	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	RGD:1320481	6480464	[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of TMEM183A mRNA	CTD	PMID:22206623
Tmem183a	Rat	17beta-estradiol	increases expression	ISO	RGD:1320481	6480464	Estradiol results in increased expression of TMEM183A mRNA	CTD	PMID:25575267
Tmem183a	Rat	17beta-estradiol	decreases expression	ISO	RGD:1320481	6480464	Estradiol results in decreased expression of TMEM183A mRNA	CTD	PMID:39298647
Tmem183a	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1320481	6480464	Tetrachlorodibenzodioxin affects the expression of TMEM183A mRNA	CTD	PMID:21570461
Tmem183a	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of TMEM183A mRNA	CTD	PMID:33387578
Tmem183a	Rat	3,3',4,4'-tetrachlorobiphenyl	multiple interactions	ISO	RGD:1320481	6480464	3,4,3',4'-tetrachlorobiphenyl inhibits the reaction [Dietary Fats results in increased expression of TMEM183A mRNA]	CTD	PMID:19467301
Tmem183a	Rat	4,4'-diaminodiphenylmethane	decreases expression	EXP		6480464	4,4'-diaminodiphenylmethane results in decreased expression of TMEM183A mRNA	CTD	PMID:30723492
Tmem183a	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	RGD:1320481	6480464	bisphenol S results in decreased expression of TMEM183A mRNA	CTD	PMID:39298647
Tmem183a	Rat	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of more ...	CTD	PMID:36041667
Tmem183a	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of TMEM183A mRNA	CTD	PMID:30047161
Tmem183a	Rat	amitrole	increases expression	EXP		6480464	Amitrole results in increased expression of TMEM183A mRNA	CTD	PMID:30047161
Tmem183a	Rat	benzo[a]pyrene	increases expression	ISO	RGD:1320481	6480464	Benzo(a)pyrene results in increased expression of TMEM183A mRNA	CTD	PMID:22228805
Tmem183a	Rat	benzo[a]pyrene	decreases expression	ISO	RGD:1320480	6480464	Benzo(a)pyrene results in decreased expression of TMEM183A mRNA	CTD	PMID:26238291
Tmem183a	Rat	bisphenol A	increases expression	ISO	RGD:1320481	6480464	bisphenol A results in increased expression of TMEM183A mRNA	CTD	PMID:25575267\|PMID:33221593
Tmem183a	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of more ...	CTD	PMID:36041667
Tmem183a	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of TMEM183A mRNA	CTD	PMID:25181051
Tmem183a	Rat	bisphenol A	decreases expression	ISO	RGD:1320481	6480464	bisphenol A results in decreased expression of TMEM183A mRNA	CTD	PMID:26063408
Tmem183a	Rat	bisphenol F	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of more ...	CTD	PMID:36041667
Tmem183a	Rat	chlordecone	decreases expression	ISO	RGD:1320481	6480464	Chlordecone results in decreased expression of TMEM183A mRNA	CTD	PMID:33711761
Tmem183a	Rat	crocidolite asbestos	decreases expression	ISO	RGD:1320481	6480464	Asbestos, Crocidolite results in decreased expression of TMEM183A mRNA	CTD	PMID:29279043
Tmem183a	Rat	Dibutyl phosphate	affects expression	ISO	RGD:1320480	6480464	di-n-butylphosphoric acid affects the expression of TMEM183A mRNA	CTD	PMID:37042841
Tmem183a	Rat	diethylstilbestrol	increases expression	ISO	RGD:1320481	6480464	Diethylstilbestrol results in increased expression of TMEM183A mRNA	CTD	PMID:25575267
Tmem183a	Rat	doxorubicin	decreases expression	ISO	RGD:1320480	6480464	Doxorubicin results in decreased expression of TMEM183A mRNA	CTD	PMID:29803840
Tmem183a	Rat	estriol	increases expression	ISO	RGD:1320481	6480464	Estriol results in increased expression of TMEM183A mRNA	CTD	PMID:25575267
Tmem183a	Rat	ethanol	affects splicing	ISO	RGD:1320481	6480464	Ethanol affects the splicing of TMEM183A mRNA	CTD	PMID:30319688
Tmem183a	Rat	fenthion	decreases expression	ISO	RGD:1320481	6480464	Fenthion results in decreased expression of TMEM183A mRNA	CTD	PMID:34813904
Tmem183a	Rat	folic acid	multiple interactions	ISO	RGD:1320481	6480464	[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of TMEM183A mRNA	CTD	PMID:22206623
Tmem183a	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of TMEM183A mRNA	CTD	PMID:33387578
Tmem183a	Rat	GSK-J4	increases expression	ISO	RGD:1320480	6480464	GSK-J4 results in increased expression of TMEM183A mRNA	CTD	PMID:29301935
Tmem183a	Rat	leflunomide	increases expression	ISO	RGD:1320480	6480464	leflunomide results in increased expression of TMEM183A mRNA	CTD	PMID:28988120
Tmem183a	Rat	methidathion	decreases expression	ISO	RGD:1320481	6480464	methidathion results in decreased expression of TMEM183A mRNA	CTD	PMID:34813904
Tmem183a	Rat	methimazole	increases expression	EXP		6480464	Methimazole results in increased expression of TMEM183A mRNA	CTD	PMID:30047161
Tmem183a	Rat	methylparaben	increases expression	ISO	RGD:1320480	6480464	methylparaben results in increased expression of TMEM183A mRNA	CTD	PMID:31745603
Tmem183a	Rat	paracetamol	affects expression	ISO	RGD:1320481	6480464	Acetaminophen affects the expression of TMEM183A mRNA	CTD	PMID:17562736
Tmem183a	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	RGD:1320481	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of TMEM183A mRNA	CTD	PMID:36331819
Tmem183a	Rat	pirinixic acid	increases expression	ISO	RGD:1320481	6480464	pirinixic acid results in increased expression of TMEM183A mRNA	CTD	PMID:17426115
Tmem183a	Rat	sodium arsenite	decreases expression	ISO	RGD:1320480	6480464	sodium arsenite results in decreased expression of TMEM183A mRNA	CTD	PMID:38568856
Tmem183a	Rat	sulfadimethoxine	increases expression	EXP		6480464	Sulfadimethoxine results in increased expression of TMEM183A mRNA	CTD	PMID:30047161
Tmem183a	Rat	testosterone	decreases expression	ISO	RGD:1320481	6480464	Testosterone deficiency results in decreased expression of TMEM183A mRNA	CTD	PMID:33848595
Tmem183a	Rat	titanium dioxide	increases methylation	ISO	RGD:1320481	6480464	titanium dioxide results in increased methylation of TMEM183A enhancer	CTD	PMID:35295148
Tmem183a	Rat	trimellitic anhydride	increases expression	ISO	RGD:1320481	6480464	trimellitic anhydride results in increased expression of TMEM183A mRNA	CTD	PMID:19042947
Tmem183a	Rat	triphenyl phosphate	affects expression	ISO	RGD:1320480	6480464	triphenyl phosphate affects the expression of TMEM183A mRNA	CTD	PMID:37042841

