Chit1 (chitinase 1) - Rat Genome Database

Name: Chit1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Chit1 (chitinase 1) Rattus norvegicus

Analyze

Symbol:

Chit1

Name:

chitinase 1

RGD ID:

1305646

Description:

Predicted to have chitin binding activity and endochitinase activity. Predicted to be involved in chitin catabolic process. Predicted to localize to extracellular space. Orthologous to human CHIT1 (chitinase 1); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; sialic acid storage disease pathway; INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

chitinase 1 (chitotriosidase); chitotriosidase variant 1; chitotriosidase variant 2; chitotriosidase variant 3; chitotriosidase variant 4; chitotriosidase variant 5; chitotriosidase-1; LOC289032

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CHIT1 (chitinase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Chit1 (chitinase 1 (chitotriosidase))	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Chit1 (chitinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CHIT1 (chitinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Chit1 (chitinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CHIT1 (chitinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CHIT1 (chitinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Chit1 (chitinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CHIT1 (chitinase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Chit1 (chitinase 1 (chitotriosidase))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	chia.1 (chitinase, acidic.1)	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Danio rerio (zebrafish):	chia.3 (chitinase, acidic.3)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	chia.5 (chitinase, acidic.5)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	chia.2 (chitinase, acidic.2)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	CTS2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Cht7	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	cht-1	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Cht11	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	Idgf1	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	Idgf2	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	Idgf3	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	Idgf4	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	Idgf6	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	Cht10	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	45,565,841 - 45,613,593 (+)	NCBI
Rnor_6.0 Ensembl	13	50,974,872 - 50,994,643 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	13	50,947,020 - 50,994,644 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	13	56,000,134 - 56,046,972 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	47,095,240 - 47,109,367 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	13	47,059,518 - 47,123,204 (+)	NCBI
Celera	13	45,894,357 - 45,941,716 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

CHITOTRIOSIDASE DEFICIENCY (ISO)

Gaucher's disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

4,4'-sulfonyldiphenol (ISO)

5-azacytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

ALLOSAMIDIN (ISO)

arsenous acid (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

buta-1,3-diene (ISO)

chitin (ISO)

diarsenic trioxide (ISO)

dorsomorphin (ISO)

furan (EXP)

hypochlorous acid (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

propanal (ISO)

SB 431542 (ISO)

succimer (ISO)

titanium dioxide (ISO)

topotecan (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

chitin catabolic process (IBA,ISO)

Cellular Component

extracellular region (IBA)

extracellular space (ISO)

Molecular Function

chitin binding (IBA)

chitinase activity (IBA,ISO)

endochitinase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

amino sugar metabolic pathway (IEA,ISO)

french type sialuria pathway (ISO)

nucleotide sugar metabolic pathway (IEA)

sialic acid storage disease pathway (ISO)

Tay-Sachs disease pathway (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

albuminuria (IAGP)

salt-sensitive hypertension (IAGP)

References

References - curated


1.	Flister MJ, etal., Hypertension. 2013 Apr;61(4):850-6. doi: 10.1161/HYPERTENSIONAHA.111.01008. Epub 2013 Mar 4.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA data from the GO Consortium
4.	MGD data from the GO Consortium
5.	OMIM Disease Annotation Pipeline
6.	Pipeline to import KEGG annotations from KEGG into RGD
7.	Pipeline to import SMPDB annotations from SMPDB into RGD
8.	RGD automated data pipeline
9.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11085997	PMID:17852345	PMID:19725875	PMID:23558346	PMID:24155872

Genomics

Candidate Gene Status

Chit1 is a candidate Gene for QTL Bp395

Comparative Map Data

Chit1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	45,565,841 - 45,613,593 (+)	NCBI
Rnor_6.0 Ensembl	13	50,974,872 - 50,994,643 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	13	50,947,020 - 50,994,644 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	13	56,000,134 - 56,046,972 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	47,095,240 - 47,109,367 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	13	47,059,518 - 47,123,204 (+)	NCBI
Celera	13	45,894,357 - 45,941,716 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

CHIT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	203,212,827 - 203,273,641 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	203,216,079 - 203,229,673 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	203,185,207 - 203,198,801 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	1	203,185,207 - 203,198,860 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	201,452,418 - 201,465,399 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	199,917,451 - 199,930,433	NCBI
Celera	1	176,314,462 - 176,328,121 (-)	NCBI
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	174,350,361 - 174,364,019 (-)	NCBI		HuRef
CHM1_1	1	204,607,543 - 204,621,196 (-)	NCBI		CHM1_1

Chit1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	134,038,980 - 134,079,279 (+)	NCBI	GRCm39		mm39
GRCm38	1	134,111,242 - 134,151,541 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	134,111,242 - 134,151,540 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	136,007,819 - 136,048,013 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	1	135,927,653 - 135,967,847 (+)	NCBI			mm8
Celera	1	136,728,484 - 136,764,033 (+)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI

Chit1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	39,229,356 - 39,241,540 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	39,229,161 - 39,253,328 (-)	NCBI	ChiLan1.0	ChiLan1.0

CHIT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	183,112,412 - 183,126,052 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	1	178,816,396 - 178,875,895 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

Chit1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936567	1,373,727 - 1,385,694 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHIT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	113,927,716 - 113,941,433 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	113,927,715 - 113,941,445 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	125,386,204 - 125,431,735 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHIT1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	26,120,089 - 26,133,093 (+)	NCBI

Chit1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624807	7,612,263 - 7,625,782 (+)	NCBI

