Snx14 (sorting nexin 14) - Rat Genome Database

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Gene: Snx14 (sorting nexin 14) Rattus norvegicus
Analyze
Symbol: Snx14
Name: sorting nexin 14
RGD ID: 1310921
Description: Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity. Predicted to be involved in autophagosome maturation and postsynaptic modulation of chemical synaptic transmission. Predicted to be located in cytosol; lysosome; and postsynapse. Predicted to be active in late endosome and synapse. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 20. Orthologous to human SNX14 (sorting nexin 14); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC315871; sorting nexin-14
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2889,283,673 - 89,390,597 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl889,298,114 - 89,390,580 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx894,990,651 - 95,060,048 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0893,189,862 - 93,259,261 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0891,049,278 - 91,118,582 (-)NCBIRnor_WKY
Rnor_6.0896,018,943 - 96,088,405 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl896,023,445 - 96,088,405 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0895,518,745 - 95,583,948 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4893,645,995 - 93,711,298 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1893,665,874 - 93,730,750 (-)NCBI
Celera888,891,510 - 88,960,133 (-)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:25848753  


Genomics

Comparative Map Data
Snx14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2889,283,673 - 89,390,597 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl889,298,114 - 89,390,580 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx894,990,651 - 95,060,048 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0893,189,862 - 93,259,261 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0891,049,278 - 91,118,582 (-)NCBIRnor_WKY
Rnor_6.0896,018,943 - 96,088,405 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl896,023,445 - 96,088,405 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0895,518,745 - 95,583,948 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4893,645,995 - 93,711,298 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1893,665,874 - 93,730,750 (-)NCBI
Celera888,891,510 - 88,960,133 (-)NCBICelera
Cytogenetic Map8q31NCBI
SNX14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38685,505,496 - 85,593,858 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl685,504,776 - 85,594,156 (-)EnsemblGRCh38hg38GRCh38
GRCh37686,215,214 - 86,303,576 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36686,271,933 - 86,360,348 (-)NCBINCBI36Build 36hg18NCBI36
Build 34686,271,935 - 86,360,348NCBI
Celera686,642,396 - 86,730,827 (-)NCBICelera
Cytogenetic Map6q14.3NCBI
HuRef683,439,499 - 83,527,927 (-)NCBIHuRef
CHM1_1686,313,156 - 86,401,522 (-)NCBICHM1_1
T2T-CHM13v2.0686,722,300 - 86,810,666 (-)NCBIT2T-CHM13v2.0
Snx14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39988,258,805 - 88,320,982 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl988,258,800 - 88,321,011 (-)EnsemblGRCm39 Ensembl
GRCm38988,376,755 - 88,438,929 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl988,376,750 - 88,438,958 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl988,376,747 - 88,438,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv37988,271,585 - 88,333,789 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36988,174,668 - 88,236,822 (-)NCBIMGSCv36mm8
Celera985,403,829 - 85,465,439 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
Snx14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541112,969,114 - 13,048,836 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541112,967,980 - 13,048,839 (-)NCBIChiLan1.0ChiLan1.0
SNX14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1686,671,608 - 86,759,187 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl686,671,608 - 86,759,118 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0683,389,608 - 83,477,859 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SNX14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11245,526,042 - 45,598,868 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1245,518,721 - 45,599,012 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1245,340,809 - 45,413,610 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01246,295,243 - 46,368,369 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1246,295,255 - 46,368,497 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11245,628,679 - 45,701,471 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01245,557,567 - 45,630,672 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01245,744,588 - 45,817,744 (-)NCBIUU_Cfam_GSD_1.0