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tmem183a	Rat	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Tmem183a	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Tmem183a	Rat	SCF ubiquitin ligase complex	part_of	IBA	FB:FBgn0033813\|PANTHER:PTN001076908	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Tmem183a	Rat	protein binding	enables	ISO	RGD:1320480	1624291	UniProtKB:O14879 PMID:25416956, PMID:30833792, PMID:32296183	RGD	PMID:25416956\|PMID:30833792\|PMID:32296183

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:15489334

Tmem183a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	48,355,664 - 48,372,437 (-)	NCBI		GRCr8
mRatBN7.2	13	45,803,641 - 45,820,409 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	45,803,639 - 45,820,375 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	48,412,387 - 48,427,608 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	49,700,452 - 49,715,674 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	46,965,560 - 46,980,595 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	51,184,647 - 51,201,401 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	51,184,629 - 51,201,364 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	56,240,994 - 56,257,741 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	47,303,577 - 47,318,813 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	47,317,621 - 47,332,856 (-)	NCBI
Celera	13	46,133,069 - 46,148,305 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

TMEM183A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	203,007,374 - 203,024,848 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	203,007,374 - 203,024,848 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	202,976,502 - 202,993,976 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	201,243,159 - 201,259,291 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	199,708,192 - 199,724,324	NCBI
Celera	1	176,105,772 - 176,122,430 (+)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	174,142,136 - 174,158,805 (+)	NCBI		HuRef
CHM1_1	1	204,398,835 - 204,415,499 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	202,270,081 - 202,287,572 (+)	NCBI		T2T-CHM13v2.0

Tmem183a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	134,273,834 - 134,289,765 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	134,273,835 - 134,289,717 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	134,346,096 - 134,362,012 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	134,346,097 - 134,361,979 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	136,242,674 - 136,258,576 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	136,161,788 - 136,178,366 (-)	NCBI		MGSCv36	mm8
Celera	1	136,958,158 - 136,974,087 (-)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	58.2	NCBI

Tmem183a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	39,029,390 - 39,046,339 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	39,029,390 - 39,044,502 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM183A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	46,353,403 - 46,371,530 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	46,320,432 - 46,337,909 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	178,608,896 - 178,626,376 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	182,903,891 - 182,921,091 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	182,903,898 - 182,919,283 (+)	Ensembl	panpan1.1		panPan2