Position Markers

AW531798

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	50,994,408 - 50,994,612	NCBI	Rnor6.0
Rnor_5.0	13	56,046,736 - 56,046,940	UniSTS	Rnor5.0
RGSC_v3.4	13	47,109,132 - 47,109,336	UniSTS	RGSC3.4
Celera	13	45,941,481 - 45,941,685	UniSTS
RH 3.4 Map	13	183.9	UniSTS
Cytogenetic Map	13	q13	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	1	107975663	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	107975663	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	107975663	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	9016906	82995569	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	9016906	82995569	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	12193394	108478121	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	14096330	59096330	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	14096330	59096330	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	14441582	51577031	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	14624631	59624631	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	14624631	59624631	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	19810814	64810814	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	20052477	65052477	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	21482481	58537177	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	24502279	108770533	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	28008338	73008338	Rat
70170	Eae14	Experimental allergic encephalomyelitis QTL 14		0.0024	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	28584452	73584452	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	29076934	74076934	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	29076934	74076934	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	35301263	107975663	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	36147533	64868393	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	36147533	99968921	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	36147533	99968921	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	36147533	99968921	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	36147533	99968921	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	37346348	82346348	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39372927	84372927	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39501300	93652524	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	42310744	86833540	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	42310744	87310744	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	42508345	87508345	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	42508345	87508345	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	43575717	88575717	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	45676629	90676629	Rat
4145117	Mcs27	Mammary carcinoma susceptibility QTL 27		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	13	48776655	53264877	Rat
6893344	Cm79	Cardiac mass QTL 79	1.5	0.04	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	49058507	67207219	Rat
12879436	Bp395	Blood pressure QTL 395			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	49994708	51081193	Rat
12879472	Bp399	Blood pressure QTL 399			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	50609228	53264877	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	210
Count of miRNA genes:	128
Interacting mature miRNAs:	133
Transcripts:	ENSRNOT00000035658
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium					5						6	11
Low	3	35	45	29	14	29	8	11	59	35	35		8
Below cutoff		8	8	8		8			15

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001079689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001270846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001270847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001270848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC117152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ286232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ923316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ923317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ923318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ923319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ923320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000035658 ⟹ ENSRNOP00000036477

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	50,977,431 - 50,994,643 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080768 ⟹ ENSRNOP00000070204

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	50,974,872 - 50,994,643 (+)	Ensembl

RefSeq Acc Id:

NM_001079689 ⟹ NP_001073157

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,593,845 - 45,613,592 (+)	NCBI
Rnor_6.0	13	50,974,872 - 50,994,643 (+)	NCBI
Rnor_5.0	13	56,000,134 - 56,046,972 (+)	NCBI
RGSC_v3.4	13	47,095,240 - 47,109,367 (+)	RGD
Celera	13	45,922,360 - 45,941,716 (+)	NCBI

Sequence:

show sequence

GGACACCACTGAGGTGGCCATGGTAAGAAGCTGTATCAGGCAGGGTCTGATTAAAGTGTCTCAA
AGGACACCCTGGCTGCTCCGGAAGTGCCAGCAGAGGGCAGAGAGGAAGGAGGGAACTCAGAGAA
GAGGCTCTGTTGGTGTGCAGGGTACCAGCTGACACCATCGTGGAGGTGGAGGAGATAGGCCAGC
TAGTAACACCTGGCCATTGAGGGTGGAGAAAAGAGGGAGTTTCTATGTGTGATAGTTGGCATAT
AGTTGGCCCAGGGAGTGGCACTATTAAAAGATGTGACTCTGTTGGAGTGGGTGTGTCACTGTGC
ATGTGGGTTTTAAGACCCTCATCTTGGCTGCCTGGGAGTATTCTGTTAGTAGCCTTCAGATGAA
GATGTAGAACTCTCAGCTCCTCCTGCACCATGCCTGCCTGGATGCTGCCATGTTCCCACCCTGT
TGATAATGGACTGAACCTCTGAACCTGTATCCATTTCAACATTTCTGGCTGTGTGGCAGCAGGC
CAGCCTGAGGAGAGCAGAGCAGGACCTGTGGAGCCGCTCCTCACAGAGCTCTATCTGCTGGAGG
CAGGGTCATGGTGCAGTCCCTGGCCTTGGCAGGTGTGACGACTCTGCTGATGATCCAGTGGGGC
TCTGCTGCAAAACTGTTCTGCTACTTCACCAACTGGGCCCAGTACCGGTCCGGGGCAGCTCGAT
TCCTACCTAGGGATGTGGATCCCAACCTGTGTACCCATGTCATCTATGCCTTTGCTGGACTGAA
CAACCACCAGGTCAGCACTGTAGAGCCCAATGACGAGCTTTTCTACCAAGAGCTGAACAGCCTA
AAGAAGAGGAACCCCAAGCTCAAGACCCTGTTAGCCGTCGGGGGCTGGAGCTTTGGTACCCAGA
AGTTCACAGACATGGTGGCCACAGCCAGCACCCGGCAGACCTTTGTCAACTCAGCTCTCTCGTT
CCTGCGCACTCATGGTTTTGACGGCCTTGACCTTGACTGGGAATACCCAGGAAGCCGAGGGAGC
CCAGCAGTAGACAAAGAGAGATTCACAGCGCTGATACAGGATTTGGCCAAAGCCTTCCAGGAGG
AAGCCCGGGCCTCAGGGAAAAGTCGCCTCCTTCTGACTGCAGCTGTACCAACTGGTCGAGGCCA
TGTGGATGCTGGTTATGAGGTGGACAAGATTGTTCAGAGTTTGGATTTCATCAACCTTATGGCC
TACGACTTCCACAGCTCCTGGGACAAGACCACAGGGCACAACAGCCCCCTCTACAAAAGGCAAG
GAGAGACTGGGAAAGATGCTGAAAAAAATGTGGATGCTGCTGTGACGCTCTGGCTGCAGAAGGG
GACCCCTGCCAGCAAACTGATGCTTGGCATGCCCGCCTACGGACGCTCCTTCACCTTGGCCTCC
TCATCAGACAGTGGAGTTGGGGCTCCAGCCACAGGACCTGGGGCCCCAGGCCCCTATACTAAGG
AAAAGGGGATACTGGTTTACTTTGAGGTCTGCTCCTGGAAGGGAAAACAGAGAATCGAGGACCA
GAAGGTGCCCTATGTCTCCCAGGGCAACCAATGGGTGGGATTTGATGACAGGGAAAGCTTCAGA
GCCAAGGCTGCCTATGTGAAACAGAAGGGACTGGGAGGGGCCATGGTCTGGATTCTGGATGGGG
ATGACTTCAAAGGTTCCTTCTGCAACGAGGGCCAGTACCCTCTCATCCGGACACTACACCAGGA
GCTGAGCCTTTCATCCGGGCCTCCAAGAAGCCCAGAACAGGAAGTACCTGGGCCACACCAGCCT
TCTGAGCCCGAGCAGGGCCCCAGCCCAGGGCTAGATGACTTCTGCCAAGGCAAAGCTGATGGGC
TCTACCCCAACCCTACAGAAAAGTCCAGTTTCTACAGCTGTGGAGGGGGGCGACTGTTCCAGCA
CAGCTGCCCCCCAGGCCTGGTGTTTATCGACTCTTGCAAATGCTGTACCTGGGGTTGAGTCCCT
GGAGTCCCATCAGACTCCAGTCTGAGGCCAGGCTTGGGACGCCCCGCCCCCTGCCAGTAGCTTG
CTTCTGCTTTCCCTGGGGGGCTGCAGGAGGCCTCTCTGTTCTTTCCCTGACTCGGCCTCTGCTC
AGCTTTTTGGCTTCCTTTTTGTCTCTTCTAGGCTCCCGCTTTACCTGAAAAAATAAACTTATTT
TTCACCCCCG