Snx14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494680,684,221 - 80,785,553 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365105,685,017 - 5,786,703 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365105,685,342 - 5,786,672 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl154,460,640 - 54,547,216 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1154,460,645 - 54,547,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2160,891,438 - 60,977,555 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11310,172,960 - 10,265,852 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1310,173,023 - 10,265,766 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040186,342,607 - 186,451,385 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247998,670,883 - 8,753,631 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247998,695,488 - 8,754,094 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snx14
488 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:11
Count of miRNA genes:9
Interacting mature miRNAs:11
Transcripts:ENSRNOT00000056818
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat

Markers in Region
D8Sunn1114  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2889,346,328 - 89,346,539 (+)MAPPERmRatBN7.2
Rnor_6.0896,044,263 - 96,044,473NCBIRnor6.0
Rnor_5.0895,539,940 - 95,540,150UniSTSRnor5.0
RGSC_v3.4893,667,181 - 93,667,391UniSTSRGSC3.4
Celera888,915,478 - 88,915,688UniSTS
Cytogenetic Map8q31UniSTS
RH134322  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map81013.5UniSTS
Cytogenetic Map8q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 35 19 19 19 3 3 74 35 41 11 3
Low 6 22 22 22 5 8 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000056818   ⟹   ENSRNOP00000053662
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl889,321,136 - 89,390,566 (-)Ensembl
Rnor_6.0 Ensembl896,023,502 - 96,088,405 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086161   ⟹   ENSRNOP00000069246
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl889,321,136 - 89,390,566 (-)Ensembl
Rnor_6.0 Ensembl896,023,445 - 96,088,364 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097159   ⟹   ENSRNOP00000092680
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl889,321,152 - 89,390,580 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097638   ⟹   ENSRNOP00000096281
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl889,321,152 - 89,390,580 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098240   ⟹   ENSRNOP00000090998
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl889,322,808 - 89,390,580 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104136   ⟹   ENSRNOP00000082879
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl889,371,941 - 89,390,580 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116546   ⟹   ENSRNOP00000095278
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl889,298,114 - 89,390,580 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117612   ⟹   ENSRNOP00000077467
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl889,313,344 - 89,390,580 (-)Ensembl
RefSeq Acc Id: NM_001108174   ⟹   NP_001101644
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2889,321,126 - 89,390,580 (-)NCBI
Rnor_6.0896,018,943 - 96,088,405 (-)NCBI
Rnor_5.0895,518,745 - 95,583,948 (-)NCBI
RGSC_v3.4893,645,995 - 93,711,298 (-)RGD
Celera888,891,510 - 88,960,133 (-)RGD
Sequence:
RefSeq Acc Id: XM_039081534   ⟹   XP_038937462
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2889,308,032 - 89,390,597 (-)NCBI
RefSeq Acc Id: XM_039081535   ⟹   XP_038937463
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2889,321,130 - 89,390,596 (-)NCBI
RefSeq Acc Id: XM_039081536   ⟹   XP_038937464
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2889,321,130 - 89,390,596 (-)NCBI
RefSeq Acc Id: XM_039081537   ⟹   XP_038937465