TMEM183A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	166,640 - 180,680 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	166,974 - 180,660 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	222,297 - 236,341 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	177,085 - 191,140 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	177,096 - 191,163 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	165,322 - 179,368 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	274,851 - 288,898 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	297,360 - 311,411 (-)	NCBI		UU_Cfam_GSD_1.0

Tmem183a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	72,332,097 - 72,343,737 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	1,568,098 - 1,578,392 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	1,566,773 - 1,578,420 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM183A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	113,713,032 - 113,725,847 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	113,713,046 - 113,726,645 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	125,173,389 - 125,185,839 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM183A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	26,329,213 - 26,346,850 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	26,328,841 - 26,346,750 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	27,104,474 - 27,122,123 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem183a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	7,807,543 - 7,822,825 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624807	7,807,543 - 7,822,789 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Tmem183a
81 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	191
Count of miRNA genes:	143
Interacting mature miRNAs:	165
Transcripts:	ENSRNOT00000005272
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34663461	87525369	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	9313465	54313465	Rat
6893344	Cm79	Cardiac mass QTL 79	1.5	0.04	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	43720770	62022792	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	22301875	67301875	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	37415584	80753406	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	9831541	54831541	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	14915655	59915655	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	9831541	54831541	Rat
12879441	Bp396	Blood pressure QTL 396			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45699983	90699983	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39754544	84754544	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
70170	Eae14	Experimental allergic encephalomyelitis QTL 14		0.0024	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	23203448	68203448	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	17694436	53050594	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34535218	79535218	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	38433408	83433408	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	11929449	46193066	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
4145117	Mcs27	Mammary carcinoma susceptibility QTL 27		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	13	43437904	47841255	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	23692969	68692969	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	31241331	93395974	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	32284471	77284471	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	31241331	58363171	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	37262092	82262092	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	37415584	82415584	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	23692969	68692969	Rat
12879472	Bp399	Blood pressure QTL 399			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45228358	47841255	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	15158722	60158722	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	9313465	54313465	Rat

BF397521

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	92,688,747 - 92,688,895 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	96,875,638 - 96,875,785	NCBI	Rnor6.0
Rnor_5.0	6	106,306,959 - 106,307,106	UniSTS	Rnor5.0
RGSC_v3.4	6	96,483,108 - 96,483,255	UniSTS	RGSC3.4
Celera	6	91,145,414 - 91,145,561	UniSTS
RH 3.4 Map	6	656.4	UniSTS
Cytogenetic Map	6	q24	UniSTS
Cytogenetic Map	13	q13	UniSTS

SHGC-155248

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	6	98,424,562 - 98,424,797 (+)	Marker Load Pipeline
mRatBN7.2	6	92,688,759 - 92,688,994 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	96,875,650 - 96,875,884	NCBI	Rnor6.0
Rnor_5.0	6	106,306,971 - 106,307,205	UniSTS	Rnor5.0
RGSC_v3.4	6	96,483,120 - 96,483,354	UniSTS	RGSC3.4
Celera	6	91,145,426 - 91,145,660	UniSTS
Cytogenetic Map	6	q24	UniSTS
Cytogenetic Map	13	q13	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001013871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC117152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005272 ⟹ ENSRNOP00000005272

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	45,805,096 - 45,820,367 (-)	Ensembl
Rnor_6.0 Ensembl	13	51,186,097 - 51,201,331 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078990 ⟹ ENSRNOP00000068555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	45,803,639 - 45,820,375 (-)	Ensembl
Rnor_6.0 Ensembl	13	51,184,629 - 51,201,364 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100649 ⟹ ENSRNOP00000096186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	45,803,872 - 45,820,367 (-)	Ensembl

RefSeq Acc Id:

NM_001013871 ⟹ NP_001013893

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,357,112 - 48,372,348 (-)	NCBI
mRatBN7.2	13	45,805,095 - 45,820,334 (-)	NCBI
Rnor_6.0	13	51,186,095 - 51,201,331 (-)	NCBI
Rnor_5.0	13	56,240,994 - 56,257,741 (-)	NCBI
RGSC_v3.4	13	47,303,577 - 47,318,813 (-)	RGD
Celera	13	46,133,069 - 46,148,305 (-)	RGD