hide sequence

RefSeq Acc Id:

NM_001270846 ⟹ NP_001257775

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,593,845 - 45,613,592 (+)	NCBI
Rnor_6.0	13	50,974,872 - 50,994,643 (+)	NCBI
Rnor_5.0	13	56,000,134 - 56,046,972 (+)	NCBI
Celera	13	45,922,360 - 45,941,716 (+)	NCBI

Sequence:

show sequence

GGACACCACTGAGGTGGCCATGGAAAGCAGAGTCACAGGGCACCATGCGCTCCTCAACCAACTT
CTGAAGGACCTTCAAGGGAGCTTATCTCAGAGGTGACAGATCCCTGATGACCTCAGAGGGTATC
CATTTCAACATTTCTGGCTGTGTGGCAGCAGGCCAGCCTGAGGAGAGCAGAGCAGGACCTGTGG
AGCCGCTCCTCACAGAGCTCTATCTGCTGGAGGCAGGGTCATGGTGCAGTCCCTGGCCTTGGCA
GGTGTGACGACTCTGCTGATGATCCAGTGGGGCTCTGCTGCAAAACTGTTCTGCTACTTCACCA
ACTGGGCCCAGTACCGGTCCGGGGCAGCTCGATTCCTACCTAGGGATGTGGATCCCAACCTGTG
TACCCATGTCATCTATGCCTTTGCTGGACTGAACAACCACCAGGTCAGCACTGTAGAGCCCAAT
GACGAGCTTTTCTACCAAGAGCTGAACAGCCTAAAGAAGAGGAACCCCAAGCTCAAGACCCTGT
TAGCCGTCGGGGGCTGGAGCTTTGGTACCCAGAAGTTCACAGACATGGTGGCCACAGCCAGCAC
CCGGCAGACCTTTGTCAACTCAGCTCTCTCGTTCCTGCGCACTCATGGTTTTGACGGCCTTGAC
CTTGACTGGGAATACCCAGGAAGCCGAGGGAGCCCAGCAGTAGACAAAGAGAGATTCACAGCGC
TGATACAGGATTTGGCCAAAGCCTTCCAGGAGGAAGCCCGGGCCTCAGGGAAAAGTCGCCTCCT
TCTGACTGCAGCTGTACCAACTGGTCGAGGCCATGTGGATGCTGGTTATGAGGTGGACAAGATT
GTTCAGAGTTTGGATTTCATCAACCTTATGGCCTACGACTTCCACAGCTCCTGGGACAAGACCA
CAGGGCACAACAGCCCCCTCTACAAAAGGCAAGGAGAGACTGGGAAAGATGCTGAAAAAAATGT
GGATGCTGCTGTGACGCTCTGGCTGCAGAAGGGGACCCCTGCCAGCAAACTGATGCTTGGCATG
CCCGCCTACGGACGCTCCTTCACCTTGGCCTCCTCATCAGACAGTGGAGTTGGGGCTCCAGCCA
CAGGACCTGGGGCCCCAGGCCCCTATACTAAGGAAAAGGGGATACTGGTTTACTTTGAGGTCTG
CTCCTGGAAGGGAAAACAGAGAATCGAGGACCAGAAGGTGCCCTATGTCTCCCAGGGCAACCAA
TGGGTGGGATTTGATGACAGGGAAAGCTTCAGAGCCAAGGCTGCCTATGTGAAACAGAAGGGAC
TGGGAGGGGCCATGGTCTGGATTCTGGATGGGGATGACTTCAAAGGTTCCTTCTGCAACGAGGG
CCAGTACCCTCTCATCCGGACACTACACCAGGAGCTGAGCCTTTCATCCGGGCCTCCAAGAAGC
CCAGAACAGGAAGTACCTGGGCCACACCAGCCTTCTGAGCCCGAGCAGGGCCCCAGCCCAGGGC
TAGATGACTTCTGCCAAGGCAAAGCTGATGGGCTCTACCCCAACCCTACAGAAAAGTCCAGTTT
CTACAGCTGTGGAGGGGGGCGACTGTTCCAGCACAGCTGCCCCCCAGGCCTGGTGTTTATCGAC
TCTTGCAAATGCTGTACCTGGGGTTGAGTCCCTGGAGTCCCATCAGACTCCAGTCTGAGGCCAG
GCTTGGGACGCCCCGCCCCCTGCCAGTAGCTTGCTTCTGCTTTCCCTGGGGGGCTGCAGGAGGC
CTCTCTGTTCTTTCCCTGACTCGGCCTCTGCTCAGCTTTTTGGCTTCCTTTTTGTCTCTTCTAG
GCTCCCGCTTTACCTGAAAAAATAAACTTATTTTTCACCCCCG

hide sequence

RefSeq Acc Id:

NM_001270847 ⟹ NP_001257776

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,593,845 - 45,613,592 (+)	NCBI
Rnor_6.0	13	50,974,872 - 50,994,643 (+)	NCBI
Rnor_5.0	13	56,000,134 - 56,046,972 (+)	NCBI
Celera	13	45,922,360 - 45,941,716 (+)	NCBI

Sequence:

show sequence

GGACACCACTGAGGTGGCCATGGTATCCATTTCAACATTTCTGGCTGTGTGGCAGCAGGCCAGC
CTGAGGAGAGCAGAGCAGGACCTGTGGAGCCGCTCCTCACAGAGCTCTATCTGCTGGAGGCAGG
GTCATGGTGCAGTCCCTGGCCTTGGCAGGTGTGACGACTCTGCTGATGATCCAGTGGGGCTCTG
CTGCAAAACTGTTCTGCTACTTCACCAACTGGGCCCAGTACCGGTCCGGGGCAGCTCGATTCCT
ACCTAGGGATGTGGATCCCAACCTGTGTACCCATGTCATCTATGCCTTTGCTGGACTGAACAAC
CACCAGGTCAGCACTGTAGAGCCCAATGACGAGCTTTTCTACCAAGAGCTGAACAGCCTAAAGA
AGAGGAACCCCAAGCTCAAGACCCTGTTAGCCGTCGGGGGCTGGAGCTTTGGTACCCAGAAGTT
CACAGACATGGTGGCCACAGCCAGCACCCGGCAGACCTTTGTCAACTCAGCTCTCTCGTTCCTG
CGCACTCATGGTTTTGACGGCCTTGACCTTGACTGGGAATACCCAGGAAGCCGAGGGAGCCCAG
CAGTAGACAAAGAGAGATTCACAGCGCTGATACAGGATTTGGCCAAAGCCTTCCAGGAGGAAGC
CCGGGCCTCAGGGAAAAGTCGCCTCCTTCTGACTGCAGCTGTACCAACTGGTCGAGGCCATGTG
GATGCTGGTTATGAGGTGGACAAGATTGTTCAGAGTTTGGATTTCATCAACCTTATGGCCTACG
ACTTCCACAGCTCCTGGGACAAGACCACAGGGCACAACAGCCCCCTCTACAAAAGGCAAGGAGA
GACTGGGAAAGATGCTGAAAAAAATGTGGATGCTGCTGTGACGCTCTGGCTGCAGAAGGGGACC
CCTGCCAGCAAACTGATGCTTGGCATGCCCGCCTACGGACGCTCCTTCACCTTGGCCTCCTCAT
CAGACAGTGGAGTTGGGGCTCCAGCCACAGGACCTGGGGCCCCAGGCCCCTATACTAAGGAAAA
GGGGATACTGGTTTACTTTGAGGTCTGCTCCTGGAAGGGAAAACAGAGAATCGAGGACCAGAAG
GTGCCCTATGTCTCCCAGGGCAACCAATGGGTGGGATTTGATGACAGGGAAAGCTTCAGAGCCA
AGGCTGCCTATGTGAAACAGAAGGGACTGGGAGGGGCCATGGTCTGGATTCTGGATGGGGATGA
CTTCAAAGGTTCCTTCTGCAACGAGGGCCAGTACCCTCTCATCCGGACACTACACCAGGAGCTG
AGCCTTTCATCCGGGCCTCCAAGAAGCCCAGAACAGGAAGTACCTGGGCCACACCAGCCTTCTG
AGCCCGAGCAGGGCCCCAGCCCAGGGCTAGATGACTTCTGCCAAGGCAAAGCTGATGGGCTCTA
CCCCAACCCTACAGAAAAGTCCAGTTTCTACAGCTGTGGAGGGGGGCGACTGTTCCAGCACAGC
TGCCCCCCAGGCCTGGTGTTTATCGACTCTTGCAAATGCTGTACCTGGGGTTGAGTCCCTGGAG
TCCCATCAGACTCCAGTCTGAGGCCAGGCTTGGGACGCCCCGCCCCCTGCCAGTAGCTTGCTTC
TGCTTTCCCTGGGGGGCTGCAGGAGGCCTCTCTGTTCTTTCCCTGACTCGGCCTCTGCTCAGCT
TTTTGGCTTCCTTTTTGTCTCTTCTAGGCTCCCGCTTTACCTGAAAAAATAAACTTATTTTTCA
CCCCCG

hide sequence

RefSeq Acc Id:

NM_001270848 ⟹ NP_001257777

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,565,841 - 45,613,592 (+)	NCBI
Rnor_6.0	13	50,947,020 - 50,994,643 (+)	NCBI
Rnor_5.0	13	56,000,134 - 56,046,972 (+)	NCBI
Celera	13	45,894,357 - 45,941,716 (+)	NCBI

