Tmem183a (transmembrane protein 183A) - Rat Genome Database

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Gene: Tmem183a (transmembrane protein 183A) Heterocephalus glaber
Analyze
Symbol: Tmem183a
Name: transmembrane protein 183A
RGD ID: 18908845
Description: INVOLVED IN regulation of protein stability (inferred); ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); SCF ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,807,543 - 7,822,825 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248077,807,543 - 7,822,789 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tmem183a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,807,543 - 7,822,825 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248077,807,543 - 7,822,789 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TMEM183A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,007,374 - 203,024,848 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,007,374 - 203,024,848 (+)EnsemblGRCh38hg38GRCh38
GRCh371202,976,502 - 202,993,976 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,243,159 - 201,259,291 (+)NCBINCBI36Build 36hg18NCBI36
Build 341199,708,192 - 199,724,324NCBI
Celera1176,105,772 - 176,122,430 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,142,136 - 174,158,805 (+)NCBIHuRef
CHM1_11204,398,835 - 204,415,499 (+)NCBICHM1_1
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBIT2T-CHM13v2.0
Tmem183a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,273,834 - 134,289,765 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,273,835 - 134,289,717 (-)EnsemblGRCm39 Ensembl
GRCm381134,346,096 - 134,362,012 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,346,097 - 134,361,979 (-)EnsemblGRCm38mm10GRCm38
MGSCv371136,242,674 - 136,258,576 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361136,161,788 - 136,178,366 (-)NCBIMGSCv36mm8
Celera1136,958,158 - 136,974,087 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.2NCBI
Tmem183a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,355,664 - 48,372,437 (-)NCBIGRCr8
mRatBN7.21345,803,641 - 45,820,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,803,639 - 45,820,375 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1348,412,387 - 48,427,608 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,700,452 - 49,715,674 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,965,560 - 46,980,595 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,184,647 - 51,201,401 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,184,629 - 51,201,364 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01356,240,994 - 56,257,741 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41347,303,577 - 47,318,813 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11347,317,621 - 47,332,856 (-)NCBI
Celera1346,133,069 - 46,148,305 (-)NCBICelera
Cytogenetic Map13q13NCBI
Tmem183a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,029,390 - 39,046,339 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,029,390 - 39,044,502 (+)NCBIChiLan1.0ChiLan1.0
TMEM183A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2146,353,403 - 46,371,530 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1146,320,432 - 46,337,909 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01178,608,896 - 178,626,376 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11182,903,891 - 182,921,091 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,903,898 - 182,919,283 (+)Ensemblpanpan1.1panPan2
TMEM183A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17166,640 - 180,680 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl7166,974 - 180,660 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha7222,297 - 236,341 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.07177,085 - 191,140 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl7177,096 - 191,163 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17165,322 - 179,368 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07274,851 - 288,898 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07297,360 - 311,411 (-)NCBIUU_Cfam_GSD_1.0
Tmem183a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,332,097 - 72,343,737 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365671,568,098 - 1,578,392 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365671,566,773 - 1,578,420 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM183A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9113,713,032 - 113,725,847 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19113,713,046 - 113,726,645 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29125,173,389 - 125,185,839 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM183A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12526,329,213 - 26,346,850 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2526,328,841 - 26,346,750 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605527,104,474 - 27,122,123 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000011527   ⟹   ENSHGLP00000011400
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248077,807,543 - 7,822,825 (-)Ensembl
RefSeq Acc Id: XM_004862201   ⟹   XP_004862258
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248077,807,543 - 7,822,789 (-)NCBI
RefSeq Acc Id: XM_004862202   ⟹   XP_004862259
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248077,807,543 - 7,822,789 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004862258 (Get FASTA)   NCBI Sequence Viewer  
  XP_004862259 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011400
GenBank Protein JAO00877 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004862259   ⟸   XM_004862202
- Peptide Label: isoform X2
- UniProtKB: G5B372 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004862258   ⟸   XM_004862201
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JEB3 (UniProtKB/TrEMBL),   G5B372 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000011400   ⟸   ENSHGLT00000011527


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008174 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011527 ENTREZGENE
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  TMEM183 UniProtKB/TrEMBL
KEGG Report hgl:101706703 UniProtKB/TrEMBL
NCBI Gene Tmem183a ENTREZGENE
PANTHER PTHR20988 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 183A-RELATED UniProtKB/TrEMBL
Superfamily-SCOP SSF81383 UniProtKB/TrEMBL
UniProt A0A0P6JEB3 ENTREZGENE, UniProtKB/TrEMBL
  G5B372 ENTREZGENE, UniProtKB/TrEMBL