Sequence:

show sequence

CCCGCGGCTCCGGGAGCCGGCTCTCGGGGCCGAGAAATGGCCCGGGGCCCCGGCCAGCTAAGCGGGCCTCGTCCGGACACCGTCACCATGCCCAAGAGAGGAAAGCGGCTCAAGTTCCGGGCCCACGA
CGCCTGCTCTGGCCGAGTGACTGTGGCGGACTATGCCAACTCGGATCCGGCGGTGGTGAGGTCTGGACGGGTCAAGAAAGCCGTGGCCAACGCTGTTCAGCAGGAAGTAAAATCTCTCTGTGGCTTGG
AAGCGTCCCAGGTTCCTGCGGAAGAGGCTCTCTCTGGGGTGGGTGAGCCGAGTGACATCTTGGACAGCAGTGATGAGATGGACGCCCAGGAGGAAAGCACTCAGGAAAGATCTGTCTCCAGAAAAAAG
AAAAGCAAGAGACACAAAGAAGACCTGGATGGGGCTGGAGGAGAAGAGTATCCTATGGATATTTGGCTGTTGCTGGCTTCCTATATCCGTCCTGAGGACATTGTGAATTTTTCCCTGATTTGTAAGAA
TGCTTGGACTGTCACTTGCACTGCTGCCTTTTGGACCAGGTTGTACCGAAGGCACTACACGCTGGATGCTTCTCTACCTTTGCGGCTGCGACCAGAGTCCATGGAGAAGCTGCGCTGTCTCCGGGCAT
GTGTGATCCGATCTCTGTACCATATGTATGAACCGTTTGCTGCTCGAATCTCCAAGAATCCTGCCATTCCAGAAAGCACTCCCAGCACACTGAAGAATTCCAAATGCTTACTTTTCTGGTGCAGAAAG
ATTGTTGGGAACAGACAAGAACCAATGTGGGAGTTCAACTTCAAGTTCAAAAAACAGTCCCCTAGATTAAAGAGCAAGTGTATGGAACGGTTGCAACCGCCCATTCAGTATCAAGATGTTCACACCAA
CCCTGACCAGGACTGCTGCCTGCTGCAGGTCACCACCCTCAACTTCATCTTTATTCCTATTGTCATGGGAATGATATTTACCTTGTTTACTATTAATGTGAGTACAGACATGCGGCATCATCGAGTGA
GACTGGTGTTCCAAGATTCTCCCGTCCGTGGTGGTCAGCATCTGCGCAGTGAACAGGGTGTGCAAGTCGTCCTGGACCCAGTGCACAGTGTTCGGCTCTTTGACTGGTGGCATCCGCAGTATCCGTTC
TCCCTGAGAGCATAGTTCCTGCTTCCCATCCCTGGGGATGGCTTCCAGTCTAGTCCATTAGTGATCAGATTCTGTTTGGAGGGGGCAGCTGGATCGTGTAGCTGATTAGCGATGCACAGGCTGTTTGG
GTTCCTGGGGCTCCTATTACAGGAGGTGTGGAGAGGTTGAATCAAGAGGAAAACCAACTATGATTTATAAACATTTTAATGTAAAATTTGCATATTTGAAAGGAGAAACCCGGCCTCATTTCCTGTGT
TAAACCTCAGTTGGTGCTGTTGAGTTTGTTTTTATTCTTTTATCTCGGCAAATGGATGATCTTGTGTTAGGGGAAGTTAAACTTACTCCTCAAGGAAGAACATTTGCCCTTAGGGATCAGAGGAACCC
AGAGGCTTAAAACAGTTGTTCCAATGTTGCTGCTCCTCAAATTCAAGTGAATATTTTTTCTTTTCCCTTTACCCTTCTCCAGAAATAAAGCAGGTGACAGGGTTATCAGAAAAAAAAAAAAAAAAAAA
AAAAAAA

hide sequence

RefSeq Acc Id:

XM_006249849 ⟹ XP_006249911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,355,664 - 48,372,415 (-)	NCBI
mRatBN7.2	13	45,803,641 - 45,820,408 (-)	NCBI
Rnor_6.0	13	51,184,647 - 51,201,401 (-)	NCBI
Rnor_5.0	13	56,240,994 - 56,257,741 (-)	NCBI

Sequence:

show sequence

AGTCCTCGCCTGAGTCCTCGCGATAGCCGCAGCCTCTGTGCGGGATGGCCGCGGAGCCGGGTGG
AAGTGCCCCGCGGCTCCGGGAGCCGGCTCTCGGGGCCGAGAAATGGCCCGGGGCCCCGGCCAGCTAAGCGGGCCTCGTCCGGACACCGTCACCATGCCCAAGAGAGGAAAGCGGCTCAAGTTCCGGGC
CCACGACGCCTGCTCTGGCCGAGTGACTGTGGCGGACTATGCCAACTCGGATCCGGCGGTGGTGAGGTCTGGACGGGTCAAGAAAGCCGTGGCCAACGCTGTTCAGCAGGAAGTAAAATCTCTCTGTG
GCTTGGAAGCGTCCCAGGTTCCTGCGGAAGAGGCTCTCTCTGGGGTGGGTGAGCCGAGTGACATCTTGGACAGCAGTGATGAGATGGACGCCCAGGAGGAAAGCACTCAGGAAAGATCTGTCTCCAGA
AAAAAGAAAAGCAAGAGACACAAAGACCTGGATGGGGCTGGAGGAGAAGAGTATCCTATGGATATTTGGCTGTTGCTGGCTTCCTATATCCGTCCTGAGGACATTGTGAATTTTTCCCTGATTTGTAA
GAATGCTTGGACTGTCACTTGCACTGCTGCCTTTTGGACCAGGTTGTACCGAAGGCACTACACGCTGGATGCTTCTCTACCTTTGCGGCTGCGACCAGAGTCCATGGAGAAGCTGCGCTGTCTCCGGG
CATGTGTGATCCGATCTCTGTACCATATGTATGAACCGTTTGCTGCTCGAATCTCCAAGAATCCTGCCATTCCAGAAAGCACTCCCAGCACACTGAAGAATTCCAAATGCTTACTTTTCTGGTGCAGA
AAGATTGTTGGGAACAGACAAGAACCAATGTGGGAGTTCAACTTCAAGTTCAAAAAACAGTCCCCTAGATTAAAGAGCAAGTGTATGGAACGGTTGCAACCGCCCATTCAGTATCAAGATGTTCACAC
CAACCCTGACCAGGACTGCTGCCTGCTGCAGGTCACCACCCTCAACTTCATCTTTATTCCTATTGTCATGGGAATGATATTTACCTTGTTTACTATTAATGTGAGTACAGACATGCGGCATCATCGAG
TGAGACTGGTGTTCCAAGATTCTCCCGTCCGTGGTGGTCAGCATCTGCGCAGTGAACAGGGTGTGCAAGTCGTCCTGGACCCAGTGCACAGTGTTCGGCTCTTTGACTGGTGGCATCCGCAGTATCCG
TTCTCCCTGAGAGCATAGTTCCTGCTTCCCATCCCTGGGGATGGCTTCCAGTCTAGTCCATTAGTGATCAGATTCTGTTTGGAGGGGGCAGCTGGATCGTGTAGCTGATTAGCGATGCACAGGCTGTT
TGGGTTCCTGGGGCTCCTATTACAGGAGGTGTGGAGAGGTTGAATCAAGAGGAAAACCAACTATGATTTATAAACATTTTAATGTAAAATTTGCATATTTGAAAGGAGAAACCCGGCCTCATTTCCTG
TGTTAAACCTCAGTTGGTGCTGTTGAGTTTGTTTTTATTCTTTTATCTCGGCAAATGGATGATCTTGTGTTAGGGGAAGTTAAACTTACTCCTCAAGGAAGAACATTTGCCCTTAGGGATCAGAGGAA
CCCAGAGGCTTAAAACAGTTGTTCCAATGTTGCTGCTCCTCAAATTCAAGTGAATATTTTTTCTTTTCCCTTTACCCTTCTCCAGAAATAAAGCAGGTGACAGGGTTATCAGAATCTTATAAGATTGA
CTTGTGCATCTTTTTAAAAAATGCTTTTTGGATATTTATTACATGAATATTGATTGTTTTGATGATTTTGTATTTTGGGTTTTGTTTTATTGCATGAGGCTTGACAGTGATGGTAATAATTATGTGCC
CCTCGTACTGTTCTAAGAACTTTCTAGATTGTGTCTCTGATCCTTGTGTTTAGCAAGGTAGTTGAAACCCTTCCGGTTTTATGGTTGAGAATCTGAATCATTGAGTTACCCATGGCCAGAACTATTGG
TCCACGCAGAGCCAGGATTCTTCTTTTTTGCTATACCACAACTTCAAAGGCCAGTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTGTGGTACATAGTGGTAAAAAGGAGTAGGCAGAGTATGATTAAA
AGTAAAGCAATGAGCTATTTGAATCTTTCAGATATGCATTAACTGAAAGGTAGAACATAGTTTAGGAAGGATTTGGTGTTTTCCTTAAATTGTTAGACTTTATTATGCTAAATTCTCAAAAAATACAT
TGCATGTTGAAAGCAGCCTTCAACTAGAAGCAATTAGTGGCTTTTCTCTGCCCTGTCCTGTCCTTTGAGATCTTTTGTTTTTCCTTTTTAAGTCATCCTGTGTGCGTTCAGGATCCTGGTTTTCTGTT
CATACAGAAATGTTGACACCGTCCTTGGTCAAAGTTCTTTACTGTCACAGGCATGCTCTGAGAAAAGGACATGGGTGGGTTTTGTTTATTTCTCTTGCTAAGAAGAAAGTCTTACTGCTTCCTTTCCC
ACCTGCATGTGGCAGAAGACGCACATTAAGACACTTCTCTCATACTCAAGATCTTGAGTTCATTCTTTAGCACTGCAGTCCAGCCCCCACAAAAGTAGTCCTTTTGAGACAGGGTCTTGCTATGTAGC
CCAGGCTGGCCTTGAACTTAATCCTCTTACTTTAGCTGCCTGGAGTGTTGGGATTATAGGTGTGAGTCACCAGACAGGACAAAGACAGAAAATATTCTTTAAACATAAAAATATTGTGGGGTGGATAC
TATTGTTGGCTAAACTGCTAAATTAGTCTGCTGGTTCTTATCACTTTCCCCACCCCATGCTATTTACAGAACATCCTTTAGCATCTGTTTAATACTGCTGCTGACAGCTAGCCTTATCCCACACTGAG
GGGAATACTGTCACGGTTGAACAGAAAGTGAGCCTGGGTCAATAAAAAACTACCACCAGAATTTGGGTACTTAATTAACAAAAGTAAACAAAAACCCAAGGACAGTAAGCACTTCACAGATCTCTGCA
ATCAAAAGTTGCCTCTGAAGCAGAAGAAAAGAAGCACAGAGCCTGGAGTTCCCTGAACAAAAGATGCCATGGAGCAGGGGAGTTGTCCTCGTGGATTGTGTGCCTCCCATTTAGGTTTGCCTTAAGTG
GGTGAAATAAATGTGGCTTAATTGTT