Sequence:

show sequence

GCAGTTGGAACAACTTGTAGAGCTCTCAGCAACTTCTCCAACACCAAGTCGGCCTGGATGCTGC
CATGCTCCCCACCATGATGATAATGGACTGAGCCTCTGAAACAGTATCCATTTCAACATTTCTG
GCTGTGTGGCAGCAGGCCAGCCTGAGGAGAGCAGAGCAGGACCTGTGGAGCCGCTCCTCACAGA
GCTCTATCTGCTGGAGGCAGGGTCATGGTGCAGTCCCTGGCCTTGGCAGGTGTGACGACTCTGC
TGATGATCCAGTGGGGCTCTGCTGCAAAACTGTTCTGCTACTTCACCAACTGGGCCCAGTACCG
GTCCGGGGCAGCTCGATTCCTACCTAGGGATGTGGATCCCAACCTGTGTACCCATGTCATCTAT
GCCTTTGCTGGACTGAACAACCACCAGGTCAGCACTGTAGAGCCCAATGACGAGCTTTTCTACC
AAGAGCTGAACAGCCTAAAGAAGAGGAACCCCAAGCTCAAGACCCTGTTAGCCGTCGGGGGCTG
GAGCTTTGGTACCCAGAAGTTCACAGACATGGTGGCCACAGCCAGCACCCGGCAGACCTTTGTC
AACTCAGCTCTCTCGTTCCTGCGCACTCATGGTTTTGACGGCCTTGACCTTGACTGGGAATACC
CAGGAAGCCGAGGGAGCCCAGCAGTAGACAAAGAGAGATTCACAGCGCTGATACAGGATTTGGC
CAAAGCCTTCCAGGAGGAAGCCCGGGCCTCAGGGAAAAGTCGCCTCCTTCTGACTGCAGCTGTA
CCAACTGGTCGAGGCCATGTGGATGCTGGTTATGAGGTGGACAAGATTGTTCAGAGTTTGGATT
TCATCAACCTTATGGCCTACGACTTCCACAGCTCCTGGGACAAGACCACAGGGCACAACAGCCC
CCTCTACAAAAGGCAAGGAGAGACTGGGAAAGATGCTGAAAAAAATGTGGATGCTGCTGTGACG
CTCTGGCTGCAGAAGGGGACCCCTGCCAGCAAACTGATGCTTGGCATGCCCGCCTACGGACGCT
CCTTCACCTTGGCCTCCTCATCAGACAGTGGAGTTGGGGCTCCAGCCACAGGACCTGGGGCCCC
AGGCCCCTATACTAAGGAAAAGGGGATACTGGTTTACTTTGAGGTCTGCTCCTGGAAGGGAAAA
CAGAGAATCGAGGACCAGAAGGTGCCCTATGTCTCCCAGGGCAACCAATGGGTGGGATTTGATG
ACAGGGAAAGCTTCAGAGCCAAGGCTGCCTATGTGAAACAGAAGGGACTGGGAGGGGCCATGGT
CTGGATTCTGGATGGGGATGACTTCAAAGGTTCCTTCTGCAACGAGGGCCAGTACCCTCTCATC
CGGACACTACACCAGGAGCTGAGCCTTTCATCCGGGCCTCCAAGAAGCCCAGAACAGGAAGTAC
CTGGGCCACACCAGCCTTCTGAGCCCGAGCAGGGCCCCAGCCCAGGGCTAGATGACTTCTGCCA
AGGCAAAGCTGATGGGCTCTACCCCAACCCTACAGAAAAGTCCAGTTTCTACAGCTGTGGAGGG
GGGCGACTGTTCCAGCACAGCTGCCCCCCAGGCCTGGTGTTTATCGACTCTTGCAAATGCTGTA
CCTGGGGTTGAGTCCCTGGAGTCCCATCAGACTCCAGTCTGAGGCCAGGCTTGGGACGCCCCGC
CCCCTGCCAGTAGCTTGCTTCTGCTTTCCCTGGGGGGCTGCAGGAGGCCTCTCTGTTCTTTCCC
TGACTCGGCCTCTGCTCAGCTTTTTGGCTTCCTTTTTGTCTCTTCTAGGCTCCCGCTTTACCTG
AAAAAATAAACTTATTTTTCACCCCCG

hide sequence

RefSeq Acc Id:

XM_008769542 ⟹ XP_008767764

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	50,977,454 - 50,994,644 (+)	NCBI

Sequence:

show sequence

GAAAGCAGAGTCACAGGGCACCATGCGCTCCTCAACCAACTTCTGAAGGACCTTCAAGGGAGCT
TATCTCAGAGGTGACAGATCCCTGATGACCTCAGAGGGTATCCATTTCAACATTTCTGGCTGTG
TGGCAGCAGGCCAGCCTGAGGAGAGCAGAGCAGGACCTGTGGAGCCGCTCCTCACAGAGCTCTA
TCTGCTGGAGGCAGGGTCATGGTGCAGTCCCTGGCCTTGGCAGGCTCTGCTGCAAAACTGTTCT
GCTACTTCACCAACTGGGCCCAGTACCGGTCCGGGGCAGCTCGATTCCTACCTAGGGATGTGGA
TCCCAACCTGTGTACCCATGTCATCTATGCCTTTGCTGGACTGAACAACCACCAGGTCAGCACT
GTAGAGCCCAATGACGAGCTTTTCTACCAAGAGCTGAACAGCCTAAAGAAGAGGAACCCCAAGC
TCAAGACCCTGTTAGCCGTCGGGGGCTGGAGCTTTGGTACCCAGAAGTTCACAGACATGGTGGC
CACAGCCAGCACCCGGCAGACCTTTGTCAACTCAGCTCTCTCGTTCCTGCGCACTCATGGTTTT
GACGGCCTTGACCTTGACTGGGAATACCCAGGAAGCCGAGGGAGCCCAGCAGTAGACAAAGAGA
GATTCACAGCGCTGATACAGGATTTGGCCAAAGCCTTCCAGGAGGAAGCCCGGGCCTCAGGGAA
AAGTCGCCTCCTTCTGACTGCAGCTGTACCAACTGGTCGAGGCCATGTGGATGCTGGTTATGAG
GTGGACAAGATTGTTCAGAGTTTGGATTTCATCAACCTTATGGCCTACGACTTCCACAGCTCCT
GGGACAAGACCACAGGGCACAACAGCCCCCTCTACAAAAGGCAAGGAGAGACTGGGAAAGATGC
TGAAAAAAATGTGGATGCTGCTGTGACGCTCTGGCTGCAGAAGGGGACCCCTGCCAGCAAACTG
ATGCTTGGCATGCCCGCCTACGGACGCTCCTTCACCTTGGCCTCCTCATCAGACAGTGGAGTTG
GGGCTCCAGCCACAGGACCTGGGGCCCCAGGCCCCTATACTAAGGAAAAGGGGATACTGGTTTA
CTTTGAGGTCTGCTCCTGGAAGGGAAAACAGAGAATCGAGGACCAGAAGGTGCCCTATGTCTCC
CAGGGCAACCAATGGGTGGGATTTGATGACAGGGAAAGCTTCAGAGCCAAGGCTGCCTATGTGA
AACAGAAGGGACTGGGAGGGGCCATGGTCTGGATTCTGGATGGGGATGACTTCAAAGGTTCCTT
CTGCAACGAGGGCCAGTACCCTCTCATCCGGACACTACACCAGGAGCTGAGCCTTTCATCCGGG
CCTCCAAGAAGCCCAGAACAGGAAGTACCTGGGCCACACCAGCCTTCTGAGCCCGAGCAGGGCC
CCAGCCCAGGGCTAGATGACTTCTGCCAAGGCAAAGCTGATGGGCTCTACCCCAACCCTACAGA
AAAGTCCAGTTTCTACAGCTGTGGAGGGGGGCGACTGTTCCAGCACAGCTGCCCCCCAGGCCTG
GTGTTTATCGACTCTTGCAAATGCTGTACCTGGGGTTGAGTCCCTGGAGTCCCATCAGACTCCA
GTCTGAGGCCAGGCTTGGGACGCCCCGCCCCCTGCCAGTAGCTTGCTTCTGCTTTCCCTGGGGG
GCTGCAGGAGGCCTCTCTGTTCTTTCCCTGACTCGGCCTCTGCTCAGCTTTTTGGCTTCCTTTT
TGTCTCTTCTAGGCTCCCGCTTTACCTGAAAAAATAAACTTATTTTTCACCCCCGA

hide sequence

RefSeq Acc Id:

XM_017598698 ⟹ XP_017454187

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	50,977,230 - 50,994,644 (+)	NCBI

Sequence:

show sequence

AGCTCTGCAGTCAGGCGCCATTGTCAGGTCTTTTTGGTGACCCAAAGCTACCAGTCATTCCATC
ATAGAGGTGAGAGATAAGAAAAGTCCCTAGAGAAGTTCCCCACCCTGACCAAACTCCCTCCATT
AGCCTCCCCACTCCCATCCACAACCCCAGGCATTTCTGCCAATGCCAGGATCCCACGCGGAGTC
AGAAACACTGAAACAAATCTGTGTGTTCACAGGAAAGCAGAGTCACAGGGCACCATGCGCTCCT
CAACCAACTTCTGAAGGACCTTCAAGGGAGCTTATCTCAGAGGTGACAGATCCCTGATGACCTC
AGAGGGTATCCATTTCAACATTTCTGGCTGTGTGGCAGCAGGCCAGCCTGAGGAGAGCAGAGCA
GGACCTGTGGAGCCGCTCCTCACAGAGCTCTATCTGCTGGAGGCAGGGTCATGGTGCAGTCCCT
GGCCTTGGCAGGTGTGACGACTCTGCTGATGATCCAGTGGGGCTCTGCTGCAAAACTGTTCTGC
TACTTCACCAACTGGGCCCAGTACCGGTCCGGGGCAGCTCGATTCCTACCTAGGGATGTGGATC
CCAACCTGTGTACCCATGTCATCTATGCCTTTGCTGGACTGAACAACCACCAGGTCAGCACTGT
AGAGCCCAATGACGAGCTTTTCTACCAAGAGCTGAACAGCCTAAAGAAGAGGAACCCCAAGCTC
AAGACCCTGTTAGCCGTCGGGGGCTGGAGCTTTGGTACCCAGAAGTTCACAGACATGGTGGCCA
CAGCCAGCACCCGGCAGACCTTTGTCAACTCAGCTCTCTCGTTCCTGCGCACTCATGGTTTTGA
CGGCCTTGACCTTGACTGGGAATACCCAGGAAGCCGAGGGAGCCCAGCAGTAGACAAAGAGAGA
TTCACAGCGCTGATACAGGATTTGGCCAAAGCCTTCCAGGAGGAAGCCCGGGCCTCAGGGAAAA
GTCGCCTCCTTCTGACTGCAGCTGTACCAACTGGTCGAGGCCATGTGGATGCTGGTTATGAGGT
GGACAAGATTGTTCAGAGTTTGGATTTCATCAACCTTATGGCCTACGACTTCCACAGCTCCTGG
GACAAGACCACAGGGCACAACAGCCCCCTCTACAAAAGGCAAGGAGAGACTGGGAAAGATGCTG
AAAAAAATGTGGATGCTGCTGTGACGCTCTGGCTGCAGAAGGGGACCCCTGCCAGCAAACTGAT
GCTTGGCATGCCCGCCTACGGACGCTCCTTCACCTTGGCCTCCTCATCAGACAGTGGAGTTGGG
GCTCCAGCCACAGGACCTGGGGCCCCAGGCCCCTATACTAAGGAAAAGGGGATACTGGTTTACT
TTGAGGTCTGCTCCTGGAAGGGAAAACAGAGAATCGAGGACCAGAAGGTGCCCTATGTCTCCCA
GGGCAACCAATGGGTGGGATTTGATGACAGGGAAAGCTTCAGAGCCAAGGCTGCCTATGTGAAA
CAGAAGGGACTGGGAGGGGCCATGGTCTGGATTCTGGATGGGGATGACTTCAAAGGTTCCTTCT
GCAACGAGGGCCAGTACCCTCTCATCCGGACACTACACCAGGAGCTGAGCCTTTCATCCGGGCC
TCCAAGAAGCCCAGAACAGGAAGTACCTGGGCCACACCAGCCTTCTGAGCCCGAGCAGGGCCCC
AGCCCAGGGCTAGATGACTTCTGCCAAGGCAAAGCTGATGGGCTCTACCCCAACCCTACAGAAA
AGTCCAGTTTCTACAGCTGTGGAGGGGGGCGACTGTTCCAGCACAGCTGCCCCCCAGGCCTGGT
GTTTATCGACTCTTGCAAATGCTGTACCTGGGGTTGAGTCCCTGGAGTCCCATCAGACTCCAGT
CTGAGGCCAGGCTTGGGACGCCCCGCCCCCTGCCAGTAGCTTGCTTCTGCTTTCCCTGGGGGGC
TGCAGGAGGCCTCTCTGTTCTTTCCCTGACTCGGCCTCTGCTCAGCTTTTTGGCTTCCTTTTTG
TCTCTTCTAGGCTCCCGCTTTACCTGAAAAAATAAACTTATTTTTCACCCCCGA