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2889,328,787 - 89,390,597 (-)NCBI
RefSeq Acc Id: XR_005487837
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2889,283,673 - 89,390,597 (-)NCBI
RefSeq Acc Id: XR_005487838
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2889,283,673 - 89,390,597 (-)NCBI
RefSeq Acc Id: XR_005487839
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2889,308,032 - 89,390,597 (-)NCBI
RefSeq Acc Id: XR_005487840
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2889,283,673 - 89,390,597 (-)NCBI
RefSeq Acc Id: XR_005487841
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2889,283,673 - 89,354,623 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001101644   ⟸   NM_001108174
- Sequence:
RefSeq Acc Id: ENSRNOP00000053662   ⟸   ENSRNOT00000056818
RefSeq Acc Id: ENSRNOP00000069246   ⟸   ENSRNOT00000086161
RefSeq Acc Id: XP_038937462   ⟸   XM_039081534
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038937464   ⟸   XM_039081536
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038937463   ⟸   XM_039081535
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038937465   ⟸   XM_039081537
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000095278   ⟸   ENSRNOT00000116546
RefSeq Acc Id: ENSRNOP00000092680   ⟸   ENSRNOT00000097159
RefSeq Acc Id: ENSRNOP00000082879   ⟸   ENSRNOT00000104136
RefSeq Acc Id: ENSRNOP00000090998   ⟸   ENSRNOT00000098240
RefSeq Acc Id: ENSRNOP00000096281   ⟸   ENSRNOT00000097638
RefSeq Acc Id: ENSRNOP00000077467   ⟸   ENSRNOT00000117612
Protein Domains
PX   PXA   RGS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZLX0-F1-model_v2 AlphaFold D3ZLX0 1-680 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696172
Promoter ID:EPDNEW_R6694
Type:initiation region
Name:Snx14_1
Description:sorting nexin 14
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0896,088,393 - 96,088,453EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310921 AgrOrtholog
BioCyc Gene G2FUF-29611 BioCyc
Ensembl Genes ENSRNOG00000011348 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000053662 ENTREZGENE
  ENSRNOP00000053662.5 UniProtKB/TrEMBL
  ENSRNOP00000069246 ENTREZGENE
  ENSRNOP00000069246.2 UniProtKB/TrEMBL
  ENSRNOP00000077467.1 UniProtKB/TrEMBL
  ENSRNOP00000082879.1 UniProtKB/TrEMBL
  ENSRNOP00000090998.1 UniProtKB/TrEMBL
  ENSRNOP00000092680.1 UniProtKB/TrEMBL
  ENSRNOP00000095278 ENTREZGENE
  ENSRNOP00000095278.1 UniProtKB/TrEMBL
  ENSRNOP00000096281.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000056818 ENTREZGENE
  ENSRNOT00000056818.4 UniProtKB/TrEMBL
  ENSRNOT00000086161 ENTREZGENE
  ENSRNOT00000086161.2 UniProtKB/TrEMBL
  ENSRNOT00000097159.1 UniProtKB/TrEMBL
  ENSRNOT00000097638.1 UniProtKB/TrEMBL
  ENSRNOT00000098240.1 UniProtKB/TrEMBL
  ENSRNOT00000104136.1 UniProtKB/TrEMBL
  ENSRNOT00000116546 ENTREZGENE
  ENSRNOT00000116546.1 UniProtKB/TrEMBL
  ENSRNOT00000117612.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.167.10 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7455732 IMAGE-MGC_LOAD
InterPro Phox UniProtKB/TrEMBL
  Phox_assoc UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  Regulat_G_prot_signal_superfam UniProtKB/TrEMBL
  RGS_sf UniProtKB/TrEMBL
  RGS_subdomain_2 UniProtKB/TrEMBL
  SNX14_PX UniProtKB/TrEMBL
  SNX14_RGS UniProtKB/TrEMBL
  Sorting_nexin_C UniProtKB/TrEMBL
MGC_CLONE MGC:188644 IMAGE-MGC_LOAD
NCBI Gene 315871 ENTREZGENE
Pfam Nexin_C UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
  PXA UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
PhenoGen Snx14 PhenoGen
PROSITE PS50195 UniProtKB/TrEMBL
  PXA UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
SMART PXA UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP 64268 UniProtKB/TrEMBL
  Regulat_G_prot_signal_superfam UniProtKB/TrEMBL
UniProt A0A0G2JUV6_RAT UniProtKB/TrEMBL
  A0A8I5YBU7_RAT UniProtKB/TrEMBL
  A0A8I5ZYS8_RAT UniProtKB/TrEMBL
  A0A8I6AHH1_RAT UniProtKB/TrEMBL
  A0A8I6AQL5_RAT UniProtKB/TrEMBL
  A0A8I6AT69_RAT UniProtKB/TrEMBL
  A0A8I6GJA7_RAT UniProtKB/TrEMBL
  B1H290_RAT UniProtKB/TrEMBL
  D3ZLX0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Snx14  sorting nexin 14   Snx14_predicted  sorting nexin 14 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Snx14_predicted  sorting nexin 14 (predicted)      Symbol and Name status set to approved 70820 APPROVED