hide sequence

RefSeq Acc Id:

XM_006249850 ⟹ XP_006249912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,355,664 - 48,372,437 (-)	NCBI
mRatBN7.2	13	45,803,641 - 45,820,409 (-)	NCBI
Rnor_6.0	13	51,184,647 - 51,201,401 (-)	NCBI
Rnor_5.0	13	56,240,994 - 56,257,741 (-)	NCBI

Sequence:

show sequence

AGTCCTCGCCTGAGTCCTCGCGATAGCCGCAGCCTCTGTGCGGGATGGCCGCGGAGCCGGGTGG
AAGTGCCCCGCGGCTCCGGGAGCCGGCTCTCGGGGCCGAGAAATGGCCCGGGGCCCCGGCCAGCTAAGCGGGCCTCGTCCGGACACCGTCACCATGCCCAAGAGAGGAAAGCGGCTCAAGTTCCGGGC
CCACGACGCCTGCTCTGGCCGAGTGACTGTGGCGGACTATGCCAACTCGGATCCGGCGGTGGTGAGGTCTGGACGGGTCAAGAAAGCCGTGGCCAACGCTGTTCAGCAGGAAGTAAAATCTCTCTGTG
GCTTGGAAGCGTCCCAGGTTCCTGCGGAAGAGGCTCTCTCTGGGGTGGGTGAGCCGAGTGACATCTTGGACAGCAGTGATGAGATGGACGCCCAGGAGGAAAGCACTCAGGAAAGATCTGTCTCCAGA
AAAAAGAAAAGCAAGAGACACAAAGAAGACCTGGATGGGGCTGGAGGAGAAGAGTATCCTATGGATATTTGGCTGTTGCTGGCTTCCTATATCCGTCCTGAGGACATTGTGAATTTTTCCCTGATTTG
TAAGAATGCTTGGACTGTCACTTGCACTGCTGCCTTTTGGACCAGGTTGTACCGAAGGCACTACACGCTGGATGCTTCTCTACCTTTGCGGCTGCGACCAGAGTCCATGGAGAAGCTGCGCTGTCTCC
GGGCATGTGTGATCCGATCTCTGTACCATATGTATGAACCGTTTGCTGCTCGAATCTCCAAGAATCCTGCCATTCCAGAAAGCACTCCCAGCACACTGAAGAATTCCAAATCCCCTAGATTAAAGAGC
AAGTGTATGGAACGGTTGCAACCGCCCATTCAGTATCAAGATGTTCACACCAACCCTGACCAGGACTGCTGCCTGCTGCAGGTCACCACCCTCAACTTCATCTTTATTCCTATTGTCATGGGAATGAT
ATTTACCTTGTTTACTATTAATGTGAGTACAGACATGCGGCATCATCGAGTGAGACTGGTGTTCCAAGATTCTCCCGTCCGTGGTGGTCAGCATCTGCGCAGTGAACAGGGTGTGCAAGTCGTCCTGG
ACCCAGTGCACAGTGTTCGGCTCTTTGACTGGTGGCATCCGCAGTATCCGTTCTCCCTGAGAGCATAGTTCCTGCTTCCCATCCCTGGGGATGGCTTCCAGTCTAGTCCATTAGTGATCAGATTCTGT
TTGGAGGGGGCAGCTGGATCGTGTAGCTGATTAGCGATGCACAGGCTGTTTGGGTTCCTGGGGCTCCTATTACAGGAGGTGTGGAGAGGTTGAATCAAGAGGAAAACCAACTATGATTTATAAACATT
TTAATGTAAAATTTGCATATTTGAAAGGAGAAACCCGGCCTCATTTCCTGTGTTAAACCTCAGTTGGTGCTGTTGAGTTTGTTTTTATTCTTTTATCTCGGCAAATGGATGATCTTGTGTTAGGGGAA
GTTAAACTTACTCCTCAAGGAAGAACATTTGCCCTTAGGGATCAGAGGAACCCAGAGGCTTAAAACAGTTGTTCCAATGTTGCTGCTCCTCAAATTCAAGTGAATATTTTTTCTTTTCCCTTTACCCT