hide sequence

RefSeq Acc Id:

XM_039090435 ⟹ XP_038946363

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,600,098 - 45,613,593 (+)	NCBI

RefSeq Acc Id:

XM_039090436 ⟹ XP_038946364

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,600,095 - 45,613,593 (+)	NCBI

RefSeq Acc Id:

XM_039090437 ⟹ XP_038946365

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,600,086 - 45,613,415 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001073157	(Get FASTA)	NCBI Sequence Viewer
	NP_001257775	(Get FASTA)	NCBI Sequence Viewer
	NP_001257776	(Get FASTA)	NCBI Sequence Viewer
	NP_001257777	(Get FASTA)	NCBI Sequence Viewer
	XP_038946363	(Get FASTA)	NCBI Sequence Viewer
	XP_038946364	(Get FASTA)	NCBI Sequence Viewer
	XP_038946365	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABB89471	(Get FASTA)	NCBI Sequence Viewer
	ABL06995	(Get FASTA)	NCBI Sequence Viewer
	ABL06996	(Get FASTA)	NCBI Sequence Viewer
	ABL06997	(Get FASTA)	NCBI Sequence Viewer
	ABL06998	(Get FASTA)	NCBI Sequence Viewer
	ABL06999	(Get FASTA)	NCBI Sequence Viewer
	EDM09742	(Get FASTA)	NCBI Sequence Viewer
	EDM09743	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001073157 ⟸ NM_001079689
- Peptide Label:	precursor
- UniProtKB:	A0S5V8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNH QVSTVEPNDELFYQELNSLKKRNPKLKTLLAVGGWSFGTQKFTDMVATASTRQTFVNSALSFLR THGFDGLDLDWEYPGSRGSPAVDKERFTALIQDLAKAFQEEARASGKSRLLLTAAVPTGRGHVD AGYEVDKIVQSLDFINLMAYDFHSSWDKTTGHNSPLYKRQGETGKDAEKNVDAAVTLWLQKGTP ASKLMLGMPAYGRSFTLASSSDSGVGAPATGPGAPGPYTKEKGILVYFEVCSWKGKQRIEDQKV PYVSQGNQWVGFDDRESFRAKAAYVKQKGLGGAMVWILDGDDFKGSFCNEGQYPLIRTLHQELS LSSGPPRSPEQEVPGPHQPSEPEQGPSPGLDDFCQGKADGLYPNPTEKSSFYSCGGGRLFQHSC PPGLVFIDSCKCCTWG hide sequence

RefSeq Acc Id:	NP_001257777 ⟸ NM_001270848
- Peptide Label:	precursor
- UniProtKB:	A0S5V8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNH QVSTVEPNDELFYQELNSLKKRNPKLKTLLAVGGWSFGTQKFTDMVATASTRQTFVNSALSFLR THGFDGLDLDWEYPGSRGSPAVDKERFTALIQDLAKAFQEEARASGKSRLLLTAAVPTGRGHVD AGYEVDKIVQSLDFINLMAYDFHSSWDKTTGHNSPLYKRQGETGKDAEKNVDAAVTLWLQKGTP ASKLMLGMPAYGRSFTLASSSDSGVGAPATGPGAPGPYTKEKGILVYFEVCSWKGKQRIEDQKV PYVSQGNQWVGFDDRESFRAKAAYVKQKGLGGAMVWILDGDDFKGSFCNEGQYPLIRTLHQELS LSSGPPRSPEQEVPGPHQPSEPEQGPSPGLDDFCQGKADGLYPNPTEKSSFYSCGGGRLFQHSC PPGLVFIDSCKCCTWG hide sequence

RefSeq Acc Id:	NP_001257775 ⟸ NM_001270846
- Peptide Label:	precursor
- UniProtKB:	A0S5V8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNH QVSTVEPNDELFYQELNSLKKRNPKLKTLLAVGGWSFGTQKFTDMVATASTRQTFVNSALSFLR THGFDGLDLDWEYPGSRGSPAVDKERFTALIQDLAKAFQEEARASGKSRLLLTAAVPTGRGHVD AGYEVDKIVQSLDFINLMAYDFHSSWDKTTGHNSPLYKRQGETGKDAEKNVDAAVTLWLQKGTP ASKLMLGMPAYGRSFTLASSSDSGVGAPATGPGAPGPYTKEKGILVYFEVCSWKGKQRIEDQKV PYVSQGNQWVGFDDRESFRAKAAYVKQKGLGGAMVWILDGDDFKGSFCNEGQYPLIRTLHQELS LSSGPPRSPEQEVPGPHQPSEPEQGPSPGLDDFCQGKADGLYPNPTEKSSFYSCGGGRLFQHSC PPGLVFIDSCKCCTWG hide sequence