TCTCCAGAAATAAAGCAGGTGACAGGGTTATCAGAATCTTATAAGATTGACTTGTGCATCTTTTTAAAAAATGCTTTTTGGATATTTATTACATGAATATTGATTGTTTTGATGATTTTGTATTTTGG
GTTTTGTTTTATTGCATGAGGCTTGACAGTGATGGTAATAATTATGTGCCCCTCGTACTGTTCTAAGAACTTTCTAGATTGTGTCTCTGATCCTTGTGTTTAGCAAGGTAGTTGAAACCCTTCCGGTT
TTATGGTTGAGAATCTGAATCATTGAGTTACCCATGGCCAGAACTATTGGTCCACGCAGAGCCAGGATTCTTCTTTTTTGCTATACCACAACTTCAAAGGCCAGTTTCTTTCTTTCTTTTTTTTTTTT
TTTTTTTGTGGTACATAGTGGTAAAAAGGAGTAGGCAGAGTATGATTAAAAGTAAAGCAATGAGCTATTTGAATCTTTCAGATATGCATTAACTGAAAGGTAGAACATAGTTTAGGAAGGATTTGGTG
TTTTCCTTAAATTGTTAGACTTTATTATGCTAAATTCTCAAAAAATACATTGCATGTTGAAAGCAGCCTTCAACTAGAAGCAATTAGTGGCTTTTCTCTGCCCTGTCCTGTCCTTTGAGATCTTTTGT
TTTTCCTTTTTAAGTCATCCTGTGTGCGTTCAGGATCCTGGTTTTCTGTTCATACAGAAATGTTGACACCGTCCTTGGTCAAAGTTCTTTACTGTCACAGGCATGCTCTGAGAAAAGGACATGGGTGG
GTTTTGTTTATTTCTCTTGCTAAGAAGAAAGTCTTACTGCTTCCTTTCCCACCTGCATGTGGCAGAAGACGCACATTAAGACACTTCTCTCATACTCAAGATCTTGAGTTCATTCTTTAGCACTGCAG
TCCAGCCCCCACAAAAGTAGTCCTTTTGAGACAGGGTCTTGCTATGTAGCCCAGGCTGGCCTTGAACTTAATCCTCTTACTTTAGCTGCCTGGAGTGTTGGGATTATAGGTGTGAGTCACCAGACAGG
ACAAAGACAGAAAATATTCTTTAAACATAAAAATATTGTGGGGTGGATACTATTGTTGGCTAAACTGCTAAATTAGTCTGCTGGTTCTTATCACTTTCCCCACCCCATGCTATTTACAGAACATCCTT
TAGCATCTGTTTAATACTGCTGCTGACAGCTAGCCTTATCCCACACTGAGGGGAATACTGTCACGGTTGAACAGAAAGTGAGCCTGGGTCAATAAAAAACTACCACCAGAATTTGGGTACTTAATTAA
CAAAAGTAAACAAAAACCCAAGGACAGTAAGCACTTCACAGATCTCTGCAATCAAAAGTTGCCTCTGAAGCAGAAGAAAAGAAGCACAGAGCCTGGAGTTCCCTGAACAAAAGATGCCATGGAGCAGG
GGAGTTGTCCTCGTGGATTGTGTGCCTCCCATTTAGGTTTGCCTTAAGTGGGTGAAATAAATGTGGCTTAATTGTT

hide sequence

RefSeq Acc Id:

XR_005492211

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,361,614 - 48,372,437 (-)	NCBI
mRatBN7.2	13	45,809,577 - 45,820,408 (-)	NCBI

RefSeq Acc Id:

XR_005492212

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,361,614 - 48,372,437 (-)	NCBI
mRatBN7.2	13	45,807,244 - 45,820,408 (-)	NCBI


Protein RefSeqs	NP_001013893	(Get FASTA)	NCBI Sequence Viewer
	XP_006249911	(Get FASTA)	NCBI Sequence Viewer
	XP_006249912	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79375	(Get FASTA)	NCBI Sequence Viewer
	EDM09731	(Get FASTA)	NCBI Sequence Viewer
	EDM09732	(Get FASTA)	NCBI Sequence Viewer
	EDM09733	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005272
	ENSRNOP00000096186
	ENSRNOP00000096186.1
GenBank Protein	Q68FS7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013893 ⟸ NM_001013871

- UniProtKB:

Q68FS7 (UniProtKB/Swiss-Prot), A6ICB4 (UniProtKB/TrEMBL), A0A0G2JT36 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MARGPGQLSGPRPDTVTMPKRGKRLKFRAHDACSGRVTVADYANSDPAVVRSGRVKKAVANAVQQEVKSLCGLEASQVPAEEALSGVGEPSDILDSSDEMDAQEESTQERSVSRKKKSKRHKEDLDGA
GGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTLDASLPLRLRPESMEKLRCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLFWCRKIVGNRQEPMWEF
NFKFKKQSPRLKSKCMERLQPPIQYQDVHTNPDQDCCLLQVTTLNFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVRGGQHLRSEQGVQVVLDPVHSVRLFDWWHPQYPFSLRA

hide sequence

RefSeq Acc Id:	XP_006249912 ⟸ XM_006249850
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2Q253 (UniProtKB/TrEMBL), A0A0G2JT36 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARGPGQLSGPRPDTVTMPKRGKRLKFRAHDACSGRVTVADYANSDPAVVRSGRVKKAVANAVQQEVKSLCGLEASQVPAEEALSGVGEPSDILDSSDEMDAQEESTQERSVSRKKKSKRHKEDLDGA GGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTLDASLPLRLRPESMEKLRCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKSPRLKSKCMERLQPPIQYQD VHTNPDQDCCLLQVTTLNFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVRGGQHLRSEQGVQVVLDPVHSVRLFDWWHPQYPFSLRA hide sequence

RefSeq Acc Id:	XP_006249911 ⟸ XM_006249849
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JT36 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARGPGQLSGPRPDTVTMPKRGKRLKFRAHDACSGRVTVADYANSDPAVVRSGRVKKAVANAVQQEVKSLCGLEASQVPAEEALSGVGEPSDILDSSDEMDAQEESTQERSVSRKKKSKRHKDLDGAG GEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTLDASLPLRLRPESMEKLRCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLFWCRKIVGNRQEPMWEFN FKFKKQSPRLKSKCMERLQPPIQYQDVHTNPDQDCCLLQVTTLNFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVRGGQHLRSEQGVQVVLDPVHSVRLFDWWHPQYPFSLRA hide sequence

Ensembl Acc Id:

ENSRNOP00000005272 ⟸ ENSRNOT00000005272

Ensembl Acc Id:

ENSRNOP00000068555 ⟸ ENSRNOT00000078990

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q68FS7-F1-model_v2	AlphaFold	Q68FS7	1-376	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13698834

Promoter ID:

EPDNEW_R9353

Type:

multiple initiation site

Name:

Tmem183a_1

Description:

transmembrane protein 183A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	51,201,368 - 51,201,428	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-18242	BioCyc
Ensembl Genes	ENSRNOG00000003594	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000005272	ENTREZGENE
	ENSRNOT00000100649	ENTREZGENE
	ENSRNOT00000100649.1	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7110239	IMAGE-MGC_LOAD
InterPro	F-box-like_dom_sf	UniProtKB/Swiss-Prot
	TMEM183	UniProtKB/Swiss-Prot
KEGG Report	rno:289034	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94871	IMAGE-MGC_LOAD
NCBI Gene	289034	ENTREZGENE
PANTHER	PTHR20988	UniProtKB/Swiss-Prot
	TRANSMEMBRANE PROTEIN 183A-RELATED	UniProtKB/Swiss-Prot
PhenoGen	Tmem183a	PhenoGen
RatGTEx	ENSRNOG00000003594	RatGTEx
Superfamily-SCOP	SSF81383	UniProtKB/Swiss-Prot
UniProt	A0A0G2JT36	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2Q253	ENTREZGENE, UniProtKB/TrEMBL
	A6ICB4	ENTREZGENE, UniProtKB/TrEMBL
	Q68FS7	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-26	Tmem183a	transmembrane protein 183A	RGD1309892	similar to RIKEN cDNA 1300007B12; clone MNCb-2755	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1309892	similar to RIKEN cDNA 1300007B12; clone MNCb-2755	RGD1309892_predicted	similar to RIKEN cDNA 1300007B12; clone MNCb-2755 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1309892_predicted	similar to RIKEN cDNA 1300007B12; clone MNCb-2755 (predicted)	LOC289034_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC289034_predicted	similar to RIKEN cDNA 1300007B12; clone MNCb-2755 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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