RefSeq Acc Id:	NP_001257776 ⟸ NM_001270847
- Peptide Label:	precursor
- UniProtKB:	A0S5V8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNH QVSTVEPNDELFYQELNSLKKRNPKLKTLLAVGGWSFGTQKFTDMVATASTRQTFVNSALSFLR THGFDGLDLDWEYPGSRGSPAVDKERFTALIQDLAKAFQEEARASGKSRLLLTAAVPTGRGHVD AGYEVDKIVQSLDFINLMAYDFHSSWDKTTGHNSPLYKRQGETGKDAEKNVDAAVTLWLQKGTP ASKLMLGMPAYGRSFTLASSSDSGVGAPATGPGAPGPYTKEKGILVYFEVCSWKGKQRIEDQKV PYVSQGNQWVGFDDRESFRAKAAYVKQKGLGGAMVWILDGDDFKGSFCNEGQYPLIRTLHQELS LSSGPPRSPEQEVPGPHQPSEPEQGPSPGLDDFCQGKADGLYPNPTEKSSFYSCGGGRLFQHSC PPGLVFIDSCKCCTWG hide sequence

RefSeq Acc Id:

XP_008767764 ⟸ XM_008769542

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVQSLALAGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHQVSTVEPNDE
LFYQELNSLKKRNPKLKTLLAVGGWSFGTQKFTDMVATASTRQTFVNSALSFLRTHGFDGLDLD
WEYPGSRGSPAVDKERFTALIQDLAKAFQEEARASGKSRLLLTAAVPTGRGHVDAGYEVDKIVQ
SLDFINLMAYDFHSSWDKTTGHNSPLYKRQGETGKDAEKNVDAAVTLWLQKGTPASKLMLGMPA
YGRSFTLASSSDSGVGAPATGPGAPGPYTKEKGILVYFEVCSWKGKQRIEDQKVPYVSQGNQWV
GFDDRESFRAKAAYVKQKGLGGAMVWILDGDDFKGSFCNEGQYPLIRTLHQELSLSSGPPRSPE
QEVPGPHQPSEPEQGPSPGLDDFCQGKADGLYPNPTEKSSFYSCGGGRLFQHSCPPGLVFIDSC
KCCTWG

hide sequence

RefSeq Acc Id:

XP_017454187 ⟸ XM_017598698

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVQSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNH
QVSTVEPNDELFYQELNSLKKRNPKLKTLLAVGGWSFGTQKFTDMVATASTRQTFVNSALSFLR
THGFDGLDLDWEYPGSRGSPAVDKERFTALIQDLAKAFQEEARASGKSRLLLTAAVPTGRGHVD
AGYEVDKIVQSLDFINLMAYDFHSSWDKTTGHNSPLYKRQGETGKDAEKNVDAAVTLWLQKGTP
ASKLMLGMPAYGRSFTLASSSDSGVGAPATGPGAPGPYTKEKGILVYFEVCSWKGKQRIEDQKV
PYVSQGNQWVGFDDRESFRAKAAYVKQKGLGGAMVWILDGDDFKGSFCNEGQYPLIRTLHQELS
LSSGPPRSPEQEVPGPHQPSEPEQGPSPGLDDFCQGKADGLYPNPTEKSSFYSCGGGRLFQHSC
PPGLVFIDSCKCCTWG

hide sequence

RefSeq Acc Id:

ENSRNOP00000070204 ⟸ ENSRNOT00000080768

RefSeq Acc Id:

ENSRNOP00000036477 ⟸ ENSRNOT00000035658

RefSeq Acc Id:	XP_038946365 ⟸ XM_039090437
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038946364 ⟸ XM_039090436
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038946363 ⟸ XM_039090435
- Peptide Label:	isoform X1

Protein Domains

Chitin-binding type-2

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305646	AgrOrtholog
Ensembl Genes	ENSRNOG00000028072	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000036477	UniProtKB/TrEMBL
	ENSRNOP00000070204	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035658	UniProtKB/TrEMBL
	ENSRNOT00000080768	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	3.10.50.10	UniProtKB/TrEMBL
InterPro	Chitin-bd_dom_sf	UniProtKB/TrEMBL
	Chitin-bd_peritrophin-A	UniProtKB/TrEMBL
	Chitinase_II	UniProtKB/TrEMBL
	Chitinase_insertion	UniProtKB/TrEMBL
	Glyco_hydro18cat	UniProtKB/TrEMBL
	Glyco_hydro_18_chit_AS	UniProtKB/TrEMBL
	Glyco_hydro_catalytic_core	UniProtKB/TrEMBL
KEGG Report	rno:289032	UniProtKB/TrEMBL
NCBI Gene	289032	ENTREZGENE
Pfam	CBM_14	UniProtKB/TrEMBL
	Glyco_hydro_18	UniProtKB/TrEMBL
PhenoGen	Chit1	PhenoGen
PROSITE	CHIT_BIND_II	UniProtKB/TrEMBL
	CHITINASE_18	UniProtKB/TrEMBL
SMART	Glyco_18	UniProtKB/TrEMBL
Superfamily-SCOP	Chitin_bind_PerA	UniProtKB/TrEMBL
	Glyco_hydro_cat	UniProtKB/TrEMBL
	SSF54556	UniProtKB/TrEMBL
UniProt	A0S5V8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-09	Chit1	chitinase 1	Chit1	chitinase 1 (chitotriosidase)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Chit1	chitinase 1 (chitotriosidase)	Chit1_predicted	chitinase 1 (chitotriosidase) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Chit1_predicted	chitinase 1 (chitotriosidase) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)